Wall clock time and date at job start Sat Apr 11 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47279 * 2 1 4 4 N 1.29416 * 125.70046 * 90.01836 * 3 2 1 5 5 N 1.26397 * 116.47964 * 179.73412 * 4 3 2 6 6 C 1.29416 * 116.47496 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.69447 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47067 * 89.97294 * 7 6 5 9 9 C 1.34775 * 119.99844 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00102 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00099 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00264 * 179.97438 * 11 9 8 13 13 C 1.53036 * 109.46192 * 275.02907 * 12 11 9 14 14 C 1.53190 * 109.31427 * 178.59930 * 13 12 11 15 15 N 1.46926 * 108.76516 * 54.65616 * 14 13 12 16 16 C 1.36926 * 120.63003 * 126.40556 * 15 14 13 17 17 H 1.07999 * 120.00644 * 331.82754 * 16 15 14 18 18 C 1.38820 * 120.00105 * 151.82533 * 16 15 14 19 19 N 1.31622 * 119.99547 * 343.08032 * 18 16 15 20 20 Si 1.86801 * 120.00325 * 163.07936 * 18 16 15 21 21 H 1.48501 * 109.46955 * 60.00062 * 20 18 16 22 22 H 1.48502 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46873 * 299.99922 * 20 18 16 24 24 C 1.46928 * 118.73571 * 306.38469 * 15 14 13 25 25 C 1.53037 * 109.46068 * 154.97418 * 12 11 9 26 26 S 1.71214 * 108.60759 * 359.97438 * 6 5 4 27 27 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47591 * 300.00127 * 1 2 3 29 29 H 1.09008 * 109.47062 * 60.00359 * 1 2 3 30 30 H 1.09004 * 109.47335 * 239.99752 * 2 1 3 31 31 H 1.09008 * 109.47062 * 119.99641 * 2 1 3 32 32 H 1.09002 * 109.46534 * 209.97267 * 7 6 5 33 33 H 1.08999 * 109.47201 * 329.97087 * 7 6 5 34 34 H 0.96998 * 120.00374 * 0.02562 * 8 7 6 35 35 H 0.97002 * 119.99617 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.45638 * 34.99843 * 12 11 9 37 37 H 1.09001 * 109.49669 * 298.56639 * 13 12 11 38 38 H 1.09005 * 109.50023 * 58.66023 * 13 12 11 39 39 H 1.08998 * 109.59693 * 294.86822 * 14 13 12 40 40 H 1.08995 * 109.70564 * 174.50926 * 14 13 12 41 41 H 0.97001 * 119.99649 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58563 * 293.81942 * 24 15 14 43 43 H 1.08997 * 109.70165 * 173.46778 * 24 15 14 44 44 H 1.09001 * 109.49708 * 301.34101 * 25 12 11 45 45 H 1.08992 * 109.49898 * 61.43472 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1327 1.0510 5 7 2.7052 3.3072 0.8484 6 6 2.8368 3.6678 -0.3875 7 6 3.3199 5.0133 -0.8642 8 7 4.7768 4.9835 -1.0155 9 6 5.4333 6.0834 -1.4346 10 8 4.8166 7.1005 -1.6866 11 7 6.7736 6.0558 -1.5743 12 6 7.4873 7.2512 -2.0304 13 6 7.4751 7.2999 -3.5599 14 6 8.1916 8.5688 -4.0323 15 7 9.5352 8.6017 -3.4385 16 6 10.6435 8.7521 -4.2284 17 1 10.6290 8.4050 -5.2510 18 6 11.7858 9.3508 -3.7148 19 7 11.7153 10.0644 -2.6111 20 14 13.4230 9.1436 -4.5901 21 1 13.3204 9.6891 -5.9675 22 1 14.4788 9.8751 -3.8448 23 1 13.7714 7.7015 -4.6535 24 6 9.6667 8.4707 -1.9810 25 6 8.9333 7.2030 -1.5317 26 16 2.3717 2.3605 -1.3905 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.8595 5.2452 -1.8246 33 1 3.0458 5.7767 -0.1360 34 1 5.2688 4.1720 -0.8148 35 1 7.2656 5.2443 -1.3736 36 1 6.9962 8.1403 -1.6349 37 1 7.9880 6.4234 -3.9559 38 1 6.4447 7.3105 -3.9154 39 1 7.6295 9.4464 -3.7131 40 1 8.2725 8.5622 -5.1192 41 1 12.5134 10.4830 -2.2524 42 1 9.2249 9.3403 -1.4946 43 1 10.7205 8.3979 -1.7122 44 1 8.9411 7.1446 -0.4433 45 1 9.4324 6.3275 -1.9469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324663653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:53 Heat of formation + Delta-G solvation = 49.675610 kcal Electronic energy + Delta-G solvation = -26215.192032 eV Core-core repulsion = 22395.481964 eV Total energy + Delta-G solvation = -3819.710067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82312 -40.02702 -37.58365 -35.75653 -34.67528 -34.35032 -32.24070 -31.21291 -30.07987 -29.37119 -28.07981 -25.74841 -24.75652 -23.68815 -22.29724 -21.97491 -20.74009 -20.30211 -19.82166 -19.45363 -18.25806 -17.02860 -16.58952 -15.97677 -15.79623 -15.41925 -15.03520 -14.86539 -14.58955 -14.32772 -14.02555 -13.77241 -13.56574 -13.43798 -13.33475 -13.14650 -12.92929 -12.56248 -12.34039 -12.32245 -11.88061 -11.44940 -11.10720 -10.92068 -10.86171 -10.71124 -10.68434 -10.51908 -10.41705 -10.27214 -10.20006 -10.03928 -10.01021 -9.74872 -9.54375 -9.35430 -8.64348 -8.43760 -6.67451 -5.78787 -3.20929 -0.17162 0.35199 0.84155 1.97792 2.75723 3.27030 3.37729 3.38765 3.44451 3.45381 3.88015 4.23113 4.27293 4.50067 4.51835 4.54296 4.67487 5.02846 5.15186 5.18628 5.24274 5.32341 5.34671 5.42354 5.51780 5.54288 5.61538 5.89891 6.08914 6.14024 6.29161 6.35334 6.48117 6.57599 6.61624 6.79641 6.84557 6.98261 7.06169 7.32993 7.62958 7.79630 8.03490 8.05410 8.45431 8.64968 9.21536 9.84815 10.42066 11.30123 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.001782 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.614106 B =15711.652727 C =15847.848700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C -0.014 4.014 4 N -0.260 5.260 5 N -0.237 5.237 6 C -0.040 4.040 7 C 0.225 3.775 8 N -0.749 5.749 9 C 0.707 3.293 10 O -0.586 6.586 11 N -0.736 5.736 12 C 0.168 3.832 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.175 3.825 25 C -0.146 4.146 26 S 0.194 5.806 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.396 0.604 35 H 0.392 0.608 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.255 0.745 42 H 0.021 0.979 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.814 -21.681 3.739 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.292 4.292 4 N -0.098 5.098 5 N -0.076 5.076 6 C -0.319 4.319 7 C 0.097 3.903 8 N -0.408 5.408 9 C 0.406 3.594 10 O -0.463 6.463 11 N -0.389 5.389 12 C 0.065 3.935 13 C -0.180 4.180 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.048 3.952 25 C -0.186 4.186 26 S 0.438 5.562 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.229 0.771 35 H 0.225 0.775 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.209 -20.512 3.923 29.765 hybrid contribution 1.316 -0.891 -0.025 1.589 sum -19.893 -21.403 3.898 29.480 Atomic orbital electron populations 1.21799 0.92905 1.03136 1.02933 1.20219 0.97120 0.86294 1.05007 1.29440 1.03344 1.04318 0.92085 1.71519 1.12834 0.98771 1.26722 1.71517 1.11867 1.07207 1.16965 1.29209 1.06362 1.03492 0.92871 1.19382 0.80507 0.88169 1.02240 1.45029 1.06392 1.14788 1.74559 1.15884 0.82329 0.83007 0.78132 1.90944 1.66926 1.31047 1.57418 1.45548 1.04748 1.16773 1.71814 1.20953 0.92015 0.86038 0.94514 1.22396 0.99786 1.00813 0.94970 1.20877 0.86837 0.93359 0.96891 1.44078 1.00581 1.84351 1.02491 1.19145 0.90600 1.32444 0.96071 0.91708 1.25057 0.99308 0.97043 0.98236 1.70017 1.28048 1.33550 1.23121 0.86364 0.83683 0.77669 0.79011 1.20880 1.21648 1.21101 1.20740 1.00258 0.90569 0.83632 1.22550 0.93888 1.02958 0.99253 1.83868 1.56438 1.04744 1.11173 0.90818 0.91721 0.92192 0.89024 0.88122 0.88852 0.88030 0.77058 0.77531 0.89927 0.92454 0.92674 0.96132 0.92587 0.93547 0.96042 0.89041 0.92724 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.16 0.37 -0.15 16 2 C -0.05 -0.19 6.54 -27.89 -0.18 -0.37 16 3 C -0.01 -0.10 6.78 -13.30 -0.09 -0.19 16 4 N -0.26 -2.81 11.66 32.58 0.38 -2.43 16 5 N -0.24 -2.73 11.66 32.58 0.38 -2.35 16 6 C -0.04 -0.37 6.90 -13.30 -0.09 -0.46 16 7 C 0.23 2.18 6.27 -5.20 -0.03 2.14 16 8 N -0.75 -7.89 5.55 -66.41 -0.37 -8.26 16 9 C 0.71 10.21 8.53 -86.92 -0.74 9.47 16 10 O -0.59 -10.83 16.01 5.29 0.08 -10.75 16 11 N -0.74 -10.20 5.08 -58.63 -0.30 -10.50 16 12 C 0.17 2.92 2.42 -67.89 -0.16 2.75 16 13 C -0.14 -2.52 5.65 -26.61 -0.15 -2.68 16 14 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 15 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 20 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 25 C -0.15 -2.67 5.55 -26.61 -0.15 -2.81 16 26 S 0.19 1.24 23.04 -107.50 -2.48 -1.24 16 27 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.20 8.14 -51.92 -0.42 -0.23 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.40 3.34 8.48 -40.82 -0.35 2.99 16 35 H 0.39 4.33 8.62 -40.82 -0.35 3.98 16 36 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -33.62 383.64 -9.81 -43.44 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.86 Total: 2.61 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.51 Total: 7.86 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.20 Total: -64.16 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.48 Total: -1.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.62 -9.81 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324663653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.111 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds