Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30833 * 125.96216 * 2 1 4 4 C 1.33247 * 109.83008 * 180.20148 * 3 2 1 5 5 C 1.50694 * 125.52442 * 179.86078 * 4 3 2 6 6 H 1.09005 * 109.47310 * 344.70513 * 5 4 3 7 7 C 1.52998 * 109.47646 * 104.71187 * 5 4 3 8 8 N 1.46911 * 109.46696 * 224.71304 * 5 4 3 9 9 C 1.47958 * 111.00043 * 66.47908 * 8 5 4 10 10 C 1.53928 * 86.17948 * 137.58309 * 9 8 5 11 11 C 1.47956 * 110.99877 * 165.83861 * 8 5 4 12 12 H 1.09005 * 113.85994 * 336.74443 * 11 8 5 13 13 C 1.53002 * 113.76027 * 108.09874 * 11 8 5 14 14 N 1.46497 * 109.47075 * 160.73457 * 13 11 8 15 15 C 1.34777 * 119.99839 * 185.04937 * 14 13 11 16 16 O 1.21279 * 120.00485 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99931 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47102 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99832 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00093 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99648 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00038 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99701 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47011 * 89.99925 * 23 21 19 25 25 H 1.48494 * 109.47044 * 209.99571 * 23 21 19 26 26 H 1.48500 * 109.47224 * 330.00057 * 23 21 19 27 27 N 1.30709 * 108.94448 * 359.58564 * 4 3 2 28 28 N 1.34427 * 125.96171 * 179.76105 * 2 1 3 29 29 H 0.97003 * 126.82550 * 359.91901 * 28 2 1 30 30 H 1.09002 * 109.46542 * 270.26694 * 1 2 3 31 31 H 1.08994 * 109.47036 * 30.26483 * 1 2 3 32 32 H 1.09001 * 109.47174 * 150.27188 * 1 2 3 33 33 H 1.09002 * 109.46994 * 58.14048 * 7 5 4 34 34 H 1.09000 * 109.47116 * 178.14049 * 7 5 4 35 35 H 1.08997 * 109.47005 * 298.14737 * 7 5 4 36 36 H 1.08996 * 113.76075 * 23.25994 * 9 8 5 37 37 H 1.09008 * 113.75301 * 251.90171 * 9 8 5 38 38 H 1.09004 * 113.73604 * 90.63589 * 10 9 8 39 39 H 1.08999 * 113.73466 * 221.80982 * 10 9 8 40 40 H 1.08998 * 109.46948 * 280.73283 * 13 11 8 41 41 H 1.08999 * 109.47069 * 40.73483 * 13 11 8 42 42 H 0.97004 * 120.00301 * 5.05143 * 14 13 11 43 43 H 1.08996 * 109.47235 * 300.00163 * 17 15 14 44 44 H 1.08998 * 109.47171 * 60.00232 * 17 15 14 45 45 H 0.97005 * 119.99788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0044 5 6 4.7372 1.6236 -0.0088 6 1 4.4062 2.6265 -0.2790 7 6 5.3694 1.6532 1.3841 8 7 5.7284 1.1551 -0.9867 9 6 5.2031 1.2597 -2.3659 10 6 6.5956 1.7945 -2.7457 11 6 6.7325 2.2046 -1.2683 12 1 6.3837 3.2160 -1.0592 13 6 8.1117 1.9140 -0.6731 14 7 9.1206 2.7239 -1.3602 15 6 10.4270 2.5596 -1.0723 16 8 10.7673 1.7410 -0.2447 17 6 11.4650 3.3924 -1.7795 18 16 13.1120 2.9407 -1.1798 19 6 14.0997 4.0351 -2.1449 20 1 13.6308 4.7096 -2.8459 21 6 15.4807 4.0294 -2.0049 22 7 16.0522 3.2070 -1.1509 23 14 16.5279 5.1891 -3.0285 24 1 16.7077 6.4692 -2.2976 25 1 17.8547 4.5699 -3.2760 26 1 15.8538 5.4503 -4.3256 27 7 3.6195 -0.6168 0.0017 28 7 2.2964 -1.0881 0.0045 29 1 2.0093 -2.0146 0.0095 30 1 -0.3632 0.0048 1.0277 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8924 -0.5096 33 1 5.6705 0.6447 1.6679 34 1 6.2439 2.3037 1.3724 35 1 4.6442 2.0319 2.1043 36 1 4.4052 1.9939 -2.4774 37 1 4.9636 0.2975 -2.8188 38 1 7.2957 1.0171 -3.0518 39 1 6.5685 2.6375 -3.4361 40 1 8.1086 2.1612 0.3885 41 1 8.3465 0.8571 -0.7994 42 1 8.8485 3.3785 -2.0224 43 1 11.4070 3.2108 -2.8527 44 1 11.2820 4.4481 -1.5793 45 1 17.0173 3.2033 -1.0528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276793960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = 50.832946 kcal Electronic energy + Delta-G solvation = -26009.090133 eV Core-core repulsion = 22189.430251 eV Total energy + Delta-G solvation = -3819.659882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.22681 -41.37845 -40.27323 -35.98631 -35.03137 -34.56090 -33.36328 -32.62030 -31.57493 -29.10980 -28.72782 -27.98617 -27.60404 -25.03125 -24.18639 -22.18087 -21.76732 -21.06348 -20.63841 -19.80102 -18.89226 -17.83047 -17.46875 -17.33194 -16.85784 -16.71850 -16.47875 -16.01898 -15.96219 -15.42644 -15.10737 -14.85597 -14.73571 -14.59312 -14.36918 -13.77679 -13.69379 -13.54400 -13.44657 -13.16124 -13.14055 -12.90811 -12.86572 -12.81683 -12.62202 -12.54200 -12.14589 -11.90037 -11.70522 -11.66799 -11.12106 -11.11495 -11.10325 -10.94846 -10.48882 -10.24039 -10.08688 -9.86759 -8.64146 -8.32309 -6.10300 0.58829 1.28548 1.44336 1.48467 1.58621 1.65695 1.71810 1.74799 2.15524 2.29937 2.77339 3.01908 3.03518 3.35828 3.49050 3.57692 3.67001 3.83662 4.01185 4.02747 4.10562 4.16467 4.22322 4.32923 4.35652 4.55170 4.57774 4.64316 4.68110 4.69248 4.72102 4.85161 4.88451 4.95249 5.03463 5.15034 5.16022 5.23141 5.28808 5.37936 5.44249 5.47379 5.96147 6.20309 6.22197 6.55229 7.07619 7.08972 7.29352 8.76930 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.041261 B = 0.001678 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.447410 B =16687.381764 C =16956.961115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.571 5.571 4 C 0.226 3.774 5 C 0.144 3.856 6 H 0.086 0.914 7 C -0.135 4.135 8 N -0.476 5.476 9 C 0.012 3.988 10 C -0.130 4.130 11 C 0.032 3.968 12 H 0.113 0.887 13 C 0.144 3.856 14 N -0.705 5.705 15 C 0.534 3.466 16 O -0.568 6.568 17 C -0.127 4.127 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.257 1.257 27 N -0.321 5.321 28 N -0.480 5.480 29 H 0.454 0.546 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.418 0.582 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.950 -2.468 -2.633 37.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.302 5.302 4 C -0.057 4.057 5 C 0.033 3.967 6 H 0.104 0.896 7 C -0.194 4.194 8 N -0.200 5.200 9 C -0.117 4.117 10 C -0.168 4.168 11 C -0.077 4.077 12 H 0.130 0.870 13 C 0.020 3.980 14 N -0.360 5.360 15 C 0.320 3.680 16 O -0.446 6.446 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.181 1.181 27 N -0.150 5.150 28 N -0.200 5.200 29 H 0.302 0.698 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -35.520 -4.577 -0.899 35.825 hybrid contribution -0.204 1.427 -1.468 2.057 sum -35.724 -3.150 -2.366 35.941 Atomic orbital electron populations 1.20638 0.80149 1.06538 1.06003 1.25238 0.98212 0.82074 0.93729 1.70340 1.01330 1.31186 1.27299 1.24045 0.93085 0.90257 0.98336 1.20471 0.86596 0.93782 0.95837 0.89644 1.21750 1.01118 1.02616 0.93889 1.68541 1.08903 1.38713 1.03874 1.23748 0.97314 1.01459 0.89142 1.23337 0.96176 1.02188 0.95120 1.23642 0.91756 0.96104 0.96200 0.86965 1.20985 0.85951 0.95104 0.95960 1.45498 1.04203 1.42064 1.44237 1.20070 0.83647 0.82510 0.81776 1.90704 1.81473 1.37169 1.35291 1.23358 0.96883 1.03424 1.04186 1.85633 0.96570 1.54054 1.56560 1.23221 0.94385 1.24723 1.27036 0.89754 1.26133 0.98478 0.97760 0.96803 1.70192 1.11376 1.37562 1.35728 0.84945 0.76922 0.77582 0.78470 1.19309 1.20422 1.18106 1.78094 0.97803 1.12784 1.26350 1.48087 1.03633 1.11060 1.57260 0.69816 0.87432 0.88017 0.87092 0.93056 0.90591 0.91305 0.90134 0.90608 0.89866 0.87830 0.92374 0.92722 0.74513 0.87032 0.86932 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.16 10.51 71.24 0.75 0.59 16 2 C 0.29 3.71 8.24 138.23 1.14 4.85 16 3 N -0.57 -11.27 11.19 -179.73 -2.01 -13.28 16 4 C 0.23 4.90 6.29 138.63 0.87 5.77 16 5 C 0.14 2.76 2.21 44.16 0.10 2.86 16 6 H 0.09 1.42 7.69 -2.38 -0.02 1.41 16 7 C -0.14 -2.61 9.30 71.98 0.67 -1.94 16 8 N -0.48 -9.31 5.76 -863.11 -4.97 -14.28 16 9 C 0.01 0.19 7.34 86.40 0.63 0.83 16 10 C -0.13 -1.87 7.64 31.24 0.24 -1.63 16 11 C 0.03 0.53 2.72 45.02 0.12 0.65 16 12 H 0.11 1.35 7.73 -2.38 -0.02 1.34 16 13 C 0.14 3.46 5.67 86.38 0.49 3.94 16 14 N -0.71 -17.55 5.41 -463.06 -2.51 -20.05 16 15 C 0.53 19.86 7.85 87.66 0.69 20.55 16 16 O -0.57 -27.14 15.86 -3.03 -0.05 -27.19 16 17 C -0.13 -5.00 6.16 71.24 0.44 -4.57 16 18 S -0.16 -8.70 20.57 -56.49 -1.16 -9.87 16 19 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.74 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 23 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 N -0.32 -7.28 12.78 -51.34 -0.66 -7.93 16 28 N -0.48 -6.74 7.45 -50.71 -0.38 -7.12 16 29 H 0.45 3.00 8.96 -213.09 -1.91 1.09 16 30 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.36 6.53 -2.39 -0.02 1.35 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.15 7.85 -2.39 -0.02 1.13 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.47 8.10 -2.38 -0.02 1.45 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.50 7.13 -2.39 -0.02 1.49 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.42 7.07 8.41 -92.70 -0.78 6.29 16 43 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -86.83 391.93 -3.83 -90.67 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -1.66 Total: 17.04 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.25 Total: 2.51 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -10.23 Total: -118.89 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.87 kcal Total: -86.83 -3.83 -90.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276793960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.498 kcal (2) G-P(sol) polarization free energy of solvation -86.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds