Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.87155 * 2 1 4 4 C 1.54329 * 110.01316 * 238.90029 * 2 1 3 5 5 C 1.55156 * 102.94072 * 262.70532 * 4 2 1 6 6 H 1.08997 * 111.00427 * 82.57310 * 5 4 2 7 7 N 1.46901 * 111.00026 * 206.42044 * 5 4 2 8 8 C 1.46900 * 111.00039 * 204.99946 * 7 5 4 9 9 C 1.50697 * 109.47090 * 180.02562 * 8 7 5 10 10 N 1.30524 * 126.34588 * 90.02326 * 9 8 7 11 11 N 1.28595 * 109.67188 * 179.97438 * 10 9 8 12 12 C 1.30518 * 109.67600 * 0.02562 * 11 10 9 13 13 N 1.35492 * 107.30546 * 359.76469 * 12 11 10 14 14 C 1.46506 * 126.98266 * 180.22965 * 13 12 11 15 15 C 1.55124 * 101.48615 * 324.32969 * 5 4 2 16 16 N 1.47025 * 109.88438 * 121.01644 * 2 1 3 17 17 C 1.34774 * 125.64574 * 300.59587 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47409 * 89.99815 * 25 23 21 27 27 H 1.48504 * 109.46732 * 209.99538 * 25 23 21 28 28 H 1.48503 * 109.47095 * 329.99265 * 25 23 21 29 29 H 1.08998 * 109.47205 * 300.43873 * 1 2 3 30 30 H 1.09003 * 109.47289 * 60.43837 * 1 2 3 31 31 H 1.08998 * 109.47009 * 180.44211 * 1 2 3 32 32 H 1.08998 * 110.71315 * 21.06706 * 4 2 1 33 33 H 1.08998 * 110.71886 * 144.34033 * 4 2 1 34 34 H 1.00900 * 111.00113 * 328.95872 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99918 * 8 7 5 36 36 H 1.08997 * 109.47008 * 60.00250 * 8 7 5 37 37 H 1.07997 * 126.34981 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.46979 * 270.15423 * 14 13 12 39 39 H 1.09001 * 109.46670 * 30.15870 * 14 13 12 40 40 H 1.08999 * 109.47094 * 150.15552 * 14 13 12 41 41 H 1.09006 * 110.49792 * 278.45237 * 15 5 4 42 42 H 1.08998 * 110.34245 * 156.06652 * 15 5 4 43 43 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 44 44 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 45 45 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 6 2.3574 -2.1680 -0.6902 6 1 1.4520 -2.7741 -0.6591 7 7 3.4046 -2.8297 -1.4800 8 6 3.2920 -4.2912 -1.3841 9 6 4.3805 -4.9338 -2.2045 10 7 5.5742 -5.2580 -1.7878 11 7 6.2409 -5.7858 -2.7524 12 6 5.5032 -5.8218 -3.8285 13 7 4.2998 -5.2866 -3.5103 14 6 3.1465 -5.1206 -4.3983 15 6 2.8643 -1.8433 0.7395 16 7 2.0300 -0.7124 1.1849 17 6 1.7729 -0.3828 2.4662 18 8 1.0744 0.5763 2.7172 19 6 2.3545 -1.2053 3.5871 20 16 1.8319 -0.5144 5.1764 21 6 2.6303 -1.6368 6.2752 22 1 3.2236 -2.4486 5.8809 23 6 2.4959 -1.4783 7.6476 24 7 1.7724 -0.4892 8.1281 25 14 3.3429 -2.6678 8.8125 26 1 4.7003 -2.1607 9.1372 27 1 2.5478 -2.7884 10.0610 28 1 3.4536 -3.9999 8.1655 29 1 -0.3633 0.5206 0.8860 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 1.2961 -0.7905 -2.0199 33 1 2.9684 -0.2808 -1.6162 34 1 3.3773 -2.5272 -2.4422 35 1 3.3946 -4.5960 -0.3426 36 1 2.3188 -4.6061 -1.7606 37 1 5.7961 -6.2103 -4.7927 38 1 3.2042 -4.1501 -4.8911 39 1 3.1498 -5.9104 -5.1495 40 1 2.2275 -5.1778 -3.8149 41 1 3.9148 -1.5534 0.7154 42 1 2.7219 -2.7016 1.3961 43 1 2.0021 -2.2334 3.5040 44 1 3.4425 -1.1880 3.5239 45 1 1.6787 -0.3783 9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278344364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = 58.217392 kcal Electronic energy + Delta-G solvation = -26547.381072 eV Core-core repulsion = 22728.041404 eV Total energy + Delta-G solvation = -3819.339668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49746 -40.15433 -37.84770 -35.96010 -35.23587 -32.39277 -32.22981 -31.74871 -29.47011 -28.67908 -28.20820 -25.99601 -25.87128 -25.43491 -22.78659 -22.37485 -21.32319 -20.88128 -19.06321 -17.73296 -17.64287 -17.00240 -16.62686 -16.33461 -16.00076 -15.50639 -15.21167 -14.82200 -14.76963 -14.67468 -14.11740 -14.04502 -13.86749 -13.64681 -13.32963 -13.10012 -13.02196 -12.75460 -12.57305 -12.51247 -12.05138 -11.83187 -11.73147 -11.38929 -11.26186 -11.02328 -10.98159 -10.85926 -10.72027 -10.68839 -10.65949 -9.77724 -9.68514 -9.35854 -9.04700 -9.02738 -8.48518 -8.19844 -6.46538 -6.18079 -3.88413 1.32184 1.96343 2.50792 2.89693 3.09423 3.26266 3.28550 3.33588 3.49929 3.70926 3.84304 3.95367 4.11280 4.17385 4.24291 4.31545 4.35353 4.42036 4.63812 4.67318 4.89654 4.99942 5.06250 5.10093 5.17205 5.21080 5.30303 5.38834 5.41216 5.49638 5.54363 5.63073 5.69772 5.71015 5.77276 5.93063 6.01180 6.19132 6.25807 6.32235 6.42643 6.56166 6.70528 7.63787 7.70562 8.38738 8.39411 8.59795 9.27503 10.89352 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.002501 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.671014 B =11193.613480 C =13344.928916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.129 4.129 5 C 0.074 3.926 6 H 0.069 0.931 7 N -0.668 5.668 8 C 0.147 3.853 9 C 0.177 3.823 10 N -0.270 5.270 11 N -0.296 5.296 12 C 0.149 3.851 13 N -0.479 5.479 14 C 0.070 3.930 15 C 0.112 3.888 16 N -0.623 5.623 17 C 0.551 3.449 18 O -0.514 6.514 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.344 0.656 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.218 0.782 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -8.848 -31.485 32.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.036 4.036 6 H 0.087 0.913 7 N -0.301 5.301 8 C 0.016 3.984 9 C -0.090 4.090 10 N -0.111 5.111 11 N -0.135 5.135 12 C -0.139 4.139 13 N -0.171 5.171 14 C -0.073 4.073 15 C -0.012 4.012 16 N -0.361 5.361 17 C 0.340 3.660 18 O -0.388 6.388 19 C -0.298 4.298 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.235 0.765 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.005 -7.449 -29.447 30.375 hybrid contribution -0.438 -2.005 -1.231 2.393 sum -0.442 -9.453 -30.678 32.104 Atomic orbital electron populations 1.22166 0.94746 1.02156 1.03134 1.21383 0.94671 0.96470 0.83924 0.90641 1.22915 1.02070 0.94538 0.97227 1.22738 0.92159 0.94555 0.94139 0.91304 1.60226 1.49658 1.04026 1.16153 1.20305 0.90942 0.87172 1.00013 1.24689 0.98019 1.03330 0.83005 1.74349 1.01267 1.13170 1.22294 1.74338 1.25707 1.16746 0.96708 1.26483 0.82683 1.02366 1.02329 1.46266 1.13848 1.46174 1.10789 1.22142 0.86740 1.04250 0.94209 1.22287 0.95732 0.89563 0.93605 1.48540 1.51758 1.30943 1.04845 1.19999 0.79997 0.84700 0.81342 1.90687 1.37398 1.28151 1.82551 1.23522 1.03909 1.02457 0.99876 1.85359 1.66929 1.40516 0.90677 1.22865 1.36354 1.15881 0.93067 0.90896 1.24990 0.95238 0.96003 0.97361 1.70022 1.37360 1.29356 1.13636 0.86170 0.79234 0.80555 0.79575 1.20240 1.20803 1.19646 0.90454 0.92149 0.92780 0.90062 0.89574 0.83726 0.86851 0.92999 0.76529 0.89757 0.88720 0.89157 0.90007 0.90485 0.89394 0.89199 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.07 37.16 0.34 -1.50 16 2 C 0.14 1.58 3.49 -66.95 -0.23 1.34 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -0.92 5.90 -24.89 -0.15 -1.07 16 5 C 0.07 0.55 3.40 -65.45 -0.22 0.33 16 6 H 0.07 0.47 7.83 -51.93 -0.41 0.06 16 7 N -0.67 -4.49 6.40 -105.61 -0.68 -5.17 16 8 C 0.15 0.97 5.90 -4.98 -0.03 0.94 16 9 C 0.18 1.55 7.54 -154.98 -1.17 0.38 16 10 N -0.27 -3.49 12.21 32.80 0.40 -3.09 16 11 N -0.30 -3.56 12.21 29.69 0.36 -3.20 16 12 C 0.15 1.05 12.74 -89.95 -1.15 -0.10 16 13 N -0.48 -2.73 3.15 -122.69 -0.39 -3.12 16 14 C 0.07 0.06 11.04 59.85 0.66 0.72 16 15 C 0.11 1.25 6.40 -2.42 -0.02 1.23 16 16 N -0.62 -8.84 3.08 -162.88 -0.50 -9.34 16 17 C 0.55 10.62 7.65 -10.98 -0.08 10.53 16 18 O -0.51 -11.72 14.75 5.56 0.08 -11.64 16 19 C -0.15 -3.07 5.16 36.01 0.19 -2.89 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 22 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 25 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.08 1.15 6.74 -51.93 -0.35 0.80 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.41 7.83 -51.93 -0.41 0.00 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.34 1.74 8.43 -39.29 -0.33 1.41 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.21 7.15 -51.93 -0.37 -0.16 16 37 H 0.22 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 39 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 40 H 0.09 0.00 7.19 -51.93 -0.37 -0.37 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.86 7.48 -51.93 -0.39 0.48 16 43 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 44 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -39.22 387.70 -9.85 -49.07 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.81 Total: -3.30 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.66 Total: -3.18 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.07 Total: -49.64 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.22 -9.85 -49.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278344364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.285 kcal (2) G-P(sol) polarization free energy of solvation -39.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds