Wall clock time and date at job start Sat Apr 11 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47395 * 2 1 4 4 C 1.39264 * 119.78290 * 124.72897 * 3 2 1 5 5 C 1.38153 * 119.01504 * 179.70396 * 4 3 2 6 6 N 1.37712 * 120.64427 * 180.26675 * 5 4 3 7 7 C 1.46498 * 119.99984 * 0.33118 * 6 5 4 8 8 C 1.50703 * 109.47024 * 180.02562 * 7 6 5 9 9 C 1.38319 * 119.96660 * 269.72955 * 8 7 6 10 10 C 1.38278 * 120.13333 * 179.77058 * 9 8 7 11 11 C 1.38121 * 120.07367 * 0.50285 * 10 9 8 12 12 C 1.38855 * 119.92691 * 359.75007 * 11 10 9 13 13 O 1.35753 * 120.06915 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99884 * 354.48606 * 13 12 11 15 15 H 1.08004 * 119.99998 * 5.06035 * 14 13 12 16 16 C 1.38645 * 120.00052 * 185.05600 * 14 13 12 17 17 N 1.31553 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47440 * 89.99748 * 18 16 14 20 20 H 1.48504 * 109.47210 * 210.00237 * 18 16 14 21 21 H 1.48505 * 109.46755 * 329.99751 * 18 16 14 22 22 C 1.38081 * 119.96175 * 90.00660 * 8 7 6 23 23 N 1.36512 * 118.70958 * 0.59517 * 5 4 3 24 24 N 1.40069 * 133.37436 * 179.71115 * 23 5 4 25 25 C 1.31066 * 107.03861 * 179.97438 * 24 23 5 26 26 N 1.32725 * 109.62852 * 0.02562 * 25 24 23 27 27 C 1.32858 * 109.73993 * 359.97438 * 26 25 24 28 28 N 1.31647 * 119.78453 * 305.00631 * 3 2 1 29 29 H 1.09000 * 109.47573 * 59.99697 * 1 2 3 30 30 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46741 * 299.99454 * 1 2 3 32 32 H 1.08999 * 109.46653 * 240.00377 * 2 1 3 33 33 H 1.09003 * 109.47330 * 120.00763 * 2 1 3 34 34 H 1.07998 * 120.48936 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99951 * 180.34036 * 6 5 4 36 36 H 1.08996 * 109.47243 * 300.00750 * 7 6 5 37 37 H 1.09001 * 109.46886 * 60.00905 * 7 6 5 38 38 H 1.07996 * 119.93452 * 359.97438 * 9 8 7 39 39 H 1.08008 * 119.96402 * 180.25315 * 10 9 8 40 40 H 1.08002 * 120.03794 * 179.76910 * 11 10 9 41 41 H 0.97005 * 120.00646 * 179.97438 * 17 16 14 42 42 H 1.07998 * 120.03363 * 359.95123 * 22 8 7 43 43 H 1.07997 * 125.18538 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9122 1.8434 0.9934 5 6 3.3676 3.1475 0.9746 6 7 4.2426 3.5994 1.9373 7 6 4.7050 2.6923 2.9906 8 6 5.6466 3.4277 3.9092 9 6 7.0045 3.4339 3.6460 10 6 7.8709 4.1115 4.4839 11 6 7.3838 4.7759 5.5925 12 6 6.0217 4.7672 5.8623 13 8 5.5399 5.4188 6.9514 14 6 6.4454 5.9578 7.7926 15 1 7.4961 5.9319 7.5437 16 6 6.0278 6.5453 8.9769 17 7 4.7481 6.5765 9.2803 18 14 7.2823 7.2927 10.1419 19 1 7.4895 8.7219 9.7958 20 1 6.7856 7.1884 11.5375 21 1 8.5692 6.5619 10.0187 22 6 5.1533 4.0899 5.0159 23 7 2.9281 3.9815 -0.0128 24 7 3.1767 5.3257 -0.3181 25 6 2.4802 5.6110 -1.3911 26 7 1.8072 4.5368 -1.7844 27 6 2.0595 3.5235 -0.9630 28 7 1.6324 2.2558 -0.9359 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 3.2377 1.1602 1.7639 35 1 4.5525 4.5184 1.9180 36 1 3.8492 2.3315 3.5610 37 1 5.2238 1.8464 2.5396 38 1 7.3884 2.9112 2.7824 39 1 8.9303 4.1180 4.2735 40 1 8.0615 5.3019 6.2487 41 1 4.4559 6.9872 10.1091 42 1 4.0934 4.0816 5.2229 43 1 2.4567 6.5737 -1.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321801111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:39 Heat of formation + Delta-G solvation = 114.160044 kcal Electronic energy + Delta-G solvation = -27511.533246 eV Core-core repulsion = 23559.175482 eV Total energy + Delta-G solvation = -3952.357764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.84226 -40.96477 -40.18775 -38.86766 -37.64549 -35.02720 -34.33270 -33.97922 -32.37356 -31.11880 -31.05003 -30.56037 -27.71425 -27.02857 -25.86923 -24.86544 -23.33361 -22.74642 -22.61388 -22.30107 -20.21628 -19.45778 -18.98823 -18.65569 -17.75964 -17.59808 -16.84468 -16.58474 -16.34592 -16.08526 -16.03551 -15.53738 -15.39502 -15.31869 -14.98511 -14.76604 -14.53614 -14.30507 -14.07888 -13.77135 -13.63682 -13.56821 -13.06748 -13.03557 -12.71028 -12.57195 -12.43261 -12.33420 -12.31840 -12.14445 -11.86926 -11.28149 -11.26089 -10.95298 -10.88593 -10.84130 -10.50008 -9.84941 -9.08729 -8.97963 -8.50821 -6.19497 -0.28445 -0.19014 0.22816 0.65120 0.77068 1.33349 1.41600 1.50311 1.59603 1.87885 2.14246 2.43913 2.47197 2.79760 3.11291 3.12823 3.32027 3.60183 3.69670 3.79048 4.03723 4.12258 4.24911 4.32000 4.35051 4.42033 4.46657 4.48256 4.51525 4.64610 4.68061 4.89641 4.93185 4.96347 5.07582 5.15534 5.20206 5.22062 5.25568 5.35570 5.54868 5.55679 5.62868 5.64988 5.67698 5.97116 6.01245 6.12184 6.61972 6.94197 6.96340 7.73484 8.72064 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002212 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.015080 B =12654.231113 C =12960.272354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C 0.263 3.737 4 C -0.310 4.310 5 C 0.474 3.526 6 N -0.694 5.694 7 C 0.171 3.829 8 C -0.066 4.066 9 C -0.165 4.165 10 C -0.074 4.074 11 C -0.234 4.234 12 C 0.108 3.892 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.103 0.897 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.016 2.984 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.251 1.251 22 C -0.177 4.177 23 N -0.373 5.373 24 N -0.378 5.378 25 C 0.257 3.743 26 N -0.576 5.576 27 C 0.466 3.534 28 N -0.534 5.534 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.205 0.795 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -14.099 -16.523 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C 0.107 3.893 4 C -0.342 4.342 5 C 0.248 3.752 6 N -0.320 5.320 7 C 0.050 3.950 8 C -0.067 4.067 9 C -0.183 4.183 10 C -0.092 4.092 11 C -0.253 4.253 12 C 0.058 3.942 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.120 0.880 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.836 3.164 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.175 1.175 22 C -0.197 4.197 23 N -0.160 5.160 24 N -0.209 5.209 25 C -0.045 4.045 26 N -0.312 5.312 27 C 0.106 3.894 28 N -0.258 5.258 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.222 0.778 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -0.459 -13.613 -16.818 21.642 hybrid contribution 0.896 1.762 1.486 2.473 sum 0.438 -11.852 -15.333 19.384 Atomic orbital electron populations 1.21685 0.93840 1.03137 1.01650 1.20806 0.96986 0.86514 1.06440 1.22209 0.85855 0.96560 0.84675 1.21669 1.10863 0.92631 1.09065 1.18499 0.87244 0.87995 0.81447 1.44954 1.44921 1.16099 1.26032 1.20686 0.97383 0.91131 0.85786 1.19404 0.94669 0.98396 0.94216 1.21057 0.91998 1.03629 1.01655 1.21182 1.00818 0.94701 0.92534 1.21400 0.94644 1.07195 1.02065 1.19918 0.93614 0.92062 0.88629 1.83946 1.36420 1.62613 1.30893 1.21799 0.89877 1.37077 1.00143 0.88006 1.26560 0.99408 0.97489 0.98509 1.70173 1.16476 1.43834 1.25328 0.84614 0.76957 0.78550 0.76300 1.19016 1.19643 1.17476 1.20298 0.98678 1.03271 0.97482 1.48940 1.34587 1.10363 1.22073 1.78292 1.30646 0.89539 1.22437 1.26921 0.88202 0.99365 0.89984 1.70907 1.31881 0.99021 1.29358 1.23133 0.87570 0.93156 0.85543 1.67826 1.30557 0.98061 1.29360 0.93522 0.89630 0.93372 0.87600 0.85713 0.77791 0.75220 0.88328 0.85819 0.82966 0.83625 0.86452 0.91834 0.87072 0.71953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.77 71.98 0.70 -0.96 16 2 C -0.07 -0.65 6.34 29.85 0.19 -0.46 16 3 C 0.26 4.70 6.21 42.83 0.27 4.96 16 4 C -0.31 -4.89 8.96 22.50 0.20 -4.68 16 5 C 0.47 10.54 7.76 131.99 1.02 11.56 16 6 N -0.69 -14.41 5.67 -347.50 -1.97 -16.38 16 7 C 0.17 2.87 5.03 85.63 0.43 3.31 16 8 C -0.07 -1.72 5.25 -19.88 -0.10 -1.83 16 9 C -0.16 -4.00 9.70 22.30 0.22 -3.79 16 10 C -0.07 -2.17 10.04 22.25 0.22 -1.95 16 11 C -0.23 -9.23 9.17 22.39 0.21 -9.03 16 12 C 0.11 4.95 6.65 22.58 0.15 5.10 16 13 O -0.23 -13.36 9.76 -22.81 -0.22 -13.58 16 14 C -0.41 -23.19 9.49 67.92 0.64 -22.54 16 15 H 0.10 5.21 5.20 -2.91 -0.02 5.20 16 16 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 17 N -0.92 -55.36 13.67 21.61 0.30 -55.06 16 18 Si 1.02 41.65 29.55 68.60 2.03 43.67 16 19 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 22 C -0.18 -6.57 9.64 22.39 0.22 -6.35 16 23 N -0.37 -10.54 3.93 -194.98 -0.77 -11.30 16 24 N -0.38 -10.97 12.76 -61.36 -0.78 -11.75 16 25 C 0.26 6.57 12.98 180.82 2.35 8.91 16 26 N -0.58 -17.80 11.26 -203.47 -2.29 -20.09 16 27 C 0.47 14.15 9.00 261.61 2.35 16.51 16 28 N -0.53 -14.06 10.00 -186.12 -1.86 -15.92 16 29 H 0.05 0.75 7.95 -2.39 -0.02 0.74 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.12 0.34 7.90 -2.39 -0.02 0.32 16 34 H 0.21 1.47 6.70 -2.91 -0.02 1.45 16 35 H 0.41 10.15 8.57 -92.71 -0.79 9.36 16 36 H 0.10 1.45 7.88 -2.39 -0.02 1.43 16 37 H 0.12 1.19 7.91 -2.39 -0.02 1.17 16 38 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.12 4.82 5.64 -2.91 -0.02 4.80 16 41 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 42 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 43 H 0.26 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -80.57 372.12 4.24 -76.33 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.28 Total: 26.08 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 9.53 Total: -1.99 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -7.37 Total: -130.51 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.22 Total: -13.58 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -80.57 4.24 -76.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321801111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.486 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds