Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30831 * 125.96123 * 2 1 4 4 C 1.33236 * 109.82603 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.52578 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47294 * 14.99869 * 5 4 3 7 7 C 1.53002 * 109.47093 * 255.00159 * 5 4 3 8 8 N 1.46905 * 109.47206 * 135.00150 * 5 4 3 9 9 C 1.46901 * 110.99870 * 205.00135 * 8 5 4 10 10 H 1.08999 * 110.64443 * 36.68189 * 9 8 5 11 11 C 1.55156 * 110.71821 * 160.02334 * 9 8 5 12 12 C 1.54914 * 101.57967 * 153.86308 * 11 9 8 13 13 N 1.47430 * 104.83256 * 322.98986 * 12 11 9 14 14 C 1.34777 * 125.64593 * 204.16466 * 13 12 11 15 15 O 1.21279 * 119.99786 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00083 * 359.95743 * 14 13 12 17 17 S 1.81002 * 109.47096 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00119 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99785 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00164 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00245 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99641 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47238 * 90.00377 * 22 20 18 24 24 H 1.48498 * 109.47036 * 210.00045 * 22 20 18 25 25 H 1.48502 * 109.47348 * 329.99912 * 22 20 18 26 26 C 1.47024 * 108.70132 * 24.12882 * 13 12 11 27 27 N 1.30714 * 108.95148 * 0.26415 * 4 3 2 28 28 N 1.34427 * 125.95639 * 180.02562 * 2 1 3 29 29 H 0.96999 * 126.82845 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47089 * 89.99205 * 1 2 3 31 31 H 1.08998 * 109.47251 * 209.99556 * 1 2 3 32 32 H 1.09004 * 109.47029 * 330.00125 * 1 2 3 33 33 H 1.09003 * 109.46813 * 300.00004 * 7 5 4 34 34 H 1.08999 * 109.47105 * 60.00118 * 7 5 4 35 35 H 1.08996 * 109.46950 * 179.97438 * 7 5 4 36 36 H 1.00901 * 110.99869 * 81.04847 * 8 5 4 37 37 H 1.08998 * 111.00396 * 271.93169 * 11 9 8 38 38 H 1.08995 * 111.00808 * 35.79146 * 11 9 8 39 39 H 1.08999 * 110.36950 * 204.15014 * 12 11 9 40 40 H 1.08998 * 110.45977 * 81.87473 * 12 11 9 41 41 H 1.08998 * 109.47293 * 300.00178 * 16 14 13 42 42 H 1.08995 * 109.47387 * 60.00233 * 16 14 13 43 43 H 0.96995 * 120.00012 * 179.97438 * 21 20 18 44 44 H 1.08992 * 109.87883 * 239.52183 * 26 13 12 45 45 H 1.08995 * 110.01000 * 118.43053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 1 4.4066 2.6273 0.2665 7 6 5.3685 1.6480 -1.3937 8 7 5.7291 1.1584 0.9786 9 6 6.5677 2.2699 1.4470 10 1 5.9799 3.1833 1.5372 11 6 7.2473 1.9142 2.7957 12 6 8.5117 2.8083 2.7521 13 7 8.9349 2.7948 1.3400 14 6 10.1846 3.0278 0.8923 15 8 10.4196 2.9902 -0.2969 16 6 11.2899 3.3354 1.8694 17 16 12.8368 3.5989 0.9672 18 6 13.9240 3.9290 2.3138 19 1 13.5474 3.9225 3.3260 20 6 15.2645 4.1975 2.0738 21 7 16.0766 4.4447 3.0797 22 14 15.9159 4.2081 0.3231 23 1 15.7971 5.5766 -0.2410 24 1 17.3422 3.7949 0.3232 25 1 15.1263 3.2612 -0.5047 26 6 7.7681 2.4844 0.5011 27 7 3.6194 -0.6169 -0.0066 28 7 2.2964 -1.0881 -0.0005 29 1 2.0093 -2.0147 -0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.6992 0.6442 -1.6604 34 1 4.6326 1.9932 -2.1199 35 1 6.2232 2.3245 -1.3935 36 1 6.2943 0.4155 0.5955 37 1 6.6086 2.1817 3.6375 38 1 7.5163 0.8586 2.8313 39 1 9.2936 2.3908 3.3865 40 1 8.2712 3.8238 3.0664 41 1 11.0390 4.2358 2.4302 42 1 11.4087 2.4994 2.5586 43 1 17.0134 4.6319 2.9120 44 1 7.9550 1.5766 -0.0724 45 1 7.5635 3.3144 -0.1751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317296356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = 53.883876 kcal Electronic energy + Delta-G solvation = -26153.594871 eV Core-core repulsion = 22334.067288 eV Total energy + Delta-G solvation = -3819.527583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51783 -40.06211 -38.11186 -36.16514 -33.29060 -32.75201 -32.43094 -31.55693 -29.74733 -29.47487 -28.36549 -27.26369 -25.59708 -24.40854 -23.30114 -21.58482 -21.17802 -20.37690 -19.44149 -18.31953 -17.72272 -16.77339 -16.63559 -16.15378 -15.68124 -15.35218 -15.13630 -14.92366 -14.55442 -14.31666 -14.01524 -13.84174 -13.63217 -13.49728 -13.38443 -13.07697 -12.90783 -12.79193 -12.54825 -12.31796 -12.21206 -11.89819 -11.80591 -11.75509 -11.60643 -11.25471 -11.03200 -10.99712 -10.59702 -10.45133 -10.39334 -9.85760 -9.82965 -9.54772 -8.99379 -8.91536 -8.57055 -8.48579 -6.91132 -6.27952 -3.99716 1.21779 2.23956 2.46064 2.68995 2.95284 3.17248 3.33926 3.37054 3.51643 3.61356 3.88729 4.16555 4.26587 4.34181 4.37269 4.42089 4.63844 4.72002 4.80060 4.82377 4.86784 5.04651 5.05556 5.11027 5.11796 5.20477 5.22552 5.28530 5.38544 5.52481 5.57309 5.62018 5.74429 5.76530 5.78701 5.86962 5.93051 6.02785 6.06129 6.32823 6.56146 6.66387 6.94092 7.57388 7.73841 7.95105 8.42541 8.44194 9.18292 10.81250 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.037320 B = 0.001815 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.086040 B =15427.018027 C =15832.192237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.280 3.720 3 N -0.538 5.538 4 C 0.246 3.754 5 C 0.177 3.823 6 H 0.108 0.892 7 C -0.183 4.183 8 N -0.666 5.666 9 C 0.079 3.921 10 H 0.099 0.901 11 C -0.119 4.119 12 C 0.097 3.903 13 N -0.622 5.622 14 C 0.546 3.454 15 O -0.519 6.519 16 C -0.117 4.117 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.082 3.918 27 N -0.299 5.299 28 N -0.486 5.486 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.354 0.646 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.759 -9.673 -3.396 35.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.001 3.999 3 N -0.268 5.268 4 C -0.037 4.037 5 C 0.064 3.936 6 H 0.126 0.874 7 C -0.243 4.243 8 N -0.297 5.297 9 C -0.032 4.032 10 H 0.117 0.883 11 C -0.157 4.157 12 C -0.026 4.026 13 N -0.360 5.360 14 C 0.335 3.665 15 O -0.393 6.393 16 C -0.268 4.268 17 S 0.083 5.917 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.044 4.044 27 N -0.128 5.128 28 N -0.204 5.204 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.174 0.826 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -32.990 -9.662 -4.592 34.682 hybrid contribution 0.403 -0.449 0.084 0.609 sum -32.588 -10.111 -4.508 34.417 Atomic orbital electron populations 1.20394 0.83680 1.05056 1.04543 1.24374 0.96592 0.82917 0.95972 1.70318 1.01340 1.29586 1.25529 1.23992 0.92734 0.89979 0.97021 1.19760 0.86798 0.95376 0.91616 0.87403 1.22610 1.01801 1.03337 0.96510 1.60431 1.18392 1.10405 1.40469 1.22752 0.91745 0.94222 0.94477 0.88277 1.22778 0.95340 1.00712 0.96887 1.22398 0.97020 1.00223 0.82993 1.48398 1.07728 1.72082 1.07790 1.20019 0.81402 0.75779 0.89343 1.90703 1.81520 1.50233 1.16891 1.23251 0.97269 1.05114 1.01131 1.84789 0.99926 1.92816 1.14141 1.22310 0.95628 1.55390 0.93523 0.89367 1.24701 0.95638 0.93227 0.97674 1.69934 1.05193 1.45607 1.30931 0.86740 0.79519 0.80606 0.85026 1.19205 1.19930 1.15941 1.22800 0.85924 1.01259 0.94373 1.78022 0.96175 1.12424 1.26135 1.48041 1.04528 1.09996 1.57831 0.71568 0.89016 0.89873 0.88309 0.91657 0.91437 0.90686 0.82555 0.89351 0.89989 0.89923 0.91017 0.88530 0.88508 0.91948 0.91508 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.51 36.01 0.38 0.20 16 2 C 0.28 1.99 8.24 -155.69 -1.28 0.70 16 3 N -0.54 -5.48 11.19 -8.16 -0.09 -5.57 16 4 C 0.25 2.56 6.99 -156.86 -1.10 1.46 16 5 C 0.18 1.55 3.13 -68.86 -0.22 1.34 16 6 H 0.11 0.90 7.49 -51.93 -0.39 0.51 16 7 C -0.18 -1.51 8.94 37.16 0.33 -1.18 16 8 N -0.67 -5.80 6.11 -99.03 -0.61 -6.41 16 9 C 0.08 0.67 3.24 -65.88 -0.21 0.45 16 10 H 0.10 0.75 7.53 -51.93 -0.39 0.36 16 11 C -0.12 -0.98 6.77 -24.58 -0.17 -1.15 16 12 C 0.10 0.99 6.69 -2.52 -0.02 0.98 16 13 N -0.62 -8.62 3.33 -170.52 -0.57 -9.18 16 14 C 0.55 10.22 7.87 -10.99 -0.09 10.13 16 15 O -0.52 -11.65 16.19 5.56 0.09 -11.56 16 16 C -0.12 -2.34 5.16 36.00 0.19 -2.15 16 17 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 18 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 22 Si 0.86 21.97 27.74 -169.99 -4.71 17.26 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 26 C 0.08 0.92 4.94 -3.06 -0.02 0.91 16 27 N -0.30 -3.10 12.78 32.42 0.41 -2.69 16 28 N -0.49 -3.42 7.45 32.62 0.24 -3.17 16 29 H 0.44 1.50 8.96 -182.33 -1.63 -0.14 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.62 5.91 -51.93 -0.31 0.31 16 36 H 0.35 3.22 7.90 -39.29 -0.31 2.91 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.84 7.48 -51.93 -0.39 0.46 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 42 H 0.10 1.80 7.85 -51.92 -0.41 1.40 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 45 H 0.07 0.78 7.48 -51.93 -0.39 0.40 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -37.66 384.00 -10.63 -48.30 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.99 Total: -0.81 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.98 Total: -0.39 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.17 Total: -52.91 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.66 -10.63 -48.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317296356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.179 kcal (2) G-P(sol) polarization free energy of solvation -37.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds