Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30831 * 125.96405 * 2 1 4 4 C 1.33235 * 109.82877 * 180.12546 * 3 2 1 5 5 C 1.50707 * 125.52359 * 179.85868 * 4 3 2 6 6 N 1.46900 * 109.46959 * 269.71679 * 5 4 3 7 7 C 1.46906 * 110.99945 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.38462 * 327.23329 * 7 6 5 9 9 C 1.54385 * 110.34146 * 89.46381 * 7 6 5 10 10 N 1.48144 * 104.61907 * 142.73963 * 9 7 6 11 11 C 1.34775 * 127.83969 * 140.41308 * 10 9 7 12 12 O 1.21275 * 120.00151 * 0.02844 * 11 10 9 13 13 C 1.50702 * 119.99866 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47050 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00029 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99697 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00002 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99773 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99697 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47568 * 60.00512 * 19 17 15 21 21 H 1.48504 * 109.47099 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47368 * 300.00005 * 19 17 15 23 23 C 1.48151 * 104.32233 * 320.41113 * 10 9 7 24 24 C 1.54277 * 110.34155 * 205.00123 * 7 6 5 25 25 H 1.09000 * 110.34806 * 359.97438 * 24 7 6 26 26 C 1.53001 * 110.43227 * 122.21494 * 24 7 6 27 27 N 1.30707 * 108.95063 * 359.59497 * 4 3 2 28 28 N 1.34430 * 125.96059 * 179.67580 * 2 1 3 29 29 H 0.97005 * 126.82683 * 0.07114 * 28 2 1 30 30 H 1.08996 * 109.47064 * 270.32429 * 1 2 3 31 31 H 1.09000 * 109.47457 * 30.32532 * 1 2 3 32 32 H 1.09005 * 109.47165 * 150.32319 * 1 2 3 33 33 H 1.09004 * 109.47138 * 149.71767 * 5 4 3 34 34 H 1.08996 * 109.47298 * 29.71991 * 5 4 3 35 35 H 1.00897 * 110.99865 * 303.95247 * 6 5 4 36 36 H 1.09004 * 110.40869 * 261.52292 * 9 7 6 37 37 H 1.09003 * 110.41159 * 23.83314 * 9 7 6 38 38 H 1.09006 * 109.46686 * 299.99517 * 13 11 10 39 39 H 1.08999 * 109.47428 * 59.99606 * 13 11 10 40 40 H 0.97002 * 119.99695 * 179.97438 * 18 17 15 41 41 H 1.08992 * 110.40889 * 280.80306 * 23 10 9 42 42 H 1.09000 * 110.40506 * 158.36626 * 23 10 9 43 43 H 1.08998 * 109.47241 * 177.04472 * 26 24 7 44 44 H 1.09000 * 109.47086 * 297.04305 * 26 24 7 45 45 H 1.09005 * 109.47126 * 57.04195 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0027 5 6 4.7372 1.6236 -0.0067 6 7 5.1221 1.9204 -1.3929 7 6 6.2743 2.8307 -1.4360 8 1 6.2468 3.5182 -0.5906 9 6 7.5930 2.0279 -1.4322 10 7 8.4927 2.7825 -2.3354 11 6 9.8103 3.0198 -2.1806 12 8 10.3932 2.5925 -1.2067 13 6 10.5594 3.8162 -3.2178 14 16 12.2961 3.9609 -2.7290 15 6 12.9161 4.9083 -4.0791 16 1 12.2526 5.2117 -4.8755 17 6 14.2568 5.2654 -4.1186 18 7 15.0651 4.8960 -3.1478 19 14 14.9138 6.2704 -5.5495 20 1 14.1948 7.5682 -5.6145 21 1 16.3653 6.5173 -5.3559 22 1 14.7038 5.5242 -6.8162 23 6 7.6155 3.2169 -3.4474 24 6 6.2891 3.6147 -2.7646 25 1 5.4417 3.3241 -3.3856 26 6 6.2597 5.1207 -2.4965 27 7 3.6194 -0.6168 0.0042 28 7 2.2964 -1.0881 0.0062 29 1 2.0093 -2.0147 0.0104 30 1 -0.3633 0.0058 1.0276 31 1 -0.3634 0.8870 -0.5189 32 1 -0.3634 -0.8929 -0.5088 33 1 5.5740 1.1534 0.5100 34 1 4.4698 2.5495 0.5024 35 1 5.3126 1.0721 -1.9048 36 1 8.0107 1.9878 -0.4262 37 1 7.4259 1.0206 -1.8138 38 1 10.4944 3.3103 -4.1811 39 1 10.1205 4.8106 -3.2992 40 1 16.0021 5.1452 -3.1756 41 1 7.4523 2.3961 -4.1457 42 1 8.0502 4.0740 -3.9618 43 1 6.3235 5.6594 -3.4420 44 1 5.3296 5.3818 -1.9917 45 1 7.1050 5.3939 -1.8649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281379069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = 54.778094 kcal Electronic energy + Delta-G solvation = -26067.501500 eV Core-core repulsion = 22248.012693 eV Total energy + Delta-G solvation = -3819.488807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54569 -40.03634 -37.89459 -35.60284 -33.26567 -32.77935 -32.41853 -32.24530 -30.14820 -28.86441 -27.83781 -26.52279 -25.69583 -25.30518 -22.81082 -21.80410 -20.96355 -20.11056 -19.33259 -18.34223 -17.69167 -16.62919 -16.52888 -16.12395 -15.82412 -15.11235 -14.85393 -14.79861 -14.77944 -14.16207 -13.87255 -13.76577 -13.60542 -13.52506 -13.22622 -13.19536 -12.94328 -12.69551 -12.47061 -12.31166 -12.26785 -11.86235 -11.74909 -11.23234 -11.07587 -11.02541 -11.01213 -10.91640 -10.75699 -10.51384 -10.41147 -9.94019 -9.81130 -9.41470 -9.04545 -8.88270 -8.48698 -8.22180 -6.48815 -6.19980 -3.90729 1.13691 2.17577 2.39430 2.89830 3.07099 3.24805 3.26779 3.30320 3.47232 3.62129 3.92769 4.17123 4.21877 4.32655 4.41672 4.50633 4.72981 4.79662 4.84375 5.02884 5.08680 5.10470 5.15070 5.15208 5.23902 5.31677 5.44647 5.49946 5.59184 5.62360 5.70176 5.75438 5.80455 5.87822 5.92882 5.97215 5.98908 6.13342 6.17392 6.30981 6.58856 6.67186 6.94977 7.60719 7.69682 7.73556 8.36554 8.57208 9.25062 10.87410 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033334 B = 0.001811 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.779528 B =15461.411490 C =15956.279605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.280 3.720 3 N -0.525 5.525 4 C 0.237 3.763 5 C 0.150 3.850 6 N -0.668 5.668 7 C 0.080 3.920 8 H 0.095 0.905 9 C 0.079 3.921 10 N -0.626 5.626 11 C 0.554 3.446 12 O -0.517 6.517 13 C -0.146 4.146 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.101 3.899 24 C -0.095 4.095 25 H 0.096 0.904 26 C -0.142 4.142 27 N -0.311 5.311 28 N -0.483 5.483 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.346 0.654 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.974 -9.041 3.686 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.254 5.254 4 C -0.046 4.046 5 C 0.019 3.981 6 N -0.300 5.300 7 C -0.031 4.031 8 H 0.114 0.886 9 C -0.047 4.047 10 N -0.363 5.363 11 C 0.343 3.657 12 O -0.391 6.391 13 C -0.296 4.296 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.022 4.022 24 C -0.114 4.114 25 H 0.114 0.886 26 C -0.200 4.200 27 N -0.141 5.141 28 N -0.202 5.202 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.659 -9.156 5.174 32.413 hybrid contribution 0.046 -0.286 -1.837 1.860 sum -30.614 -9.442 3.337 32.210 Atomic orbital electron populations 1.20403 0.83580 1.05115 1.04605 1.24471 0.96723 0.82816 0.95810 1.70382 1.01339 1.29255 1.24412 1.24070 0.93407 0.89690 0.97479 1.20198 0.90221 0.96463 0.91222 1.60603 1.37701 1.19608 1.12062 1.22647 0.86786 0.94369 0.99333 0.88642 1.23010 0.90330 0.94982 0.96339 1.48902 1.07561 1.55529 1.24340 1.20012 0.79253 0.79443 0.86967 1.90708 1.66227 1.51012 1.31175 1.23497 1.04349 1.01578 1.00212 1.85399 0.94520 1.70970 1.32490 1.22823 0.97241 1.39407 1.08926 0.90965 1.24985 0.95744 0.95938 0.96863 1.70008 1.05236 1.43646 1.31387 0.86226 0.77800 0.80067 0.81415 1.19918 1.20810 1.19947 1.22536 0.89652 1.00253 0.89776 1.22114 0.97506 0.95890 0.95926 0.88554 1.21819 1.02086 0.94047 1.02038 1.78033 0.96862 1.12503 1.26736 1.47995 1.04279 1.10101 1.57804 0.71478 0.88964 0.88189 0.89868 0.92194 0.87867 0.83513 0.89872 0.91555 0.89320 0.89228 0.92135 0.91208 0.89714 0.92219 0.92188 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.28 1.97 8.24 -155.70 -1.28 0.69 16 3 N -0.52 -5.39 11.19 -8.16 -0.09 -5.48 16 4 C 0.24 2.46 7.65 -156.86 -1.20 1.26 16 5 C 0.15 1.34 6.16 -4.97 -0.03 1.31 16 6 N -0.67 -5.91 6.21 -106.51 -0.66 -6.57 16 7 C 0.08 0.75 3.04 -66.32 -0.20 0.55 16 8 H 0.10 0.92 7.40 -51.93 -0.38 0.54 16 9 C 0.08 0.95 6.71 -2.41 -0.02 0.93 16 10 N -0.63 -9.18 3.32 -169.30 -0.56 -9.74 16 11 C 0.55 10.94 7.93 -10.99 -0.09 10.86 16 12 O -0.52 -12.27 16.13 5.56 0.09 -12.18 16 13 C -0.15 -3.05 5.13 36.01 0.18 -2.86 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 19 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 C 0.10 1.12 6.46 -2.40 -0.02 1.10 16 24 C -0.09 -0.87 3.44 -89.22 -0.31 -1.18 16 25 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 26 C -0.14 -1.31 8.91 37.16 0.33 -0.98 16 27 N -0.31 -3.20 12.80 32.42 0.41 -2.78 16 28 N -0.48 -3.31 7.45 32.62 0.24 -3.07 16 29 H 0.44 1.40 8.96 -182.33 -1.63 -0.23 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.35 3.06 8.08 -39.29 -0.32 2.74 16 36 H 0.08 1.12 7.88 -51.93 -0.41 0.71 16 37 H 0.07 0.74 7.55 -51.93 -0.39 0.34 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.09 1.73 7.95 -51.92 -0.41 1.32 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.94 7.02 -51.93 -0.36 0.57 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -37.81 391.20 -11.32 -49.13 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.10 Total: -1.02 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.05 Total: -1.19 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.08 Total: -53.25 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.81 -11.32 -49.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.907 kcal (2) G-P(sol) polarization free energy of solvation -37.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds