Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.46912 * 2 1 4 4 C 1.35636 * 125.67837 * 258.18723 * 3 2 1 5 5 C 1.35519 * 108.84936 * 180.29550 * 4 3 2 6 6 Cl 1.73603 * 126.07290 * 179.71368 * 5 4 3 7 7 C 1.39891 * 107.85387 * 359.72981 * 5 4 3 8 8 C 1.37640 * 125.67460 * 78.02332 * 3 2 1 9 9 C 1.46669 * 126.22166 * 359.97048 * 8 3 2 10 10 O 1.21693 * 120.00266 * 2.00886 * 9 8 3 11 11 N 1.34778 * 119.99416 * 182.00964 * 9 8 3 12 12 C 1.46491 * 120.00558 * 354.02461 * 11 9 8 13 13 C 1.46507 * 119.99576 * 174.02748 * 11 9 8 14 14 H 1.09003 * 109.46987 * 359.97438 * 13 11 9 15 15 C 1.53002 * 109.46943 * 240.00109 * 13 11 9 16 16 N 1.46498 * 109.47491 * 54.99836 * 15 13 11 17 17 C 1.36937 * 120.00182 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99765 * 179.97438 * 17 16 15 20 20 N 1.31611 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99446 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46834 * 90.00250 * 21 19 17 23 23 H 1.48501 * 109.46960 * 210.00110 * 21 19 17 24 24 H 1.48495 * 109.47148 * 330.00434 * 21 19 17 25 25 C 1.52996 * 109.47371 * 119.99693 * 13 11 9 26 26 C 1.53002 * 117.49617 * 116.24959 * 25 13 11 27 27 C 1.52997 * 117.50211 * 184.91244 * 25 13 11 28 28 H 1.09003 * 109.47781 * 64.92805 * 1 2 3 29 29 H 1.09005 * 109.47478 * 184.92729 * 1 2 3 30 30 H 1.08997 * 109.47277 * 304.92649 * 1 2 3 31 31 H 1.09003 * 109.46874 * 240.00356 * 2 1 3 32 32 H 1.08993 * 109.47356 * 120.00334 * 2 1 3 33 33 H 1.07997 * 125.57238 * 359.97438 * 4 3 2 34 34 H 1.07996 * 126.44819 * 179.97438 * 7 5 4 35 35 H 1.09004 * 109.47099 * 293.44428 * 12 11 9 36 36 H 1.09001 * 109.47505 * 53.44048 * 12 11 9 37 37 H 1.09005 * 109.47635 * 173.44344 * 12 11 9 38 38 H 1.09003 * 109.46898 * 175.00202 * 15 13 11 39 39 H 1.09001 * 109.46920 * 294.99841 * 15 13 11 40 40 H 0.97001 * 119.99946 * 359.97438 * 16 15 13 41 41 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 42 42 H 1.09008 * 115.54703 * 330.58615 * 25 13 11 43 43 H 1.09000 * 117.49510 * 215.00240 * 26 25 13 44 44 H 1.08994 * 117.50059 * 0.02570 * 26 25 13 45 45 H 1.08997 * 117.49595 * 359.97438 * 27 25 13 46 46 H 1.09004 * 117.49840 * 144.99844 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4945 2.0519 -1.0784 5 6 2.8572 3.2995 -0.6931 6 17 3.5298 4.5303 -1.7161 7 6 2.5938 3.4191 0.6756 8 6 2.0670 2.2153 1.0938 9 6 1.6418 1.8823 2.4574 10 8 1.2295 0.7656 2.7106 11 7 1.7077 2.8130 3.4300 12 6 2.3243 4.1138 3.1586 13 6 1.1626 2.5237 4.7587 14 1 0.7483 1.5155 4.7699 15 6 0.0595 3.5315 5.0879 16 7 -0.9499 3.5150 4.0262 17 6 -2.0393 4.3410 4.1043 18 1 -2.1542 5.0049 4.9484 19 6 -2.9953 4.3257 3.0980 20 7 -2.8550 3.5170 2.0691 21 14 -4.4818 5.4519 3.2049 22 1 -4.1701 6.7467 2.5477 23 1 -5.6358 4.8148 2.5210 24 1 -4.8211 5.6897 4.6308 25 6 2.2773 2.6289 5.8013 26 6 2.1462 3.7178 6.8682 27 6 1.9345 2.2488 7.2431 28 1 -0.3635 0.4355 -0.9308 29 1 -0.3634 -1.0239 0.0883 30 1 -0.3634 0.5883 0.8425 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.5766 1.6547 -2.0794 34 1 2.7703 4.2902 1.2892 35 1 3.3905 3.9794 2.9760 36 1 1.8588 4.5604 2.2800 37 1 2.1826 4.7695 4.0177 38 1 -0.4063 3.2635 6.0363 39 1 0.4904 4.5298 5.1641 40 1 -0.8461 2.9196 3.2676 41 1 -3.5229 3.5067 1.3657 42 1 3.2796 2.3931 5.4433 43 1 3.0621 4.1981 7.2122 44 1 1.2656 4.3587 6.8276 45 1 0.9145 1.9240 7.4489 46 1 2.7111 1.7628 7.8337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277726755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = 74.500123 kcal Electronic energy + Delta-G solvation = -28622.271959 eV Core-core repulsion = 24769.301906 eV Total energy + Delta-G solvation = -3852.970053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47849 -39.48782 -37.54997 -36.31416 -35.26659 -34.26601 -33.52264 -31.27697 -29.73154 -29.02302 -27.68620 -26.73043 -24.46514 -23.40209 -22.63216 -22.10276 -21.78324 -20.77321 -19.23094 -18.81924 -17.12254 -17.02872 -16.38908 -16.01291 -15.47544 -14.94672 -14.82451 -14.44148 -14.35690 -14.11343 -13.86404 -13.43998 -13.25309 -13.19503 -12.89445 -12.87069 -12.60790 -12.52452 -12.21224 -11.87492 -11.51705 -11.35007 -11.26966 -11.15852 -11.04571 -10.97561 -10.79867 -10.74976 -10.61544 -10.33997 -10.08746 -9.77347 -9.68961 -9.49520 -8.85929 -8.55021 -8.32144 -8.04323 -6.89558 -5.72750 -3.01933 1.61881 2.21658 2.60309 2.84184 3.44292 3.48524 3.49551 3.51226 3.62992 3.96717 4.58519 4.70683 4.80302 4.87283 4.95362 5.07959 5.12325 5.19672 5.29966 5.32453 5.38935 5.48419 5.57655 5.64124 5.69732 5.75913 5.83350 5.85876 5.89400 5.95347 5.96043 6.03106 6.15721 6.26017 6.28092 6.37641 6.44642 6.53077 6.57759 6.68143 6.88999 6.99509 7.18985 7.68560 7.71090 8.44254 8.47901 9.56232 10.13791 10.49037 11.49146 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007702 B = 0.004763 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.435617 B = 5876.746127 C = 7361.852817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.398 5.398 4 C 0.026 3.974 5 C -0.123 4.123 6 Cl -0.059 7.059 7 C -0.153 4.153 8 C -0.017 4.017 9 C 0.593 3.407 10 O -0.546 6.546 11 N -0.579 5.579 12 C 0.068 3.932 13 C 0.165 3.835 14 H 0.105 0.895 15 C 0.143 3.857 16 N -0.727 5.727 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.158 4.158 26 C -0.183 4.183 27 C -0.173 4.173 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.717 -3.558 -1.734 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.071 5.071 4 C -0.111 4.111 5 C -0.157 4.157 6 Cl -0.031 7.031 7 C -0.178 4.178 8 C -0.131 4.131 9 C 0.382 3.618 10 O -0.426 6.426 11 N -0.309 5.309 12 C -0.075 4.075 13 C 0.062 3.938 14 H 0.122 0.878 15 C 0.015 3.985 16 N -0.371 5.371 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.575 5.575 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.178 4.178 26 C -0.220 4.220 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.190 0.810 34 H 0.193 0.807 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.278 -4.311 -1.589 15.954 hybrid contribution -0.810 0.704 -0.536 1.200 sum 14.468 -3.608 -2.125 15.062 Atomic orbital electron populations 1.22088 0.92996 1.03316 1.03881 1.22046 0.96816 0.78600 1.04211 1.44003 1.44983 1.11720 1.06438 1.21620 1.04453 0.92362 0.92640 1.19921 1.11876 0.91305 0.92549 1.98302 1.84228 1.53202 1.67321 1.22350 1.03574 0.97934 0.93956 1.19969 1.12156 0.91659 0.89354 1.16789 0.77759 0.84389 0.82863 1.90773 1.48039 1.21061 1.82691 1.47180 1.58427 1.14542 1.10770 1.22385 0.96610 0.85058 1.03440 1.20887 0.91867 1.01851 0.79238 0.87753 1.21134 0.88973 0.95503 0.92885 1.42281 1.22870 1.48498 1.23462 1.19165 0.98503 1.14868 1.04648 0.91324 1.24719 0.99015 0.99790 0.97153 1.69676 1.36275 1.40420 1.11108 0.86238 0.82793 0.80195 0.77229 1.21768 1.21857 1.20823 1.22592 0.99898 1.04945 0.90340 1.23203 1.03697 0.92081 1.03024 1.22950 1.02878 0.98289 0.96968 0.92479 0.90926 0.89941 0.89525 0.88014 0.81027 0.80721 0.92358 0.89856 0.90234 0.95378 0.95575 0.78078 0.93649 0.87812 0.89219 0.87475 0.88429 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.02 37.15 0.37 -2.06 16 2 C 0.10 1.33 6.08 -4.05 -0.02 1.31 16 3 N -0.40 -5.87 2.77 -112.83 -0.31 -6.18 16 4 C 0.03 0.34 11.34 -16.84 -0.19 0.15 16 5 C -0.12 -1.75 6.66 -39.93 -0.27 -2.01 16 6 Cl -0.06 -0.75 29.30 -51.86 -1.52 -2.27 16 7 C -0.15 -2.31 8.87 -39.09 -0.35 -2.66 16 8 C -0.02 -0.29 6.80 -81.98 -0.56 -0.85 16 9 C 0.59 10.87 7.32 -12.86 -0.09 10.77 16 10 O -0.55 -11.09 13.21 5.20 0.07 -11.02 16 11 N -0.58 -9.66 2.24 -175.48 -0.39 -10.05 16 12 C 0.07 0.94 7.84 59.84 0.47 1.41 16 13 C 0.16 2.79 2.50 -67.93 -0.17 2.62 16 14 H 0.10 2.03 6.91 -51.93 -0.36 1.67 16 15 C 0.14 2.81 4.13 -4.04 -0.02 2.80 16 16 N -0.73 -18.39 5.43 -59.91 -0.33 -18.71 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 21 Si 0.90 22.57 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.16 -2.09 5.36 -90.62 -0.49 -2.58 16 26 C -0.18 -2.16 9.50 -26.69 -0.25 -2.41 16 27 C -0.17 -2.06 10.00 -26.69 -0.27 -2.32 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.61 7.16 -51.93 -0.37 1.24 16 31 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.10 1.39 6.98 -51.93 -0.36 1.03 16 33 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.18 2.36 4.06 -52.49 -0.21 2.15 16 35 H 0.06 0.66 7.41 -51.93 -0.38 0.27 16 36 H 0.08 1.26 5.39 -51.93 -0.28 0.98 16 37 H 0.08 1.05 6.68 -51.93 -0.35 0.70 16 38 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 39 H 0.03 0.50 5.80 -51.93 -0.30 0.20 16 40 H 0.39 10.61 7.06 -40.82 -0.29 10.32 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.11 1.39 5.80 -51.93 -0.30 1.09 16 45 H 0.10 1.23 7.98 -51.93 -0.41 0.81 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -32.49 380.63 -9.64 -42.14 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.52 Total: 13.41 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.08 Total: -3.09 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.31 Total: -62.46 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.52 Total: -2.27 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.49 -9.64 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277726755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.635 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds