Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.46912 * 2 1 4 4 C 1.35636 * 125.67837 * 258.18723 * 3 2 1 5 5 C 1.35519 * 108.84936 * 180.29550 * 4 3 2 6 6 Cl 1.73603 * 126.07290 * 179.71368 * 5 4 3 7 7 C 1.39891 * 107.85387 * 359.72981 * 5 4 3 8 8 C 1.37640 * 125.67460 * 78.02332 * 3 2 1 9 9 C 1.46669 * 126.22166 * 359.97048 * 8 3 2 10 10 O 1.21693 * 120.00266 * 2.00886 * 9 8 3 11 11 N 1.34778 * 119.99416 * 182.00964 * 9 8 3 12 12 C 1.46491 * 120.00558 * 354.02461 * 11 9 8 13 13 C 1.46507 * 119.99576 * 174.02748 * 11 9 8 14 14 H 1.09003 * 109.46987 * 359.97438 * 13 11 9 15 15 C 1.53002 * 109.46943 * 240.00109 * 13 11 9 16 16 N 1.46498 * 109.47491 * 54.99836 * 15 13 11 17 17 C 1.36937 * 120.00182 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99649 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99765 * 179.97438 * 17 16 15 20 20 N 1.31611 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99446 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46834 * 90.00250 * 21 19 17 23 23 H 1.48501 * 109.46960 * 210.00110 * 21 19 17 24 24 H 1.48495 * 109.47148 * 330.00434 * 21 19 17 25 25 C 1.52996 * 109.47371 * 119.99693 * 13 11 9 26 26 C 1.53002 * 117.49617 * 116.24959 * 25 13 11 27 27 C 1.52997 * 117.50211 * 184.91244 * 25 13 11 28 28 H 1.09003 * 109.47781 * 64.92805 * 1 2 3 29 29 H 1.09005 * 109.47478 * 184.92729 * 1 2 3 30 30 H 1.08997 * 109.47277 * 304.92649 * 1 2 3 31 31 H 1.09003 * 109.46874 * 240.00356 * 2 1 3 32 32 H 1.08993 * 109.47356 * 120.00334 * 2 1 3 33 33 H 1.07997 * 125.57238 * 359.97438 * 4 3 2 34 34 H 1.07996 * 126.44819 * 179.97438 * 7 5 4 35 35 H 1.09004 * 109.47099 * 293.44428 * 12 11 9 36 36 H 1.09001 * 109.47505 * 53.44048 * 12 11 9 37 37 H 1.09005 * 109.47635 * 173.44344 * 12 11 9 38 38 H 1.09003 * 109.46898 * 175.00202 * 15 13 11 39 39 H 1.09001 * 109.46920 * 294.99841 * 15 13 11 40 40 H 0.97001 * 119.99946 * 359.97438 * 16 15 13 41 41 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 42 42 H 1.09008 * 115.54703 * 330.58615 * 25 13 11 43 43 H 1.09000 * 117.49510 * 215.00240 * 26 25 13 44 44 H 1.08994 * 117.50059 * 0.02570 * 26 25 13 45 45 H 1.08997 * 117.49595 * 359.97438 * 27 25 13 46 46 H 1.09004 * 117.49840 * 144.99844 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4945 2.0519 -1.0784 5 6 2.8572 3.2995 -0.6931 6 17 3.5298 4.5303 -1.7161 7 6 2.5938 3.4191 0.6756 8 6 2.0670 2.2153 1.0938 9 6 1.6418 1.8823 2.4574 10 8 1.2295 0.7656 2.7106 11 7 1.7077 2.8130 3.4300 12 6 2.3243 4.1138 3.1586 13 6 1.1626 2.5237 4.7587 14 1 0.7483 1.5155 4.7699 15 6 0.0595 3.5315 5.0879 16 7 -0.9499 3.5150 4.0262 17 6 -2.0393 4.3410 4.1043 18 1 -2.1542 5.0049 4.9484 19 6 -2.9953 4.3257 3.0980 20 7 -2.8550 3.5170 2.0691 21 14 -4.4818 5.4519 3.2049 22 1 -4.1701 6.7467 2.5477 23 1 -5.6358 4.8148 2.5210 24 1 -4.8211 5.6897 4.6308 25 6 2.2773 2.6289 5.8013 26 6 2.1462 3.7178 6.8682 27 6 1.9345 2.2488 7.2431 28 1 -0.3635 0.4355 -0.9308 29 1 -0.3634 -1.0239 0.0883 30 1 -0.3634 0.5883 0.8425 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.5766 1.6547 -2.0794 34 1 2.7703 4.2902 1.2892 35 1 3.3905 3.9794 2.9760 36 1 1.8588 4.5604 2.2800 37 1 2.1826 4.7695 4.0177 38 1 -0.4063 3.2635 6.0363 39 1 0.4904 4.5298 5.1641 40 1 -0.8461 2.9196 3.2676 41 1 -3.5229 3.5067 1.3657 42 1 3.2796 2.3931 5.4433 43 1 3.0621 4.1981 7.2122 44 1 1.2656 4.3587 6.8276 45 1 0.9145 1.9240 7.4489 46 1 2.7111 1.7628 7.8337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277726755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = 56.058823 kcal Electronic energy + Delta-G solvation = -28623.071634 eV Core-core repulsion = 24769.301906 eV Total energy + Delta-G solvation = -3853.769728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.62482 -40.77163 -38.80549 -37.35021 -36.54223 -36.04996 -34.74952 -33.15330 -31.12570 -30.17874 -29.10798 -28.03691 -26.19391 -24.56208 -24.19790 -23.21861 -22.98196 -21.89131 -20.46862 -20.14948 -19.07077 -18.25122 -17.71908 -17.31187 -16.74393 -16.43153 -16.08202 -15.97122 -15.50226 -15.33594 -15.15153 -14.97478 -14.75885 -14.54883 -14.39778 -14.07876 -13.83937 -13.70402 -13.58889 -13.07192 -13.05129 -12.93561 -12.71937 -12.40636 -12.33859 -12.25154 -12.20319 -12.15419 -11.98662 -11.76276 -11.72301 -11.35639 -10.98609 -10.94801 -10.73590 -9.70772 -9.61525 -9.16601 -8.99517 -7.92843 -5.22527 0.41477 1.15197 1.44909 1.46737 1.50599 1.54906 1.66602 2.32297 2.33746 2.54679 2.93682 3.40221 3.50325 3.69692 3.79861 3.94948 3.98506 4.08951 4.09381 4.13607 4.21367 4.26550 4.30563 4.35248 4.44287 4.53468 4.57438 4.69780 4.73056 4.78745 4.83852 4.88180 4.90872 5.01427 5.07743 5.12247 5.23054 5.25795 5.34317 5.43839 5.48691 5.63852 5.79195 6.12814 6.25732 6.38817 7.13574 7.32999 8.08269 8.31892 9.29614 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007702 B = 0.004763 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.435617 B = 5876.746127 C = 7361.852817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.106 3.894 3 N -0.404 5.404 4 C 0.043 3.957 5 C -0.142 4.142 6 Cl -0.046 7.046 7 C -0.150 4.150 8 C -0.054 4.054 9 C 0.581 3.419 10 O -0.580 6.580 11 N -0.580 5.580 12 C 0.067 3.933 13 C 0.173 3.827 14 H 0.071 0.929 15 C 0.146 3.854 16 N -0.740 5.740 17 C -0.242 4.242 18 H 0.078 0.922 19 C -0.073 4.073 20 N -0.964 5.964 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.268 1.268 25 C -0.164 4.164 26 C -0.168 4.168 27 C -0.169 4.169 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.210 0.790 34 H 0.186 0.814 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.029 0.971 39 H 0.042 0.958 40 H 0.370 0.630 41 H 0.247 0.753 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.427 -2.611 -1.764 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.077 5.077 4 C -0.095 4.095 5 C -0.174 4.174 6 Cl -0.017 7.017 7 C -0.175 4.175 8 C -0.168 4.168 9 C 0.372 3.628 10 O -0.463 6.463 11 N -0.310 5.310 12 C -0.074 4.074 13 C 0.070 3.930 14 H 0.089 0.911 15 C 0.019 3.981 16 N -0.382 5.382 17 C -0.374 4.374 18 H 0.096 0.904 19 C -0.266 4.266 20 N -0.615 5.615 21 Si 0.800 3.200 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.193 1.193 25 C -0.184 4.184 26 C -0.205 4.205 27 C -0.206 4.206 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.227 0.773 34 H 0.203 0.797 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.202 0.798 41 H 0.056 0.944 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.020 -3.323 -1.557 17.412 hybrid contribution -1.310 0.418 -0.516 1.469 sum 15.710 -2.906 -2.074 16.111 Atomic orbital electron populations 1.21990 0.94765 1.03330 1.01428 1.22136 0.95173 0.78213 1.05871 1.44206 1.44942 1.12214 1.06376 1.22266 1.01920 0.91829 0.93457 1.20060 1.12681 0.92246 0.92453 1.98303 1.84024 1.52696 1.66694 1.22571 1.02525 0.97616 0.94836 1.19913 1.14492 0.93073 0.89284 1.17191 0.77459 0.84269 0.83885 1.90733 1.49734 1.22480 1.83338 1.47276 1.58038 1.15244 1.10407 1.22517 0.98006 0.83762 1.03137 1.20650 0.92550 0.99015 0.80833 0.91131 1.21289 0.88639 0.97032 0.91140 1.42493 1.23686 1.47809 1.24260 1.19591 0.98927 1.14449 1.04386 0.90424 1.25543 1.02116 1.01730 0.97180 1.69868 1.37127 1.42529 1.11973 0.85179 0.78997 0.78116 0.77692 1.21321 1.22629 1.19309 1.22415 0.98792 1.07262 0.89918 1.23230 1.04331 0.91709 1.01236 1.23042 1.03019 0.98719 0.95842 0.92073 0.89144 0.95584 0.84800 0.89311 0.77304 0.79729 0.89330 0.91248 0.89415 0.95357 0.94022 0.79832 0.94415 0.86638 0.86484 0.88774 0.89691 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 10.02 71.98 0.72 -4.08 16 2 C 0.11 2.67 6.08 86.38 0.52 3.20 16 3 N -0.40 -11.75 2.77 -510.89 -1.42 -13.17 16 4 C 0.04 1.04 11.34 83.48 0.95 1.99 16 5 C -0.14 -3.81 6.66 22.04 0.15 -3.67 16 6 Cl -0.05 -1.07 29.30 -2.72 -0.08 -1.15 16 7 C -0.15 -4.48 8.87 22.59 0.20 -4.28 16 8 C -0.05 -1.85 6.80 40.35 0.27 -1.57 16 9 C 0.58 22.39 7.32 86.44 0.63 23.02 16 10 O -0.58 -25.31 13.21 -4.33 -0.06 -25.37 16 11 N -0.58 -19.88 2.24 -827.30 -1.86 -21.74 16 12 C 0.07 1.84 7.84 127.77 1.00 2.84 16 13 C 0.17 6.02 2.50 44.99 0.11 6.14 16 14 H 0.07 2.93 6.91 -2.39 -0.02 2.91 16 15 C 0.15 5.81 4.13 86.38 0.36 6.16 16 16 N -0.74 -38.63 5.43 -343.45 -1.87 -40.50 16 17 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 19 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.96 -60.87 13.06 21.65 0.28 -60.59 16 21 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C -0.16 -4.18 5.36 -10.80 -0.06 -4.24 16 26 C -0.17 -3.58 9.50 30.62 0.29 -3.28 16 27 C -0.17 -3.73 10.00 30.62 0.31 -3.43 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.02 1.07 7.16 -2.39 -0.02 1.06 16 31 H 0.13 2.09 8.10 -2.39 -0.02 2.07 16 32 H 0.09 2.49 6.98 -2.39 -0.02 2.48 16 33 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.19 4.90 4.06 -2.91 -0.01 4.89 16 35 H 0.09 1.87 7.41 -2.39 -0.02 1.85 16 36 H 0.07 2.11 5.39 -2.39 -0.01 2.09 16 37 H 0.09 2.21 6.68 -2.38 -0.02 2.19 16 38 H 0.03 1.14 7.59 -2.39 -0.02 1.12 16 39 H 0.04 1.56 5.80 -2.39 -0.01 1.55 16 40 H 0.37 21.48 7.06 -92.71 -0.65 20.82 16 41 H 0.25 15.23 8.31 -92.71 -0.77 14.45 16 42 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 43 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.09 2.27 5.80 -2.39 -0.01 2.26 16 45 H 0.08 2.10 7.98 -2.39 -0.02 2.08 16 46 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.93 380.63 4.15 -69.77 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.36 Total: 41.52 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.76 Total: 2.17 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -4.86 Total: -135.99 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.06 Total: -25.37 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -73.93 4.15 -69.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277726755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.832 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds