Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30831 * 125.96123 * 2 1 4 4 C 1.33236 * 109.82603 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.52578 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47294 * 14.99869 * 5 4 3 7 7 C 1.53002 * 109.47093 * 255.00159 * 5 4 3 8 8 N 1.46905 * 109.47206 * 135.00150 * 5 4 3 9 9 C 1.46901 * 110.99870 * 205.00135 * 8 5 4 10 10 H 1.08999 * 110.64443 * 36.68189 * 9 8 5 11 11 C 1.55156 * 110.71821 * 160.02334 * 9 8 5 12 12 C 1.54914 * 101.57967 * 153.86308 * 11 9 8 13 13 N 1.47430 * 104.83256 * 322.98986 * 12 11 9 14 14 C 1.34777 * 125.64593 * 204.16466 * 13 12 11 15 15 O 1.21279 * 119.99786 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00083 * 359.95743 * 14 13 12 17 17 S 1.81002 * 109.47096 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00119 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99785 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00164 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00245 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99641 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47238 * 90.00377 * 22 20 18 24 24 H 1.48498 * 109.47036 * 210.00045 * 22 20 18 25 25 H 1.48502 * 109.47348 * 329.99912 * 22 20 18 26 26 C 1.47024 * 108.70132 * 24.12882 * 13 12 11 27 27 N 1.30714 * 108.95148 * 0.26415 * 4 3 2 28 28 N 1.34427 * 125.95639 * 180.02562 * 2 1 3 29 29 H 0.96999 * 126.82845 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47089 * 89.99205 * 1 2 3 31 31 H 1.08998 * 109.47251 * 209.99556 * 1 2 3 32 32 H 1.09004 * 109.47029 * 330.00125 * 1 2 3 33 33 H 1.09003 * 109.46813 * 300.00004 * 7 5 4 34 34 H 1.08999 * 109.47105 * 60.00118 * 7 5 4 35 35 H 1.08996 * 109.46950 * 179.97438 * 7 5 4 36 36 H 1.00901 * 110.99869 * 81.04847 * 8 5 4 37 37 H 1.08998 * 111.00396 * 271.93169 * 11 9 8 38 38 H 1.08995 * 111.00808 * 35.79146 * 11 9 8 39 39 H 1.08999 * 110.36950 * 204.15014 * 12 11 9 40 40 H 1.08998 * 110.45977 * 81.87473 * 12 11 9 41 41 H 1.08998 * 109.47293 * 300.00178 * 16 14 13 42 42 H 1.08995 * 109.47387 * 60.00233 * 16 14 13 43 43 H 0.96995 * 120.00012 * 179.97438 * 21 20 18 44 44 H 1.08992 * 109.87883 * 239.52183 * 26 13 12 45 45 H 1.08995 * 110.01000 * 118.43053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 1 4.4066 2.6273 0.2665 7 6 5.3685 1.6480 -1.3937 8 7 5.7291 1.1584 0.9786 9 6 6.5677 2.2699 1.4470 10 1 5.9799 3.1833 1.5372 11 6 7.2473 1.9142 2.7957 12 6 8.5117 2.8083 2.7521 13 7 8.9349 2.7948 1.3400 14 6 10.1846 3.0278 0.8923 15 8 10.4196 2.9902 -0.2969 16 6 11.2899 3.3354 1.8694 17 16 12.8368 3.5989 0.9672 18 6 13.9240 3.9290 2.3138 19 1 13.5474 3.9225 3.3260 20 6 15.2645 4.1975 2.0738 21 7 16.0766 4.4447 3.0797 22 14 15.9159 4.2081 0.3231 23 1 15.7971 5.5766 -0.2410 24 1 17.3422 3.7949 0.3232 25 1 15.1263 3.2612 -0.5047 26 6 7.7681 2.4844 0.5011 27 7 3.6194 -0.6169 -0.0066 28 7 2.2964 -1.0881 -0.0005 29 1 2.0093 -2.0147 -0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.6992 0.6442 -1.6604 34 1 4.6326 1.9932 -2.1199 35 1 6.2232 2.3245 -1.3935 36 1 6.2943 0.4155 0.5955 37 1 6.6086 2.1817 3.6375 38 1 7.5163 0.8586 2.8313 39 1 9.2936 2.3908 3.3865 40 1 8.2712 3.8238 3.0664 41 1 11.0390 4.2358 2.4302 42 1 11.4087 2.4994 2.5586 43 1 17.0134 4.6319 2.9120 44 1 7.9550 1.5766 -0.0724 45 1 7.5635 3.3144 -0.1751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317296356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = 25.718508 kcal Electronic energy + Delta-G solvation = -26154.816213 eV Core-core repulsion = 22334.067288 eV Total energy + Delta-G solvation = -3820.748925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.11831 -41.18599 -39.22106 -37.08443 -34.68259 -33.99713 -33.30677 -32.47404 -31.02613 -30.28692 -28.81540 -28.28773 -27.79873 -25.11371 -24.29064 -22.18850 -21.87191 -21.05008 -20.79440 -19.63991 -18.87287 -18.16016 -17.59776 -17.13591 -16.87627 -16.64603 -16.23220 -16.19021 -15.68175 -15.45931 -14.95600 -14.91441 -14.85800 -14.45573 -14.11865 -13.93650 -13.70054 -13.64913 -13.53082 -13.34815 -13.25822 -13.06409 -13.00518 -12.75696 -12.68746 -12.57476 -12.44421 -12.29040 -11.88793 -11.72236 -11.17874 -11.09018 -11.05338 -11.04661 -10.55202 -10.44334 -9.80356 -9.57827 -9.01966 -8.52227 -6.23661 0.64148 0.94891 1.30538 1.44292 1.49227 1.52216 1.77137 1.82317 2.03413 2.24380 2.65927 2.75865 2.85972 3.23015 3.47382 3.60084 3.67439 3.80397 3.87878 4.05014 4.10456 4.16133 4.23529 4.29351 4.35513 4.40021 4.53334 4.60835 4.71032 4.72402 4.75807 4.80460 4.86814 5.05377 5.07331 5.10671 5.18896 5.28253 5.31507 5.42422 5.70149 5.88997 6.10578 6.20341 6.24596 6.32928 6.92870 7.03344 7.13177 8.60103 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.037320 B = 0.001815 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.086040 B =15427.018027 C =15832.192237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.284 3.716 3 N -0.572 5.572 4 C 0.234 3.766 5 C 0.180 3.820 6 H 0.113 0.887 7 C -0.174 4.174 8 N -0.663 5.663 9 C 0.092 3.908 10 H 0.116 0.884 11 C -0.108 4.108 12 C 0.088 3.912 13 N -0.613 5.613 14 C 0.546 3.454 15 O -0.566 6.566 16 C -0.102 4.102 17 S -0.177 6.177 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.048 3.952 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.239 1.239 26 C 0.079 3.921 27 N -0.331 5.331 28 N -0.480 5.480 29 H 0.453 0.547 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.351 0.649 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.059 0.941 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.346 -10.148 -3.291 37.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 N -0.303 5.303 4 C -0.049 4.049 5 C 0.067 3.933 6 H 0.131 0.869 7 C -0.234 4.234 8 N -0.294 5.294 9 C -0.019 4.019 10 H 0.134 0.866 11 C -0.146 4.146 12 C -0.034 4.034 13 N -0.348 5.348 14 C 0.333 3.667 15 O -0.445 6.445 16 C -0.253 4.253 17 S 0.050 5.950 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.158 4.158 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.182 1.182 25 H -0.163 1.163 26 C -0.045 4.045 27 N -0.160 5.160 28 N -0.200 5.200 29 H 0.301 0.699 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -35.637 -10.171 -4.443 37.325 hybrid contribution 0.974 -0.368 0.142 1.051 sum -34.662 -10.538 -4.301 36.483 Atomic orbital electron populations 1.20628 0.80340 1.06468 1.05938 1.25199 0.98183 0.82149 0.93836 1.70318 1.01586 1.31204 1.27218 1.24209 0.93308 0.90199 0.97212 1.19768 0.86522 0.95404 0.91589 0.86877 1.22513 1.01622 1.02732 0.96514 1.60456 1.18136 1.10248 1.40536 1.22734 0.90594 0.94893 0.93669 0.86597 1.22753 0.94462 1.00023 0.97397 1.22737 0.97991 1.01977 0.80664 1.48357 1.06721 1.69639 1.10052 1.19699 0.82594 0.76096 0.88262 1.90682 1.82539 1.52877 1.18366 1.23201 0.94638 1.06440 1.00975 1.84722 1.02928 1.92962 1.14408 1.22439 0.96606 1.55129 0.93494 0.91861 1.25528 0.95959 0.92901 1.01381 1.70007 1.05852 1.46541 1.32888 0.85888 0.79539 0.80703 0.80369 1.18650 1.18186 1.16267 1.23015 0.85895 1.00792 0.94820 1.77922 0.98180 1.12664 1.27221 1.47994 1.03605 1.10950 1.57405 0.69851 0.87449 0.87140 0.88170 0.92482 0.91425 0.90779 0.82869 0.87014 0.90420 0.89721 0.89078 0.87016 0.87117 0.91329 0.92316 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.51 71.24 0.75 0.60 16 2 C 0.28 3.57 8.24 138.23 1.14 4.70 16 3 N -0.57 -11.06 11.19 -179.72 -2.01 -13.07 16 4 C 0.23 4.69 6.99 138.63 0.97 5.66 16 5 C 0.18 2.98 3.13 44.17 0.14 3.12 16 6 H 0.11 1.73 7.49 -2.39 -0.02 1.71 16 7 C -0.17 -2.81 8.94 71.98 0.64 -2.17 16 8 N -0.66 -10.63 6.11 -467.22 -2.86 -13.48 16 9 C 0.09 1.35 3.24 46.10 0.15 1.50 16 10 H 0.12 1.40 7.53 -2.39 -0.02 1.38 16 11 C -0.11 -1.48 6.77 31.99 0.22 -1.26 16 12 C 0.09 1.58 6.69 86.86 0.58 2.16 16 13 N -0.61 -16.08 3.33 -811.80 -2.70 -18.78 16 14 C 0.55 20.09 7.87 87.66 0.69 20.78 16 15 O -0.57 -25.54 16.19 -3.03 -0.05 -25.59 16 16 C -0.10 -4.00 5.16 71.23 0.37 -3.63 16 17 S -0.18 -9.15 18.55 -56.49 -1.05 -10.20 16 18 C -0.53 -31.15 10.04 67.95 0.68 -30.47 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 20 C 0.05 2.83 5.50 84.86 0.47 3.30 16 21 N -0.92 -55.93 13.97 21.65 0.30 -55.62 16 22 Si 0.91 45.48 27.74 68.60 1.90 47.38 16 23 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 26 C 0.08 1.70 4.94 86.73 0.43 2.12 16 27 N -0.33 -6.63 12.78 -51.33 -0.66 -7.29 16 28 N -0.48 -6.11 7.45 -50.70 -0.38 -6.48 16 29 H 0.45 2.38 8.96 -213.09 -1.91 0.47 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.19 5.91 -2.39 -0.01 1.18 16 36 H 0.35 6.10 7.90 -89.69 -0.71 5.40 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.53 7.48 -2.39 -0.02 1.51 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 42 H 0.11 4.03 7.85 -2.40 -0.02 4.01 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.06 1.38 7.54 -2.39 -0.02 1.36 16 45 H 0.07 1.46 7.48 -2.39 -0.02 1.44 16 Total: -1.00 -82.74 384.00 -1.90 -84.63 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -1.63 Total: 12.09 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 7.22 Total: 6.42 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -8.30 Total: -114.73 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.20 kcal Total: -82.74 -1.90 -84.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317296356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.353 kcal (2) G-P(sol) polarization free energy of solvation -82.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds