Wall clock time and date at job start Sat Apr 11 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30834 * 125.95848 * 2 1 4 4 C 1.33247 * 109.82708 * 180.19092 * 3 2 1 5 5 C 1.50699 * 125.52659 * 179.85508 * 4 3 2 6 6 N 1.46906 * 109.47140 * 269.72016 * 5 4 3 7 7 C 1.46898 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.46764 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.88713 * 302.57096 * 8 7 6 10 10 C 1.55157 * 111.00134 * 178.65072 * 8 7 6 11 11 C 1.54324 * 102.94082 * 206.42375 * 10 8 7 12 12 N 1.47026 * 107.26876 * 22.19076 * 11 10 8 13 13 C 1.34778 * 125.64560 * 181.09139 * 12 11 10 14 14 O 1.21275 * 120.00094 * 179.97438 * 13 12 11 15 15 C 1.50708 * 119.99982 * 359.96237 * 13 12 11 16 16 S 1.80996 * 109.46916 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99816 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00284 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99986 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00039 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47104 * 89.99894 * 21 19 17 23 23 H 1.48505 * 109.47118 * 209.99951 * 21 19 17 24 24 H 1.48497 * 109.47087 * 329.99857 * 21 19 17 25 25 C 1.47415 * 108.70454 * 1.06089 * 12 11 10 26 26 N 1.30710 * 108.94446 * 359.59320 * 4 3 2 27 27 N 1.34433 * 125.96241 * 179.75153 * 2 1 3 28 28 H 0.96996 * 126.82384 * 359.93248 * 27 2 1 29 29 H 1.09005 * 109.47316 * 270.24725 * 1 2 3 30 30 H 1.09003 * 109.47400 * 30.24492 * 1 2 3 31 31 H 1.09005 * 109.47044 * 150.24480 * 1 2 3 32 32 H 1.09000 * 109.47247 * 149.72037 * 5 4 3 33 33 H 1.09001 * 109.47358 * 29.71464 * 5 4 3 34 34 H 1.00902 * 110.99923 * 303.95945 * 6 5 4 35 35 H 1.08995 * 109.47296 * 299.99911 * 7 6 5 36 36 H 1.08997 * 109.47334 * 60.00212 * 7 6 5 37 37 H 1.09001 * 110.72206 * 324.78557 * 10 8 7 38 38 H 1.09000 * 110.71823 * 88.06069 * 10 8 7 39 39 H 1.08994 * 109.88188 * 262.77822 * 11 10 8 40 40 H 1.08999 * 110.01266 * 141.67913 * 11 10 8 41 41 H 1.08990 * 109.47033 * 300.00021 * 15 13 12 42 42 H 1.09001 * 109.46930 * 59.99805 * 15 13 12 43 43 H 0.97000 * 119.99510 * 180.02562 * 20 19 17 44 44 H 1.09005 * 110.36761 * 217.03050 * 25 12 11 45 45 H 1.09002 * 110.36634 * 94.70893 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0042 5 6 4.7372 1.6237 -0.0086 6 7 5.1207 1.9215 -1.3951 7 6 6.2728 2.8318 -1.4386 8 6 6.6423 3.1174 -2.8957 9 1 6.8590 2.1925 -3.4301 10 6 7.8364 4.1042 -2.9833 11 6 7.6262 4.7802 -4.3547 12 7 6.2055 4.6301 -4.7020 13 6 5.6235 5.0689 -5.8357 14 8 4.4381 4.8887 -6.0178 15 6 6.4458 5.7836 -6.8771 16 16 5.3866 6.2433 -8.2709 17 6 6.5709 7.0373 -9.3062 18 1 7.6005 7.1134 -8.9891 19 6 6.1806 7.5650 -10.5291 20 7 4.9257 7.4718 -10.9158 21 14 7.4359 8.4075 -11.6263 22 1 8.0500 7.4064 -12.5351 23 1 6.7637 9.4595 -12.4305 24 1 8.4920 9.0263 -10.7856 25 6 5.5232 3.9196 -3.6053 26 7 3.6194 -0.6167 0.0019 27 7 2.2964 -1.0881 0.0047 28 1 2.0094 -2.0146 0.0097 29 1 -0.3634 0.0044 1.0277 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5101 32 1 5.5744 1.1533 0.5069 33 1 4.4702 2.5494 0.5012 34 1 5.3107 1.0735 -1.9079 35 1 6.0170 3.7659 -0.9385 36 1 7.1206 2.3694 -0.9332 37 1 7.7891 4.8393 -2.1798 38 1 8.7840 3.5660 -2.9599 39 1 8.2453 4.2921 -5.1073 40 1 7.8829 5.8377 -4.2926 41 1 6.8832 6.6816 -6.4411 42 1 7.2408 5.1251 -7.2270 43 1 4.6531 7.8403 -11.7707 44 1 4.7665 3.2438 -4.0040 45 1 5.0711 4.6320 -2.9152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317319369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:32 Heat of formation + Delta-G solvation = 20.078546 kcal Electronic energy + Delta-G solvation = -25605.224369 eV Core-core repulsion = 21784.230876 eV Total energy + Delta-G solvation = -3820.993492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.15255 -41.03962 -38.89553 -37.06705 -34.59114 -34.28224 -33.36686 -32.91468 -30.84334 -30.28164 -29.00992 -27.76875 -27.35489 -25.28587 -23.51683 -22.38753 -21.73194 -21.11641 -20.67680 -19.54957 -18.92785 -18.03078 -17.51651 -16.93545 -16.88797 -16.77790 -16.36132 -16.08388 -15.63098 -15.55185 -15.34892 -14.72427 -14.60736 -14.36561 -14.20346 -13.84006 -13.71956 -13.67514 -13.47945 -13.30375 -13.15695 -13.13923 -12.88808 -12.78448 -12.61449 -12.58834 -12.06852 -11.94150 -11.71742 -11.55986 -11.15673 -11.14491 -11.07724 -10.96120 -10.54208 -10.29017 -9.66251 -9.39556 -8.69246 -8.34766 -6.14128 0.53004 1.24265 1.42891 1.45238 1.56709 1.57076 1.68945 1.76437 2.13259 2.27195 2.95578 2.99052 3.19913 3.30296 3.56576 3.65487 3.68567 3.83796 3.91721 4.01039 4.21153 4.35016 4.35994 4.41353 4.44939 4.50725 4.53485 4.68441 4.69749 4.77289 4.80537 4.83724 4.96859 5.03857 5.05035 5.13691 5.20980 5.33251 5.35292 5.41038 5.45855 5.95697 6.17031 6.19509 6.31264 6.43200 7.05784 7.08341 7.13123 8.74699 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.001814 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.773821 B =15435.836745 C =16675.938486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.283 3.717 3 N -0.567 5.567 4 C 0.222 3.778 5 C 0.159 3.841 6 N -0.698 5.698 7 C 0.080 3.920 8 C -0.086 4.086 9 H 0.085 0.915 10 C -0.109 4.109 11 C 0.087 3.913 12 N -0.620 5.620 13 C 0.542 3.458 14 O -0.571 6.571 15 C -0.118 4.118 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.002 2.998 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.257 1.257 25 C 0.120 3.880 26 N -0.339 5.339 27 N -0.475 5.475 28 H 0.455 0.545 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.343 0.657 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.048 0.952 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 -16.921 28.734 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.006 3.994 3 N -0.298 5.298 4 C -0.061 4.061 5 C 0.028 3.972 6 N -0.330 5.330 7 C -0.048 4.048 8 C -0.106 4.106 9 H 0.103 0.897 10 C -0.147 4.147 11 C -0.034 4.034 12 N -0.355 5.355 13 C 0.330 3.670 14 O -0.450 6.450 15 C -0.269 4.269 16 S 0.073 5.927 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.823 3.177 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.181 1.181 25 C -0.002 4.002 26 N -0.170 5.170 27 N -0.196 5.196 28 H 0.303 0.697 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.161 0.839 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.209 -16.642 28.241 32.802 hybrid contribution 1.679 -0.564 -0.644 1.884 sum 2.887 -17.206 27.597 32.649 Atomic orbital electron populations 1.20630 0.80564 1.06280 1.06073 1.25215 0.98239 0.82192 0.93803 1.70398 1.02097 1.31123 1.26145 1.24477 0.94044 0.90116 0.97478 1.20117 0.90024 0.96126 0.90917 1.60329 1.40291 1.19983 1.12420 1.21901 0.91143 0.97319 0.94470 1.22307 0.93996 0.98376 0.95932 0.89705 1.22673 0.98841 0.98138 0.95027 1.22396 0.80023 1.02239 0.98791 1.48555 1.11943 1.57408 1.17582 1.19833 0.87035 0.78368 0.81793 1.90682 1.17671 1.58256 1.78440 1.23292 1.02313 1.03350 0.97910 1.85625 1.16738 1.74659 1.15689 1.23190 0.96852 1.43089 1.06198 0.89847 1.26183 0.98248 0.96235 0.98623 1.70201 1.18089 1.44528 1.22000 0.84911 0.77502 0.77767 0.77517 1.19230 1.20213 1.18079 1.22209 0.95947 0.94648 0.87365 1.77863 0.98687 1.12535 1.27924 1.47922 1.03402 1.10939 1.57294 0.69676 0.87000 0.88758 0.87122 0.91042 0.87956 0.83942 0.89613 0.91580 0.88513 0.86985 0.90593 0.90347 0.87551 0.87604 0.91963 0.93318 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.51 71.23 0.75 0.29 16 2 C 0.28 4.42 8.24 138.22 1.14 5.56 16 3 N -0.57 -12.91 11.19 -179.73 -2.01 -14.92 16 4 C 0.22 4.72 7.65 138.63 1.06 5.78 16 5 C 0.16 2.53 6.31 85.56 0.54 3.07 16 6 N -0.70 -11.68 6.31 -517.92 -3.27 -14.95 16 7 C 0.08 0.95 5.13 86.31 0.44 1.40 16 8 C -0.09 -1.33 3.23 -9.40 -0.03 -1.36 16 9 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 10 C -0.11 -1.24 6.42 31.78 0.20 -1.04 16 11 C 0.09 1.71 6.49 86.73 0.56 2.27 16 12 N -0.62 -18.84 3.33 -811.81 -2.70 -21.54 16 13 C 0.54 22.76 7.87 87.66 0.69 23.45 16 14 O -0.57 -29.73 16.12 -3.01 -0.05 -29.78 16 15 C -0.12 -5.06 5.35 71.24 0.38 -4.68 16 16 S -0.15 -8.99 20.57 -56.49 -1.16 -10.15 16 17 C -0.55 -31.99 9.50 67.95 0.65 -31.35 16 18 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.91 -57.20 13.22 21.65 0.29 -56.91 16 21 Si 1.00 44.27 29.55 68.60 2.03 46.29 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 C 0.12 3.17 6.20 86.86 0.54 3.71 16 26 N -0.34 -6.90 12.80 -51.33 -0.66 -7.56 16 27 N -0.48 -6.73 7.45 -50.71 -0.38 -7.10 16 28 H 0.45 2.85 8.96 -213.10 -1.91 0.94 16 29 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.05 8.14 -2.38 -0.02 0.04 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.34 5.91 8.72 -89.69 -0.78 5.13 16 35 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 0.84 8.04 -2.39 -0.02 0.82 16 38 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 42 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.05 1.59 8.04 -2.38 -0.02 1.57 16 45 H 0.06 1.73 8.00 -2.39 -0.02 1.71 16 Total: -1.00 -90.31 393.92 -2.20 -92.51 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -1.68 Total: 15.87 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 7.39 Total: 8.25 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -8.73 Total: -122.99 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.15 kcal Total: -90.31 -2.20 -92.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317319369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.587 kcal (2) G-P(sol) polarization free energy of solvation -90.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds