Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00151 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99845 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47203 * 90.00024 * 14 12 10 16 16 H 1.48506 * 109.46989 * 210.00023 * 14 12 10 17 17 H 1.48506 * 109.47313 * 329.99924 * 14 12 10 18 18 N 1.46905 * 109.46799 * 240.00580 * 2 1 3 19 19 C 1.46898 * 111.00329 * 85.00053 * 18 2 1 20 20 C 1.53000 * 109.47174 * 179.97438 * 19 18 2 21 21 H 1.09006 * 110.21071 * 53.07927 * 20 19 18 22 22 C 1.54432 * 110.24152 * 174.99700 * 20 19 18 23 23 C 1.54574 * 101.66707 * 93.51598 * 22 20 19 24 24 C 1.51484 * 104.21717 * 24.96419 * 23 22 20 25 25 N 1.31159 * 141.93860 * 163.56261 * 24 23 22 26 26 C 1.33167 * 109.83640 * 180.15056 * 25 24 23 27 27 N 1.30648 * 108.94625 * 359.91341 * 26 25 24 28 28 N 1.34116 * 110.04677 * 343.52681 * 24 23 22 29 29 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 31 31 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 36 36 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 37 37 H 0.96999 * 120.00126 * 180.02562 * 13 12 10 38 38 H 1.00900 * 110.99586 * 208.95683 * 18 2 1 39 39 H 1.09003 * 109.46664 * 299.99985 * 19 18 2 40 40 H 1.09002 * 109.47064 * 59.99547 * 19 18 2 41 41 H 1.09000 * 110.99006 * 211.61288 * 22 20 19 42 42 H 1.09005 * 110.98751 * 335.42119 * 22 20 19 43 43 H 1.09000 * 110.48023 * 143.64414 * 23 22 20 44 44 H 1.08993 * 110.48397 * 266.28365 * 23 22 20 45 45 H 1.08001 * 125.52589 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1909 7 8 3.5700 -1.8834 3.1397 8 6 5.6749 -1.5371 2.1302 9 16 6.2783 -2.3903 3.6081 10 6 8.0101 -2.3774 3.2832 11 1 8.3863 -1.9249 2.3776 12 6 8.8907 -2.9497 4.1907 13 7 8.4321 -3.5025 5.2938 14 14 10.7266 -2.9367 3.8459 15 1 11.3287 -1.7051 4.4168 16 1 11.3555 -4.1295 4.4680 17 1 10.9550 -2.9651 2.3788 18 7 2.0195 -0.6924 -1.1996 19 6 2.0823 0.2227 -2.3470 20 6 2.5960 -0.5327 -3.5743 21 1 1.9996 -1.4297 -3.7413 22 6 2.5509 0.3787 -4.8202 23 6 3.9798 0.9681 -4.8283 24 6 4.8103 -0.0595 -4.0873 25 7 6.0516 -0.4290 -3.8799 26 6 6.0791 -1.4859 -3.0702 27 7 4.8539 -1.8051 -2.7475 28 7 4.0106 -0.8865 -3.3980 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.9824 -0.4622 0.4317 35 1 5.9629 -2.1007 1.2428 36 1 6.1099 -0.5387 2.0836 37 1 9.0476 -3.9022 5.9281 38 1 2.9171 -1.1205 -1.0289 39 1 1.0869 0.6165 -2.5525 40 1 2.7587 1.0463 -2.1182 41 1 2.3633 -0.2029 -5.7228 42 1 1.8050 1.1647 -4.7021 43 1 4.3390 1.0833 -5.8509 44 1 4.0009 1.9243 -4.3056 45 1 6.9697 -1.9958 -2.7339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317225764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = 41.715690 kcal Electronic energy + Delta-G solvation = -27019.978065 eV Core-core repulsion = 23199.922829 eV Total energy + Delta-G solvation = -3820.055235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.46738 -40.87804 -39.12770 -37.76324 -35.07774 -34.61597 -33.17534 -32.30796 -30.91165 -30.59315 -28.97432 -27.77757 -26.88181 -24.98233 -23.60227 -21.96701 -21.93137 -21.47373 -21.34962 -19.90120 -18.21632 -17.70933 -17.39189 -17.31251 -16.95261 -16.90698 -16.35203 -16.10451 -15.94870 -15.84283 -15.40393 -15.02381 -14.79772 -14.58605 -14.29730 -14.20456 -13.71449 -13.51956 -13.38725 -13.28071 -13.20632 -12.96881 -12.90872 -12.80203 -12.62925 -12.54247 -12.18797 -12.16636 -11.86498 -11.74405 -11.17226 -11.08870 -10.99803 -10.77550 -10.42173 -10.34652 -10.29099 -9.58257 -8.71438 -8.37796 -6.16647 0.62128 1.20935 1.21287 1.40378 1.42419 1.47935 1.54538 1.90653 2.13348 2.24060 2.63936 2.92562 2.96318 3.25786 3.44222 3.57082 3.66061 3.67852 3.84112 3.99104 4.07064 4.17135 4.18106 4.26414 4.33144 4.39444 4.40206 4.52310 4.54277 4.67484 4.74799 4.85360 4.90665 4.98453 5.00809 5.07174 5.22328 5.37916 5.38450 5.40599 5.50427 5.69683 5.91567 6.10115 6.16624 6.23630 7.03248 7.06133 7.13873 8.71639 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.003033 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.213452 B = 9229.579930 C =11494.353051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 H 0.063 0.937 4 C 0.114 3.886 5 N -0.717 5.717 6 C 0.536 3.464 7 O -0.558 6.558 8 C -0.129 4.129 9 S -0.142 6.142 10 C -0.548 4.548 11 H 0.080 0.920 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.259 1.259 18 N -0.699 5.699 19 C 0.050 3.950 20 C 0.141 3.859 21 H 0.107 0.893 22 C -0.105 4.105 23 C -0.047 4.047 24 C 0.242 3.758 25 N -0.569 5.569 26 C 0.190 3.810 27 N -0.329 5.329 28 N -0.397 5.397 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.272 0.728 38 H 0.337 0.663 39 H 0.132 0.868 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.242 14.928 -26.661 35.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.081 0.919 4 C -0.010 4.010 5 N -0.371 5.371 6 C 0.322 3.678 7 O -0.436 6.436 8 C -0.280 4.280 9 S 0.085 5.915 10 C -0.696 4.696 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.183 1.183 18 N -0.332 5.332 19 C -0.079 4.079 20 C 0.040 3.960 21 H 0.125 0.875 22 C -0.144 4.144 23 C -0.087 4.087 24 C -0.035 4.035 25 N -0.299 5.299 26 C -0.112 4.112 27 N -0.156 5.156 28 N -0.188 5.188 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.238 0.762 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.167 0.833 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -18.890 13.252 -24.643 33.760 hybrid contribution 3.073 0.465 -0.627 3.170 sum -15.817 13.717 -25.270 32.816 Atomic orbital electron populations 1.21713 0.91329 1.02796 1.03156 1.21766 0.98091 0.95709 0.86939 0.91896 1.21725 0.78534 1.01442 0.99261 1.45797 1.08212 1.60047 1.23015 1.20022 0.88902 0.76835 0.82025 1.90688 1.70370 1.48070 1.34463 1.23339 0.94756 1.05484 1.04413 1.85507 1.05918 1.75020 1.25047 1.23185 0.91602 1.44633 1.10191 0.90155 1.26127 1.05274 0.93632 0.93961 1.70176 1.37467 1.36417 1.10633 0.84956 0.75698 0.78251 0.79099 1.19142 1.20065 1.18281 1.60624 1.33987 1.33464 1.05164 1.22616 1.03335 0.93068 0.88907 1.22589 0.75240 1.00635 0.97561 0.87544 1.23009 0.96634 0.99537 0.95257 1.21200 0.91037 0.94582 1.01831 1.26268 0.87417 0.94999 0.94789 1.70085 1.21071 1.16459 1.22252 1.26509 0.96262 0.93640 0.94818 1.78050 1.01835 1.14251 1.21446 1.51954 1.09468 1.22171 1.35200 0.92552 0.91333 0.89986 0.92179 0.90849 0.76214 0.87984 0.87739 0.91883 0.84357 0.85009 0.94219 0.87395 0.83302 0.85914 0.85757 0.75326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.41 71.98 0.68 -0.80 16 2 C 0.08 1.29 2.81 44.91 0.13 1.42 16 3 H 0.06 0.83 7.80 -2.39 -0.02 0.81 16 4 C 0.11 2.74 5.31 86.38 0.46 3.20 16 5 N -0.72 -20.65 4.99 -463.06 -2.31 -22.96 16 6 C 0.54 21.53 7.85 87.66 0.69 22.21 16 7 O -0.56 -27.21 15.86 -3.03 -0.05 -27.26 16 8 C -0.13 -5.55 6.16 71.24 0.44 -5.12 16 9 S -0.14 -8.20 20.57 -56.49 -1.16 -9.37 16 10 C -0.55 -32.40 9.50 67.95 0.65 -31.75 16 11 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 12 C 0.01 0.87 5.49 84.86 0.47 1.34 16 13 N -0.91 -57.06 13.22 21.65 0.29 -56.78 16 14 Si 1.00 44.77 29.55 68.60 2.03 46.79 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 18 N -0.70 -11.20 6.30 -491.57 -3.10 -14.30 16 19 C 0.05 0.42 5.08 86.30 0.44 0.86 16 20 C 0.14 1.31 3.73 45.41 0.17 1.48 16 21 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 22 C -0.11 -0.01 6.70 31.62 0.21 0.21 16 23 C -0.05 -0.23 6.86 30.63 0.21 -0.02 16 24 C 0.24 4.35 8.66 138.48 1.20 5.55 16 25 N -0.57 -14.31 11.20 -191.09 -2.14 -16.45 16 26 C 0.19 4.92 13.03 180.81 2.36 7.27 16 27 N -0.33 -8.73 12.51 -61.32 -0.77 -9.50 16 28 N -0.40 -7.45 4.18 -314.11 -1.31 -8.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.55 7.45 -2.39 -0.02 0.53 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.40 10.03 7.37 -92.71 -0.68 9.35 16 35 H 0.10 4.15 8.14 -2.40 -0.02 4.13 16 36 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.34 7.39 6.10 -89.69 -0.55 6.84 16 39 H 0.13 0.26 7.39 -2.39 -0.02 0.25 16 40 H 0.04 0.36 8.06 -2.39 -0.02 0.34 16 41 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.15 -1.06 7.86 -2.38 -0.02 -1.08 16 43 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.23 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -88.39 387.90 -0.65 -89.04 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.21 Total: 23.68 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 8.08 Total: 5.86 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -9.34 Total: -128.75 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -88.39 -0.65 -89.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317225764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.755 kcal (2) G-P(sol) polarization free energy of solvation -88.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds