Wall clock time and date at job start Sat Apr 11 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30834 * 125.95848 * 2 1 4 4 C 1.33247 * 109.82708 * 180.19092 * 3 2 1 5 5 C 1.50699 * 125.52659 * 179.85508 * 4 3 2 6 6 N 1.46906 * 109.47140 * 269.72016 * 5 4 3 7 7 C 1.46898 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.46764 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.88713 * 302.57096 * 8 7 6 10 10 C 1.55157 * 111.00134 * 178.65072 * 8 7 6 11 11 C 1.54324 * 102.94082 * 206.42375 * 10 8 7 12 12 N 1.47026 * 107.26876 * 22.19076 * 11 10 8 13 13 C 1.34778 * 125.64560 * 181.09139 * 12 11 10 14 14 O 1.21275 * 120.00094 * 179.97438 * 13 12 11 15 15 C 1.50708 * 119.99982 * 359.96237 * 13 12 11 16 16 S 1.80996 * 109.46916 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99816 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00284 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99986 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00039 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47104 * 89.99894 * 21 19 17 23 23 H 1.48505 * 109.47118 * 209.99951 * 21 19 17 24 24 H 1.48497 * 109.47087 * 329.99857 * 21 19 17 25 25 C 1.47415 * 108.70454 * 1.06089 * 12 11 10 26 26 N 1.30710 * 108.94446 * 359.59320 * 4 3 2 27 27 N 1.34433 * 125.96241 * 179.75153 * 2 1 3 28 28 H 0.96996 * 126.82384 * 359.93248 * 27 2 1 29 29 H 1.09005 * 109.47316 * 270.24725 * 1 2 3 30 30 H 1.09003 * 109.47400 * 30.24492 * 1 2 3 31 31 H 1.09005 * 109.47044 * 150.24480 * 1 2 3 32 32 H 1.09000 * 109.47247 * 149.72037 * 5 4 3 33 33 H 1.09001 * 109.47358 * 29.71464 * 5 4 3 34 34 H 1.00902 * 110.99923 * 303.95945 * 6 5 4 35 35 H 1.08995 * 109.47296 * 299.99911 * 7 6 5 36 36 H 1.08997 * 109.47334 * 60.00212 * 7 6 5 37 37 H 1.09001 * 110.72206 * 324.78557 * 10 8 7 38 38 H 1.09000 * 110.71823 * 88.06069 * 10 8 7 39 39 H 1.08994 * 109.88188 * 262.77822 * 11 10 8 40 40 H 1.08999 * 110.01266 * 141.67913 * 11 10 8 41 41 H 1.08990 * 109.47033 * 300.00021 * 15 13 12 42 42 H 1.09001 * 109.46930 * 59.99805 * 15 13 12 43 43 H 0.97000 * 119.99510 * 180.02562 * 20 19 17 44 44 H 1.09005 * 110.36761 * 217.03050 * 25 12 11 45 45 H 1.09002 * 110.36634 * 94.70893 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0042 5 6 4.7372 1.6237 -0.0086 6 7 5.1207 1.9215 -1.3951 7 6 6.2728 2.8318 -1.4386 8 6 6.6423 3.1174 -2.8957 9 1 6.8590 2.1925 -3.4301 10 6 7.8364 4.1042 -2.9833 11 6 7.6262 4.7802 -4.3547 12 7 6.2055 4.6301 -4.7020 13 6 5.6235 5.0689 -5.8357 14 8 4.4381 4.8887 -6.0178 15 6 6.4458 5.7836 -6.8771 16 16 5.3866 6.2433 -8.2709 17 6 6.5709 7.0373 -9.3062 18 1 7.6005 7.1134 -8.9891 19 6 6.1806 7.5650 -10.5291 20 7 4.9257 7.4718 -10.9158 21 14 7.4359 8.4075 -11.6263 22 1 8.0500 7.4064 -12.5351 23 1 6.7637 9.4595 -12.4305 24 1 8.4920 9.0263 -10.7856 25 6 5.5232 3.9196 -3.6053 26 7 3.6194 -0.6167 0.0019 27 7 2.2964 -1.0881 0.0047 28 1 2.0094 -2.0146 0.0097 29 1 -0.3634 0.0044 1.0277 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5101 32 1 5.5744 1.1533 0.5069 33 1 4.4702 2.5494 0.5012 34 1 5.3107 1.0735 -1.9079 35 1 6.0170 3.7659 -0.9385 36 1 7.1206 2.3694 -0.9332 37 1 7.7891 4.8393 -2.1798 38 1 8.7840 3.5660 -2.9599 39 1 8.2453 4.2921 -5.1073 40 1 7.8829 5.8377 -4.2926 41 1 6.8832 6.6816 -6.4411 42 1 7.2408 5.1251 -7.2270 43 1 4.6531 7.8403 -11.7707 44 1 4.7665 3.2438 -4.0040 45 1 5.0711 4.6320 -2.9152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317319369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:33 Heat of formation + Delta-G solvation = 49.651001 kcal Electronic energy + Delta-G solvation = -25603.942011 eV Core-core repulsion = 21784.230876 eV Total energy + Delta-G solvation = -3819.711135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.50754 -39.77521 -37.71298 -36.20995 -33.54488 -32.74604 -32.38721 -31.89095 -29.57016 -29.29522 -28.37598 -26.62647 -25.45251 -24.32760 -22.64164 -21.78810 -21.03422 -20.37125 -19.18101 -18.31756 -17.64761 -16.57538 -16.44036 -16.21349 -15.98656 -15.12703 -15.01337 -14.79813 -14.76543 -14.43598 -14.02526 -13.79978 -13.62646 -13.32723 -13.29586 -13.12442 -12.74807 -12.60332 -12.51711 -12.30822 -12.19203 -11.96993 -11.68112 -11.32951 -11.09567 -11.02924 -10.97342 -10.84635 -10.72186 -10.47884 -10.36959 -9.89738 -9.76889 -9.29213 -9.02605 -8.80031 -8.35928 -8.17336 -6.44906 -6.17381 -3.87511 1.16439 2.20655 2.43331 3.02485 3.18369 3.25105 3.29631 3.33730 3.50835 3.70384 3.86813 4.18490 4.24473 4.35824 4.42970 4.51551 4.60862 4.80406 4.91032 4.99015 5.07066 5.12148 5.17464 5.20359 5.21759 5.31509 5.34003 5.44872 5.48749 5.60374 5.64267 5.72047 5.82738 5.84930 6.00329 6.01886 6.09065 6.12648 6.21022 6.52856 6.58755 6.62297 6.94582 7.63563 7.73228 7.81045 8.39455 8.68401 9.27644 10.90052 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.001814 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.773821 B =15435.836745 C =16675.938486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.283 3.717 3 N -0.523 5.523 4 C 0.236 3.764 5 C 0.155 3.845 6 N -0.680 5.680 7 C 0.074 3.926 8 C -0.101 4.101 9 H 0.084 0.916 10 C -0.124 4.124 11 C 0.102 3.898 12 N -0.629 5.629 13 C 0.547 3.453 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.125 3.875 26 N -0.316 5.316 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.080 0.920 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -16.532 27.153 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 N -0.252 5.252 4 C -0.047 4.047 5 C 0.024 3.976 6 N -0.313 5.313 7 C -0.055 4.055 8 C -0.120 4.120 9 H 0.102 0.898 10 C -0.162 4.162 11 C -0.021 4.021 12 N -0.367 5.367 13 C 0.335 3.665 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.002 3.998 26 N -0.146 5.146 27 N -0.202 5.202 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.164 0.836 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.582 -16.212 26.600 31.191 hybrid contribution 2.582 -0.593 -0.280 2.664 sum 1.000 -16.805 26.320 31.243 Atomic orbital electron populations 1.20426 0.83492 1.05347 1.04568 1.24494 0.96782 0.82717 0.95507 1.70406 1.01315 1.29246 1.24257 1.24058 0.93508 0.89671 0.97495 1.20088 0.90129 0.96309 0.91101 1.60345 1.39189 1.19769 1.11972 1.21912 0.90688 0.97204 0.95715 1.22371 0.95449 0.98828 0.95381 0.89788 1.22650 0.98342 0.98311 0.96927 1.21959 0.83005 1.00864 0.96308 1.48555 1.09704 1.59406 1.19026 1.19985 0.87800 0.78140 0.80533 1.90709 1.15529 1.55770 1.76961 1.23506 1.03586 1.02172 1.00419 1.85406 1.12639 1.73841 1.11594 1.22866 0.96664 1.42943 1.05767 0.90965 1.24997 0.95915 0.95733 0.96993 1.70030 1.15567 1.43396 1.21296 0.86169 0.80460 0.78976 0.79889 1.20306 1.20759 1.19711 1.22052 0.94790 0.94844 0.88081 1.77963 0.97057 1.12478 1.27101 1.47975 1.04234 1.10098 1.57887 0.71493 0.88962 0.88008 0.89799 0.92681 0.87987 0.83644 0.90030 0.94350 0.90300 0.90049 0.91451 0.91315 0.89386 0.89433 0.92223 0.90190 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.51 36.00 0.38 0.09 16 2 C 0.28 2.27 8.24 -155.69 -1.28 0.99 16 3 N -0.52 -5.88 11.19 -8.16 -0.09 -5.97 16 4 C 0.24 2.50 7.65 -156.85 -1.20 1.30 16 5 C 0.16 1.29 6.31 -4.97 -0.03 1.26 16 6 N -0.68 -5.98 6.31 -115.05 -0.73 -6.71 16 7 C 0.07 0.53 5.13 -3.82 -0.02 0.51 16 8 C -0.10 -0.89 3.23 -88.47 -0.29 -1.18 16 9 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 10 C -0.12 -0.96 6.42 -24.90 -0.16 -1.12 16 11 C 0.10 1.15 6.49 -3.06 -0.02 1.13 16 12 N -0.63 -9.76 3.33 -170.53 -0.57 -10.32 16 13 C 0.55 11.27 7.87 -10.98 -0.09 11.18 16 14 O -0.52 -12.74 16.12 5.56 0.09 -12.65 16 15 C -0.15 -3.15 5.35 36.01 0.19 -2.95 16 16 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 17 C -0.53 -15.55 9.50 30.94 0.29 -15.26 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.61 13.22 55.49 0.73 -25.87 16 21 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 C 0.13 1.66 6.20 -2.54 -0.02 1.64 16 26 N -0.32 -3.25 12.80 32.42 0.41 -2.83 16 27 N -0.48 -3.56 7.45 32.62 0.24 -3.32 16 28 H 0.44 1.59 8.96 -182.34 -1.63 -0.04 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.35 3.06 8.72 -39.29 -0.34 2.72 16 35 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.53 8.04 -51.93 -0.42 0.12 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 45 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -39.17 393.92 -11.80 -50.97 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.27 Total: -1.61 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.33 Total: -0.39 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.01 Total: -55.02 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.17 -11.80 -50.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317319369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.616 kcal (2) G-P(sol) polarization free energy of solvation -39.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds