Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47395 * 2 1 4 4 C 1.39264 * 119.78290 * 124.72897 * 3 2 1 5 5 C 1.38153 * 119.01504 * 179.70396 * 4 3 2 6 6 N 1.37712 * 120.64427 * 180.26675 * 5 4 3 7 7 C 1.46498 * 119.99984 * 0.33118 * 6 5 4 8 8 C 1.50703 * 109.47024 * 180.02562 * 7 6 5 9 9 C 1.38319 * 119.96660 * 269.72955 * 8 7 6 10 10 C 1.38278 * 120.13333 * 179.77058 * 9 8 7 11 11 C 1.38121 * 120.07367 * 0.50285 * 10 9 8 12 12 C 1.38855 * 119.92691 * 359.75007 * 11 10 9 13 13 O 1.35753 * 120.06915 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99884 * 354.48606 * 13 12 11 15 15 H 1.08004 * 119.99998 * 5.06035 * 14 13 12 16 16 C 1.38645 * 120.00052 * 185.05600 * 14 13 12 17 17 N 1.31553 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47440 * 89.99748 * 18 16 14 20 20 H 1.48504 * 109.47210 * 210.00237 * 18 16 14 21 21 H 1.48505 * 109.46755 * 329.99751 * 18 16 14 22 22 C 1.38081 * 119.96175 * 90.00660 * 8 7 6 23 23 N 1.36512 * 118.70958 * 0.59517 * 5 4 3 24 24 N 1.40069 * 133.37436 * 179.71115 * 23 5 4 25 25 C 1.31066 * 107.03861 * 179.97438 * 24 23 5 26 26 N 1.32725 * 109.62852 * 0.02562 * 25 24 23 27 27 C 1.32858 * 109.73993 * 359.97438 * 26 25 24 28 28 N 1.31647 * 119.78453 * 305.00631 * 3 2 1 29 29 H 1.09000 * 109.47573 * 59.99697 * 1 2 3 30 30 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46741 * 299.99454 * 1 2 3 32 32 H 1.08999 * 109.46653 * 240.00377 * 2 1 3 33 33 H 1.09003 * 109.47330 * 120.00763 * 2 1 3 34 34 H 1.07998 * 120.48936 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99951 * 180.34036 * 6 5 4 36 36 H 1.08996 * 109.47243 * 300.00750 * 7 6 5 37 37 H 1.09001 * 109.46886 * 60.00905 * 7 6 5 38 38 H 1.07996 * 119.93452 * 359.97438 * 9 8 7 39 39 H 1.08008 * 119.96402 * 180.25315 * 10 9 8 40 40 H 1.08002 * 120.03794 * 179.76910 * 11 10 9 41 41 H 0.97005 * 120.00646 * 179.97438 * 17 16 14 42 42 H 1.07998 * 120.03363 * 359.95123 * 22 8 7 43 43 H 1.07997 * 125.18538 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9122 1.8434 0.9934 5 6 3.3676 3.1475 0.9746 6 7 4.2426 3.5994 1.9373 7 6 4.7050 2.6923 2.9906 8 6 5.6466 3.4277 3.9092 9 6 7.0045 3.4339 3.6460 10 6 7.8709 4.1115 4.4839 11 6 7.3838 4.7759 5.5925 12 6 6.0217 4.7672 5.8623 13 8 5.5399 5.4188 6.9514 14 6 6.4454 5.9578 7.7926 15 1 7.4961 5.9319 7.5437 16 6 6.0278 6.5453 8.9769 17 7 4.7481 6.5765 9.2803 18 14 7.2823 7.2927 10.1419 19 1 7.4895 8.7219 9.7958 20 1 6.7856 7.1884 11.5375 21 1 8.5692 6.5619 10.0187 22 6 5.1533 4.0899 5.0159 23 7 2.9281 3.9815 -0.0128 24 7 3.1767 5.3257 -0.3181 25 6 2.4802 5.6110 -1.3911 26 7 1.8072 4.5368 -1.7844 27 6 2.0595 3.5235 -0.9630 28 7 1.6324 2.2558 -0.9359 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 3.2377 1.1602 1.7639 35 1 4.5525 4.5184 1.9180 36 1 3.8492 2.3315 3.5610 37 1 5.2238 1.8464 2.5396 38 1 7.3884 2.9112 2.7824 39 1 8.9303 4.1180 4.2735 40 1 8.0615 5.3019 6.2487 41 1 4.4559 6.9872 10.1091 42 1 4.0934 4.0816 5.2229 43 1 2.4567 6.5737 -1.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321801111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = 131.529276 kcal Electronic energy + Delta-G solvation = -27510.780060 eV Core-core repulsion = 23559.175482 eV Total energy + Delta-G solvation = -3951.604577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.87725 -39.60457 -39.11966 -37.63369 -36.40774 -34.11411 -33.13869 -32.44952 -31.17808 -30.28713 -29.88420 -29.23592 -26.42400 -25.39256 -25.11816 -23.84467 -21.92927 -21.91957 -21.57513 -21.05121 -19.12419 -18.09409 -17.71996 -17.14941 -16.84049 -16.68776 -15.48550 -15.37078 -15.24737 -15.01499 -14.63388 -14.53957 -14.23411 -14.13887 -13.89516 -13.76396 -13.45337 -13.10566 -12.83166 -12.70390 -12.50368 -12.14546 -11.98406 -11.79466 -11.77693 -11.52473 -11.32080 -11.04699 -11.01567 -10.88430 -10.56613 -10.23413 -10.02386 -9.97923 -9.58521 -9.55249 -9.00712 -8.47340 -8.05965 -7.49640 -6.60168 -4.20155 0.59504 0.74684 1.43927 1.81818 2.09601 2.53588 2.86635 3.03720 3.04184 3.09118 3.29131 3.40346 3.82871 3.98523 4.28992 4.42586 4.56342 4.60982 4.80466 4.88290 4.95909 4.98038 5.06138 5.13295 5.22588 5.32565 5.37290 5.49092 5.54376 5.62691 5.65876 5.77204 5.85649 5.91079 6.01485 6.06610 6.12143 6.25979 6.34720 6.53911 6.62535 6.82502 6.94506 6.99777 7.11552 7.21108 7.52396 7.55793 7.83076 7.92919 8.84797 9.50815 10.57155 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002212 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.015080 B =12654.231113 C =12960.272354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.267 3.733 4 C -0.329 4.329 5 C 0.494 3.506 6 N -0.692 5.692 7 C 0.168 3.832 8 C -0.082 4.082 9 C -0.193 4.193 10 C -0.075 4.075 11 C -0.220 4.220 12 C 0.149 3.851 13 O -0.173 6.173 14 C -0.395 4.395 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.858 5.858 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.167 4.167 23 N -0.365 5.365 24 N -0.350 5.350 25 C 0.255 3.745 26 N -0.544 5.544 27 C 0.487 3.513 28 N -0.511 5.511 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.166 0.834 35 H 0.420 0.580 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.272 0.728 42 H 0.119 0.881 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -11.201 -14.856 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C 0.109 3.891 4 C -0.362 4.362 5 C 0.267 3.733 6 N -0.318 5.318 7 C 0.046 3.954 8 C -0.083 4.083 9 C -0.212 4.212 10 C -0.093 4.093 11 C -0.240 4.240 12 C 0.095 3.905 13 O -0.076 6.076 14 C -0.471 4.471 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.492 5.492 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.187 4.187 23 N -0.151 5.151 24 N -0.181 5.181 25 C -0.047 4.047 26 N -0.278 5.278 27 C 0.126 3.874 28 N -0.234 5.234 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.183 0.817 35 H 0.258 0.742 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.412 -10.650 -15.109 18.642 hybrid contribution 1.487 1.133 1.337 2.299 sum -0.925 -9.517 -13.771 16.765 Atomic orbital electron populations 1.21699 0.93344 1.02170 1.03177 1.20594 0.97559 0.88751 1.04162 1.21466 0.86514 0.95474 0.85643 1.21154 1.12615 0.93359 1.09103 1.18088 0.86482 0.87367 0.81410 1.45064 1.44561 1.16372 1.25794 1.20529 0.97246 0.91223 0.86392 1.19043 0.93477 1.00293 0.95457 1.20456 0.92504 1.06384 1.01879 1.20760 0.98607 0.95945 0.94005 1.21288 0.95722 1.06371 1.00623 1.19298 0.91702 0.90724 0.88768 1.83982 1.35335 1.59562 1.28716 1.21339 0.89234 1.36962 0.99581 0.88937 1.25318 0.97254 0.96976 0.96842 1.70028 1.14049 1.40882 1.24280 0.85693 0.79340 0.79349 0.78967 1.19756 1.20104 1.19109 1.20066 0.99186 1.02918 0.96516 1.48873 1.34397 1.10319 1.21538 1.78380 1.29388 0.88886 1.21424 1.26177 0.89444 0.98568 0.90545 1.70945 1.30569 0.98124 1.28193 1.22847 0.86983 0.92489 0.85069 1.67735 1.29628 0.98268 1.27722 0.91198 0.91854 0.92599 0.88848 0.89191 0.81654 0.74205 0.89779 0.89858 0.87419 0.87078 0.85271 0.91791 0.86315 0.75531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.77 37.16 0.36 -0.64 16 2 C -0.07 -0.48 6.34 -27.89 -0.18 -0.66 16 3 C 0.27 2.76 6.21 -82.29 -0.51 2.25 16 4 C -0.33 -3.24 8.96 -39.23 -0.35 -3.59 16 5 C 0.49 6.11 7.76 -152.98 -1.19 4.92 16 6 N -0.69 -8.21 5.67 -61.19 -0.35 -8.56 16 7 C 0.17 1.81 5.03 -5.19 -0.03 1.78 16 8 C -0.08 -1.20 5.25 -104.65 -0.55 -1.75 16 9 C -0.19 -2.82 9.70 -39.54 -0.38 -3.20 16 10 C -0.07 -1.22 10.04 -39.61 -0.40 -1.61 16 11 C -0.22 -4.36 9.17 -39.40 -0.36 -4.72 16 12 C 0.15 3.30 6.65 -39.11 -0.26 3.04 16 13 O -0.17 -4.65 9.76 0.03 0.00 -4.65 16 14 C -0.40 -10.49 9.49 30.88 0.29 -10.20 16 15 H 0.09 2.25 5.20 -52.48 -0.27 1.98 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 18 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.17 -3.09 9.64 -39.39 -0.38 -3.47 16 23 N -0.37 -5.31 3.93 -12.98 -0.05 -5.36 16 24 N -0.35 -5.12 12.76 29.26 0.37 -4.75 16 25 C 0.25 3.28 12.98 -91.97 -1.19 2.09 16 26 N -0.54 -8.35 11.26 -15.66 -0.18 -8.52 16 27 C 0.49 7.46 9.00 -323.15 -2.91 4.55 16 28 N -0.51 -6.97 10.00 -10.18 -0.10 -7.08 16 29 H 0.07 0.60 7.95 -51.93 -0.41 0.18 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.38 7.90 -51.93 -0.41 -0.03 16 34 H 0.17 1.12 6.70 -52.49 -0.35 0.77 16 35 H 0.42 5.57 8.57 -40.82 -0.35 5.22 16 36 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 37 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 38 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 43 H 0.23 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -32.74 372.12 -12.09 -44.83 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.01 Total: 7.61 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -8.13 Total: -10.23 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.46 Total: -57.77 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.00 Total: -4.65 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.74 -12.09 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321801111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.362 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds