Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30831 * 125.96405 * 2 1 4 4 C 1.33235 * 109.82877 * 180.12546 * 3 2 1 5 5 C 1.50707 * 125.52359 * 179.85868 * 4 3 2 6 6 N 1.46900 * 109.46959 * 269.71679 * 5 4 3 7 7 C 1.46906 * 110.99945 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.38462 * 327.23329 * 7 6 5 9 9 C 1.54385 * 110.34146 * 89.46381 * 7 6 5 10 10 N 1.48144 * 104.61907 * 142.73963 * 9 7 6 11 11 C 1.34775 * 127.83969 * 140.41308 * 10 9 7 12 12 O 1.21275 * 120.00151 * 0.02844 * 11 10 9 13 13 C 1.50702 * 119.99866 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47050 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00029 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99697 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00002 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99773 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99697 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47568 * 60.00512 * 19 17 15 21 21 H 1.48504 * 109.47099 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47368 * 300.00005 * 19 17 15 23 23 C 1.48151 * 104.32233 * 320.41113 * 10 9 7 24 24 C 1.54277 * 110.34155 * 205.00123 * 7 6 5 25 25 H 1.09000 * 110.34806 * 359.97438 * 24 7 6 26 26 C 1.53001 * 110.43227 * 122.21494 * 24 7 6 27 27 N 1.30707 * 108.95063 * 359.59497 * 4 3 2 28 28 N 1.34430 * 125.96059 * 179.67580 * 2 1 3 29 29 H 0.97005 * 126.82683 * 0.07114 * 28 2 1 30 30 H 1.08996 * 109.47064 * 270.32429 * 1 2 3 31 31 H 1.09000 * 109.47457 * 30.32532 * 1 2 3 32 32 H 1.09005 * 109.47165 * 150.32319 * 1 2 3 33 33 H 1.09004 * 109.47138 * 149.71767 * 5 4 3 34 34 H 1.08996 * 109.47298 * 29.71991 * 5 4 3 35 35 H 1.00897 * 110.99865 * 303.95247 * 6 5 4 36 36 H 1.09004 * 110.40869 * 261.52292 * 9 7 6 37 37 H 1.09003 * 110.41159 * 23.83314 * 9 7 6 38 38 H 1.09006 * 109.46686 * 299.99517 * 13 11 10 39 39 H 1.08999 * 109.47428 * 59.99606 * 13 11 10 40 40 H 0.97002 * 119.99695 * 179.97438 * 18 17 15 41 41 H 1.08992 * 110.40889 * 280.80306 * 23 10 9 42 42 H 1.09000 * 110.40506 * 158.36626 * 23 10 9 43 43 H 1.08998 * 109.47241 * 177.04472 * 26 24 7 44 44 H 1.09000 * 109.47086 * 297.04305 * 26 24 7 45 45 H 1.09005 * 109.47126 * 57.04195 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0027 5 6 4.7372 1.6236 -0.0067 6 7 5.1221 1.9204 -1.3929 7 6 6.2743 2.8307 -1.4360 8 1 6.2468 3.5182 -0.5906 9 6 7.5930 2.0279 -1.4322 10 7 8.4927 2.7825 -2.3354 11 6 9.8103 3.0198 -2.1806 12 8 10.3932 2.5925 -1.2067 13 6 10.5594 3.8162 -3.2178 14 16 12.2961 3.9609 -2.7290 15 6 12.9161 4.9083 -4.0791 16 1 12.2526 5.2117 -4.8755 17 6 14.2568 5.2654 -4.1186 18 7 15.0651 4.8960 -3.1478 19 14 14.9138 6.2704 -5.5495 20 1 14.1948 7.5682 -5.6145 21 1 16.3653 6.5173 -5.3559 22 1 14.7038 5.5242 -6.8162 23 6 7.6155 3.2169 -3.4474 24 6 6.2891 3.6147 -2.7646 25 1 5.4417 3.3241 -3.3856 26 6 6.2597 5.1207 -2.4965 27 7 3.6194 -0.6168 0.0042 28 7 2.2964 -1.0881 0.0062 29 1 2.0093 -2.0147 0.0104 30 1 -0.3633 0.0058 1.0276 31 1 -0.3634 0.8870 -0.5189 32 1 -0.3634 -0.8929 -0.5088 33 1 5.5740 1.1534 0.5100 34 1 4.4698 2.5495 0.5024 35 1 5.3126 1.0721 -1.9048 36 1 8.0107 1.9878 -0.4262 37 1 7.4259 1.0206 -1.8138 38 1 10.4944 3.3103 -4.1811 39 1 10.1205 4.8106 -3.2992 40 1 16.0021 5.1452 -3.1756 41 1 7.4523 2.3961 -4.1457 42 1 8.0502 4.0740 -3.9618 43 1 6.3235 5.6594 -3.4420 44 1 5.3296 5.3818 -1.9917 45 1 7.1050 5.3939 -1.8649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281379069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = 26.882461 kcal Electronic energy + Delta-G solvation = -26068.711145 eV Core-core repulsion = 22248.012693 eV Total energy + Delta-G solvation = -3820.698453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.15144 -41.20318 -39.19551 -36.47160 -34.59075 -34.02911 -33.35198 -33.13472 -31.48785 -29.61893 -28.63323 -27.68408 -27.41473 -26.43726 -23.74445 -22.36355 -21.64728 -21.00885 -20.70696 -19.57860 -18.90731 -18.08796 -17.44201 -17.05216 -16.88160 -16.74272 -16.16412 -15.97677 -15.73150 -15.58526 -15.01012 -14.65863 -14.42733 -14.31950 -14.23870 -14.07164 -13.72710 -13.61108 -13.58370 -13.33493 -13.18108 -13.01660 -12.86258 -12.80359 -12.74969 -12.62796 -12.00311 -11.90740 -11.75871 -11.72771 -11.14726 -11.12973 -11.07296 -10.98061 -10.54868 -10.29554 -9.90583 -9.48190 -8.68744 -8.34577 -6.13696 0.54819 1.22038 1.43938 1.44390 1.53437 1.54693 1.69352 1.76389 2.04487 2.27279 2.90579 2.99500 3.18345 3.28986 3.50833 3.54452 3.66811 3.86731 3.90575 3.97799 4.21509 4.23377 4.24862 4.38008 4.43543 4.49427 4.55408 4.69841 4.72382 4.75653 4.77752 4.85269 4.90143 5.05174 5.07918 5.16724 5.22786 5.30404 5.33920 5.41211 5.43739 5.88219 6.17156 6.19403 6.23657 6.40287 7.06198 7.08140 7.08725 8.74502 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033334 B = 0.001811 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.779528 B =15461.411490 C =15956.279605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.561 5.561 4 C 0.226 3.774 5 C 0.152 3.848 6 N -0.659 5.659 7 C 0.093 3.907 8 H 0.095 0.905 9 C 0.077 3.923 10 N -0.618 5.618 11 C 0.552 3.448 12 O -0.570 6.570 13 C -0.119 4.119 14 S -0.151 6.151 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.262 1.262 23 C 0.094 3.906 24 C -0.083 4.083 25 H 0.114 0.886 26 C -0.141 4.141 27 N -0.342 5.342 28 N -0.475 5.475 29 H 0.455 0.545 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.347 0.653 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.983 -8.794 1.673 36.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.291 5.291 4 C -0.058 4.058 5 C 0.021 3.979 6 N -0.291 5.291 7 C -0.018 4.018 8 H 0.113 0.887 9 C -0.048 4.048 10 N -0.353 5.353 11 C 0.341 3.659 12 O -0.448 6.448 13 C -0.270 4.270 14 S 0.076 5.924 15 C -0.695 4.695 16 H 0.102 0.898 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.821 3.179 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.028 4.028 24 C -0.103 4.103 25 H 0.132 0.868 26 C -0.198 4.198 27 N -0.173 5.173 28 N -0.195 5.195 29 H 0.303 0.697 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.167 0.833 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -33.759 -8.939 3.139 35.063 hybrid contribution 0.756 -0.466 -1.170 1.468 sum -33.003 -9.405 1.970 34.373 Atomic orbital electron populations 1.20639 0.80237 1.06524 1.06003 1.25278 0.98284 0.82030 0.93647 1.70372 1.01603 1.30981 1.26162 1.24207 0.93881 0.89887 0.97794 1.20187 0.90077 0.96491 0.91164 1.60628 1.36685 1.19652 1.12109 1.22513 0.85488 0.94065 0.99746 0.88675 1.23231 0.90734 0.95887 0.94946 1.48805 1.06344 1.54361 1.25750 1.19747 0.80793 0.79330 0.86040 1.90686 1.67870 1.53303 1.32973 1.23286 0.99443 1.03169 1.01073 1.85592 1.00904 1.71542 1.34322 1.23166 0.97967 1.39423 1.08956 0.89844 1.26139 0.95934 0.97019 0.99978 1.70179 1.05644 1.45125 1.33799 0.84994 0.77072 0.78459 0.77407 1.18554 1.20365 1.18625 1.22889 0.89541 1.01248 0.89077 1.22074 0.96927 0.95802 0.95497 0.86756 1.21809 1.01714 0.93999 1.02280 1.77935 0.98917 1.12671 1.27761 1.47941 1.03275 1.11064 1.57264 0.69682 0.87373 0.88156 0.87046 0.92317 0.87634 0.83296 0.91778 0.90185 0.87591 0.87440 0.91971 0.89066 0.89376 0.91224 0.91273 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 10.51 71.23 0.75 0.60 16 2 C 0.29 3.54 8.24 138.23 1.14 4.68 16 3 N -0.56 -10.97 11.19 -179.73 -2.01 -12.98 16 4 C 0.23 4.55 7.65 138.64 1.06 5.61 16 5 C 0.15 2.64 6.16 85.56 0.53 3.17 16 6 N -0.66 -10.67 6.21 -490.89 -3.05 -13.72 16 7 C 0.09 1.63 3.04 45.82 0.14 1.77 16 8 H 0.10 1.73 7.40 -2.39 -0.02 1.72 16 9 C 0.08 1.80 6.71 86.53 0.58 2.38 16 10 N -0.62 -17.59 3.32 -807.95 -2.68 -20.27 16 11 C 0.55 22.04 7.93 87.66 0.70 22.74 16 12 O -0.57 -28.16 16.13 -3.02 -0.05 -28.21 16 13 C -0.12 -4.94 5.13 71.24 0.37 -4.58 16 14 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 15 C -0.55 -31.67 9.50 67.96 0.65 -31.02 16 16 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 17 C 0.01 0.81 5.49 84.86 0.47 1.28 16 18 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 19 Si 1.00 43.85 29.55 68.60 2.03 45.87 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 C 0.09 1.85 6.46 86.54 0.56 2.40 16 24 C -0.08 -1.32 3.44 -9.89 -0.03 -1.36 16 25 H 0.11 1.53 7.95 -2.39 -0.02 1.51 16 26 C -0.14 -2.28 8.91 71.98 0.64 -1.64 16 27 N -0.34 -6.81 12.80 -51.33 -0.66 -7.46 16 28 N -0.48 -5.85 7.45 -50.71 -0.38 -6.23 16 29 H 0.45 2.13 8.96 -213.09 -1.91 0.22 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.11 -0.40 8.14 -2.38 -0.02 -0.42 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 35 H 0.35 5.57 8.08 -89.70 -0.72 4.84 16 36 H 0.06 1.77 7.88 -2.39 -0.02 1.75 16 37 H 0.08 1.69 7.55 -2.39 -0.02 1.67 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.11 4.06 7.95 -2.40 -0.02 4.04 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.71 7.02 -2.39 -0.02 1.69 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -85.33 391.20 -1.75 -87.08 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -1.61 Total: 15.92 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 7.53 Total: 6.02 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -8.49 Total: -116.93 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -85.33 -1.75 -87.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.960 kcal (2) G-P(sol) polarization free energy of solvation -85.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds