Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47015 * 2 1 4 4 N 1.46905 * 109.46669 * 120.00324 * 2 1 3 5 5 C 1.46902 * 110.99765 * 272.29354 * 4 2 1 6 6 C 1.53004 * 115.55014 * 295.17476 * 5 4 2 7 7 N 1.46500 * 109.46874 * 324.43256 * 6 5 4 8 8 C 1.34777 * 119.99515 * 182.81992 * 7 6 5 9 9 O 1.21273 * 120.00567 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99563 * 180.02562 * 8 7 6 11 11 S 1.81008 * 109.46972 * 180.02562 * 10 8 7 12 12 C 1.76202 * 99.99883 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99685 * 180.02562 * 12 11 10 15 15 N 1.31636 * 120.00081 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99888 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.46973 * 89.99541 * 16 14 12 18 18 H 1.48497 * 109.46788 * 209.99355 * 16 14 12 19 19 H 1.48497 * 109.46886 * 329.99376 * 16 14 12 20 20 C 1.52995 * 117.49837 * 149.50425 * 5 4 2 21 21 C 1.53003 * 117.49626 * 80.84331 * 5 4 2 22 22 C 1.50698 * 109.47111 * 239.99976 * 2 1 3 23 23 N 1.30522 * 126.34651 * 284.97841 * 22 2 1 24 24 N 1.28601 * 109.66842 * 180.02562 * 23 22 2 25 25 C 1.30520 * 109.67627 * 359.97438 * 24 23 22 26 26 N 1.35490 * 107.30685 * 0.02562 * 25 24 23 27 27 C 1.46499 * 126.97996 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.47405 * 179.52657 * 1 2 3 29 29 H 1.09006 * 109.47303 * 299.52267 * 1 2 3 30 30 H 1.09005 * 109.47419 * 59.52440 * 1 2 3 31 31 H 1.00891 * 111.00241 * 36.25304 * 4 2 1 32 32 H 1.08999 * 109.47360 * 84.43801 * 6 5 4 33 33 H 1.09004 * 109.46982 * 204.44067 * 6 5 4 34 34 H 0.96999 * 120.00256 * 2.82399 * 7 6 5 35 35 H 1.08995 * 109.47511 * 300.00210 * 10 8 7 36 36 H 1.09004 * 109.47218 * 60.00389 * 10 8 7 37 37 H 0.97000 * 119.99702 * 180.02562 * 15 14 12 38 38 H 1.09005 * 117.50045 * 359.97438 * 20 5 4 39 39 H 1.08995 * 117.50493 * 145.02041 * 20 5 4 40 40 H 1.09007 * 117.49592 * 214.97733 * 21 5 4 41 41 H 1.08992 * 117.49676 * 359.97438 * 21 5 4 42 42 H 1.07995 * 126.34603 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.46897 * 90.02423 * 27 26 25 44 44 H 1.09004 * 109.47310 * 210.02135 * 27 26 25 45 45 H 1.09000 * 109.47230 * 330.01875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.1432 0.2368 2.3304 6 6 3.1851 1.3448 2.1631 7 7 4.3365 0.8244 1.4216 8 6 5.4088 1.6111 1.2034 9 8 5.4209 2.7496 1.6211 10 6 6.5930 1.0760 0.4402 11 16 7.8611 2.3616 0.3151 12 6 9.0916 1.4899 -0.5964 13 1 8.9187 0.4666 -0.8951 14 6 10.2835 2.1182 -0.9296 15 7 10.4945 3.3654 -0.5651 16 14 11.5878 1.1944 -1.8966 17 1 11.3626 1.3972 -3.3503 18 1 12.9323 1.7058 -1.5279 19 1 11.5052 -0.2542 -1.5802 20 6 1.9335 -0.3293 3.7362 21 6 0.8703 0.5757 3.1087 22 6 2.0323 -0.7104 -1.2304 23 7 2.0340 -1.9999 -1.4327 24 7 2.5350 -2.2560 -2.5891 25 6 2.8752 -1.1415 -3.1772 26 7 2.5661 -0.1289 -2.3317 27 6 2.7683 1.3038 -2.5615 28 1 -0.3634 -1.0276 -0.0085 29 1 -0.3634 0.5064 0.8943 30 1 -0.3634 0.5212 -0.8857 31 1 1.4239 -1.4720 1.4354 32 1 2.7453 2.1772 1.6139 33 1 3.5106 1.6887 3.1449 34 1 4.3270 -0.0863 1.0877 35 1 7.0024 0.2121 0.9636 36 1 6.2767 0.7788 -0.5597 37 1 11.3273 3.8045 -0.7983 38 1 1.7034 -1.3913 3.8220 39 1 2.5374 0.0877 4.5420 40 1 0.7753 1.5879 3.5019 41 1 -0.0588 0.1094 2.7813 42 1 3.3206 -1.0446 -4.1563 43 1 1.8824 1.7238 -3.0378 44 1 2.9401 1.8040 -1.6084 45 1 3.6327 1.4494 -3.2093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323393155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = 50.765949 kcal Electronic energy + Delta-G solvation = -27562.415863 eV Core-core repulsion = 23742.753077 eV Total energy + Delta-G solvation = -3819.662787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.04076 -40.90512 -39.67802 -36.26886 -35.67075 -35.13961 -34.59667 -31.32211 -31.19694 -29.72410 -28.46452 -27.86025 -27.24836 -24.90199 -23.37362 -23.27341 -21.67635 -21.37534 -20.83516 -19.73802 -18.21901 -17.79419 -17.64319 -17.28586 -16.89352 -16.82522 -16.45755 -16.27229 -15.88958 -15.63843 -15.32420 -14.91601 -14.67047 -14.60379 -14.34332 -14.31921 -14.04624 -13.73628 -13.50883 -13.29909 -13.17979 -12.90683 -12.85043 -12.64246 -12.57941 -12.38953 -12.18770 -11.95591 -11.73838 -11.28683 -11.17936 -11.15557 -11.07739 -10.96152 -10.30752 -10.21818 -10.06284 -9.40889 -8.67392 -8.36365 -6.13893 0.88275 1.25262 1.40450 1.44799 1.55691 1.57983 1.59613 1.92049 2.22194 2.26628 2.75959 2.95959 2.97776 3.29994 3.32539 3.59596 3.72500 3.78735 3.84176 3.92735 3.95473 4.04295 4.09723 4.21950 4.31409 4.44397 4.45729 4.47274 4.61473 4.64247 4.66191 4.69980 4.79705 4.85503 5.02462 5.05133 5.13191 5.23766 5.26834 5.40140 5.41287 5.82938 5.98832 6.18167 6.28686 6.51318 7.05434 7.22783 7.79472 8.72591 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.003336 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.321792 B = 8391.510875 C =10064.217174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.098 0.902 4 N -0.643 5.643 5 C 0.031 3.969 6 C 0.166 3.834 7 N -0.703 5.703 8 C 0.535 3.465 9 O -0.562 6.562 10 C -0.128 4.128 11 S -0.134 6.134 12 C -0.550 4.550 13 H 0.076 0.924 14 C 0.019 3.981 15 N -0.908 5.908 16 Si 0.994 3.006 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.160 4.160 21 C -0.186 4.186 22 C 0.185 3.815 23 N -0.317 5.317 24 N -0.347 5.347 25 C 0.153 3.847 26 N -0.471 5.471 27 C 0.063 3.937 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.363 0.637 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.272 0.728 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.249 0.751 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.590 -6.149 0.493 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.067 3.933 3 H 0.116 0.884 4 N -0.275 5.275 5 C -0.061 4.061 6 C 0.041 3.959 7 N -0.357 5.357 8 C 0.320 3.680 9 O -0.440 6.440 10 C -0.280 4.280 11 S 0.093 5.907 12 C -0.698 4.698 13 H 0.095 0.905 14 C -0.186 4.186 15 N -0.545 5.545 16 Si 0.816 3.184 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.198 4.198 21 C -0.225 4.225 22 C -0.084 4.084 23 N -0.157 5.157 24 N -0.186 5.186 25 C -0.135 4.135 26 N -0.161 5.161 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.251 0.749 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.265 0.735 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.011 -5.563 1.222 24.677 hybrid contribution 0.488 -0.580 -1.270 1.479 sum -23.523 -6.143 -0.048 24.312 Atomic orbital electron populations 1.22468 0.92961 1.03358 1.04122 1.19707 0.94388 0.95611 0.83546 0.88388 1.59742 1.56397 1.09503 1.01886 1.21577 0.98128 0.96680 0.89753 1.20840 0.83961 0.94309 0.96746 1.45711 1.15788 1.17069 1.57111 1.19919 0.83513 0.85285 0.79272 1.90686 1.81448 1.19949 1.51959 1.23329 0.97615 1.03805 1.03232 1.85424 1.13194 1.18718 1.73341 1.23180 1.04102 1.01621 1.40885 0.90546 1.26037 0.99999 0.95899 0.96683 1.70163 1.26420 1.12690 1.45182 0.85024 0.76647 0.78434 0.78345 1.19046 1.20117 1.18704 1.23351 1.02141 1.00736 0.93524 1.23774 0.93410 1.02037 1.03325 1.25038 1.00757 0.90689 0.91964 1.74080 1.19125 1.12310 1.10155 1.74169 1.16421 1.24956 1.03011 1.27070 1.03096 0.82966 1.00394 1.46338 1.45202 1.10448 1.14130 1.22421 1.05680 0.74780 1.04964 0.91862 0.89055 0.91574 0.81441 0.91351 0.91164 0.74859 0.88519 0.88304 0.91898 0.87369 0.87933 0.87458 0.86678 0.73524 0.87349 0.89535 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.06 71.98 0.65 -1.16 16 2 C 0.18 2.66 2.90 44.17 0.13 2.79 16 3 H 0.10 1.44 5.44 -2.39 -0.01 1.42 16 4 N -0.64 -9.66 5.30 -452.09 -2.39 -12.06 16 5 C 0.03 0.42 2.10 3.53 0.01 0.43 16 6 C 0.17 3.34 5.03 86.38 0.43 3.77 16 7 N -0.70 -18.11 5.45 -463.05 -2.53 -20.63 16 8 C 0.53 19.34 7.85 87.66 0.69 20.03 16 9 O -0.56 -24.74 15.86 -3.01 -0.05 -24.78 16 10 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 11 S -0.13 -7.32 20.57 -56.49 -1.16 -8.49 16 12 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 13 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16 14 C 0.02 1.08 5.49 84.86 0.47 1.54 16 15 N -0.91 -55.01 13.22 21.65 0.29 -54.72 16 16 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 C -0.16 -1.83 9.94 30.62 0.30 -1.52 16 21 C -0.19 -1.64 9.16 30.62 0.28 -1.36 16 22 C 0.19 3.87 6.87 137.98 0.95 4.82 16 23 N -0.32 -8.69 12.21 -50.15 -0.61 -9.30 16 24 N -0.35 -9.79 12.21 -60.00 -0.73 -10.52 16 25 C 0.15 3.12 12.74 180.11 2.30 5.42 16 26 N -0.47 -8.59 3.15 -542.07 -1.71 -10.30 16 27 C 0.06 0.75 11.00 127.77 1.41 2.16 16 28 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 29 H 0.09 0.65 5.88 -2.38 -0.01 0.64 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.36 5.05 8.31 -89.70 -0.74 4.30 16 32 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 33 H 0.07 1.55 7.91 -2.39 -0.02 1.54 16 34 H 0.41 10.19 7.63 -92.71 -0.71 9.48 16 35 H 0.10 3.75 8.14 -2.40 -0.02 3.73 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 1.26 8.06 -2.39 -0.02 1.24 16 40 H 0.11 0.88 8.14 -2.38 -0.02 0.87 16 41 H 0.12 0.71 6.90 -2.39 -0.02 0.69 16 42 H 0.25 2.94 8.06 -2.91 -0.02 2.91 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 1.15 7.06 -2.38 -0.02 1.13 16 45 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -81.10 390.78 1.41 -79.70 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.42 Total: 24.21 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 8.69 Total: 1.37 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -7.68 Total: -117.54 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.16 Total: -8.49 kcal Total: -81.10 1.41 -79.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323393155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.463 kcal (2) G-P(sol) polarization free energy of solvation -81.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds