Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21585 * 120.00283 * 180.02562 * 6 5 4 8 8 C 1.47622 * 119.99811 * 0.02967 * 6 5 4 9 9 N 1.31869 * 126.45959 * 0.02562 * 8 6 5 10 10 N 1.28467 * 110.15365 * 180.02562 * 9 8 6 11 11 H 0.97001 * 124.92859 * 179.97438 * 10 9 8 12 12 C 1.35726 * 110.13158 * 0.02562 * 10 9 8 13 13 C 1.35543 * 107.12236 * 359.72803 * 12 10 9 14 14 F 1.35093 * 127.24406 * 180.29578 * 13 12 10 15 15 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 5 4 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 5 18 18 N 1.46906 * 111.00138 * 204.91985 * 16 15 5 19 19 C 1.46904 * 110.99383 * 273.54550 * 18 16 15 20 20 C 1.50709 * 109.46565 * 180.02562 * 19 18 16 21 21 O 1.21289 * 119.99971 * 359.97438 * 20 19 18 22 22 N 1.34778 * 119.99787 * 180.02562 * 20 19 18 23 23 C 1.37093 * 119.99695 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00208 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99933 * 179.97438 * 23 22 20 26 26 N 1.31421 * 119.99923 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00335 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46735 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46982 * 119.99804 * 27 25 23 30 30 H 1.48495 * 109.47412 * 240.00431 * 27 25 23 31 31 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 32 32 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 33 33 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 34 34 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 35 35 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 36 36 H 1.08003 * 126.43482 * 179.97438 * 12 10 9 37 37 H 1.08999 * 110.36956 * 142.96999 * 15 5 4 38 38 H 1.09003 * 110.36599 * 265.28903 * 15 5 4 39 39 H 1.00894 * 111.00184 * 37.50009 * 18 16 15 40 40 H 1.08990 * 109.47445 * 299.99831 * 19 18 16 41 41 H 1.09000 * 109.47295 * 60.00909 * 19 18 16 42 42 H 0.96996 * 119.99820 * 0.02562 * 22 20 19 43 43 H 0.97001 * 119.99662 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9354 -2.9694 -1.0009 8 6 3.6521 -2.5976 -2.9159 9 7 2.6590 -2.0364 -3.5774 10 7 2.6554 -2.4401 -4.7970 11 1 2.0165 -2.1626 -5.4721 12 6 3.6749 -3.3121 -5.0034 13 6 4.3387 -3.4353 -3.8281 14 9 5.4253 -4.1982 -3.5789 15 6 3.4656 -1.2541 0.6849 16 6 2.0831 -0.7972 1.2139 17 1 1.4480 -1.6542 1.4382 18 7 2.2298 0.0691 2.3912 19 6 2.3155 -0.7267 3.6229 20 6 2.4644 0.1942 4.8066 21 8 2.4965 1.3952 4.6403 22 7 2.5629 -0.3169 6.0498 23 6 2.6989 0.5209 7.1265 24 1 2.7266 1.5903 6.9785 25 6 2.7999 -0.0059 8.4082 26 7 2.7656 -1.3073 8.5884 27 14 2.9844 1.1355 9.8754 28 1 2.9950 2.5449 9.4077 29 1 1.8461 0.9321 10.8070 30 1 4.2583 0.8370 10.5777 31 1 -0.3633 -1.0272 0.0321 32 1 -0.3634 0.5414 0.8735 33 1 -0.3633 0.4858 -0.9056 34 1 2.3741 -0.1026 -1.9977 35 1 1.3121 -1.4741 -1.5791 36 1 3.9146 -3.8107 -5.9309 37 1 3.7975 -2.1479 1.2131 38 1 4.1973 -0.4537 0.7952 39 1 3.0304 0.6758 2.2962 40 1 1.4080 -1.3197 3.7363 41 1 3.1786 -1.3902 3.5676 42 1 2.5384 -1.2774 6.1827 43 1 2.8366 -1.6750 9.4832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316596730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = -27.189810 kcal Electronic energy + Delta-G solvation = -28721.207648 eV Core-core repulsion = 24331.951270 eV Total energy + Delta-G solvation = -4389.256378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.98731 -43.16372 -40.19503 -38.44142 -37.75726 -34.76270 -33.80076 -32.70046 -32.23078 -31.20220 -31.07583 -29.01581 -26.62249 -26.35050 -24.65067 -23.71947 -22.38226 -21.91826 -20.57983 -19.97720 -19.25170 -18.88041 -17.88097 -17.39625 -16.95060 -16.45926 -16.32814 -16.04268 -15.47548 -15.43328 -15.20390 -14.87477 -14.55629 -14.45008 -14.19674 -13.78436 -13.57629 -13.32626 -13.10253 -13.06436 -12.95734 -12.31609 -12.24377 -12.11997 -11.66286 -11.56776 -11.48937 -11.22391 -11.04536 -10.98601 -10.70694 -10.35031 -10.32834 -10.20788 -10.09885 -9.50658 -9.46145 -8.84563 -8.46769 -8.09884 -7.94721 -6.40137 -3.80962 0.97386 1.33679 2.10087 2.62328 2.99337 3.17915 3.28476 3.35669 3.61998 3.91750 4.04309 4.08356 4.26404 4.30517 4.33909 4.48246 4.65494 4.83427 4.86477 5.09280 5.14388 5.19472 5.27829 5.42746 5.47561 5.63956 5.66748 5.74956 5.79255 5.82826 5.89456 5.98216 6.03253 6.14736 6.24244 6.25151 6.30248 7.05803 7.15583 7.24972 7.57045 7.57892 7.88802 8.07758 8.62375 9.19356 9.55730 10.06731 10.77590 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.002016 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.883814 B =13888.191203 C =14769.134191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.600 5.600 6 C 0.612 3.388 7 O -0.523 6.523 8 C -0.024 4.024 9 N -0.227 5.227 10 N -0.370 5.370 11 H 0.457 0.543 12 C -0.037 4.037 13 C 0.038 3.962 14 F -0.099 7.099 15 C 0.074 3.926 16 C 0.081 3.919 17 H 0.096 0.904 18 N -0.649 5.649 19 C 0.047 3.953 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.563 5.563 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.199 0.801 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.353 0.647 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 -5.079 -29.984 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.109 0.891 4 C -0.011 4.011 5 N -0.334 5.334 6 C 0.397 3.603 7 O -0.397 6.397 8 C -0.186 4.186 9 N -0.064 5.064 10 N -0.087 5.087 11 H 0.303 0.697 12 C -0.182 4.182 13 C 0.008 3.992 14 F -0.077 7.077 15 C -0.050 4.050 16 C -0.031 4.031 17 H 0.114 0.886 18 N -0.280 5.280 19 C -0.085 4.085 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.216 0.784 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.226 0.774 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.341 -3.911 -29.418 29.993 hybrid contribution 1.531 -1.134 0.228 1.919 sum -2.811 -5.045 -29.190 29.756 Atomic orbital electron populations 1.21660 0.93247 1.01905 1.02397 1.22284 0.96959 0.99719 0.92371 0.89067 1.22264 0.87171 0.94732 0.96979 1.48104 1.30297 1.43615 1.11366 1.16342 0.82104 0.79140 0.82666 1.90879 1.28318 1.48532 1.71951 1.22097 0.97316 1.02849 0.96307 1.73782 1.20066 1.20327 0.92226 1.43094 1.24264 1.32355 1.08966 0.69672 1.22693 0.93752 1.01052 1.00717 1.17179 0.90217 0.98681 0.93086 1.91555 1.49542 1.72392 1.94240 1.23257 0.99483 1.01891 0.80365 1.22971 0.93949 0.95559 0.90603 0.88608 1.60157 1.48937 1.19534 0.99385 1.21754 1.01441 0.95345 0.89974 1.19769 0.84521 0.89069 0.84004 1.90525 1.55753 1.15335 1.85172 1.41869 1.63628 1.09678 1.04805 1.19749 1.46750 0.92105 0.84195 0.87844 1.25277 0.97390 0.96328 0.99039 1.69627 1.50444 1.10662 1.23502 0.85796 0.77728 0.80186 0.80609 1.19214 1.20767 1.20777 0.92827 0.90993 0.92725 0.90917 0.90616 0.78401 0.89954 0.90807 0.82676 0.89389 0.93525 0.77428 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.14 37.15 0.34 -0.88 16 2 C -0.09 -0.94 3.26 -88.65 -0.29 -1.23 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.11 1.06 5.13 -3.07 -0.02 1.05 16 5 N -0.60 -7.32 3.33 -171.71 -0.57 -7.89 16 6 C 0.61 8.60 7.85 -12.43 -0.10 8.50 16 7 O -0.52 -9.22 16.93 5.29 0.09 -9.13 16 8 C -0.02 -0.27 6.98 -82.74 -0.58 -0.85 16 9 N -0.23 -1.85 9.74 33.43 0.33 -1.52 16 10 N -0.37 -1.57 6.86 30.64 0.21 -1.36 16 11 H 0.46 -0.06 8.96 -190.44 -1.71 -1.77 16 12 C -0.04 -0.19 12.06 -16.79 -0.20 -0.39 16 13 C 0.04 0.38 8.03 -39.26 -0.32 0.07 16 14 F -0.10 -1.21 17.03 2.25 0.04 -1.17 16 15 C 0.07 0.93 6.49 -2.53 -0.02 0.92 16 16 C 0.08 0.97 2.77 -65.42 -0.18 0.79 16 17 H 0.10 1.12 7.82 -51.93 -0.41 0.72 16 18 N -0.65 -9.87 6.00 -105.57 -0.63 -10.50 16 19 C 0.05 0.81 6.04 -4.97 -0.03 0.78 16 20 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 21 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 22 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 23 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 24 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 25 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 26 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 27 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 31 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.65 7.77 -51.93 -0.40 0.25 16 35 H 0.08 0.67 7.32 -51.93 -0.38 0.29 16 36 H 0.20 0.16 8.06 -52.48 -0.42 -0.26 16 37 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 38 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 39 H 0.35 5.59 8.00 -39.30 -0.31 5.28 16 40 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -36.05 371.55 -7.75 -43.80 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.82 Total: 8.93 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -1.71 Total: 10.97 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.00 Total: -59.58 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.18 Total: -24.71 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.05 -7.75 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316596730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.611 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds