Wall clock time and date at job start Sat Apr 11 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47279 * 2 1 4 4 N 1.29416 * 125.70046 * 90.01836 * 3 2 1 5 5 N 1.26397 * 116.47964 * 179.73412 * 4 3 2 6 6 C 1.29416 * 116.47496 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.69447 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47067 * 89.97294 * 7 6 5 9 9 C 1.34775 * 119.99844 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00102 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00099 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00264 * 179.97438 * 11 9 8 13 13 C 1.53036 * 109.46192 * 275.02907 * 12 11 9 14 14 C 1.53190 * 109.31427 * 178.59930 * 13 12 11 15 15 N 1.46926 * 108.76516 * 54.65616 * 14 13 12 16 16 C 1.36926 * 120.63003 * 126.40556 * 15 14 13 17 17 H 1.07999 * 120.00644 * 331.82754 * 16 15 14 18 18 C 1.38820 * 120.00105 * 151.82533 * 16 15 14 19 19 N 1.31622 * 119.99547 * 343.08032 * 18 16 15 20 20 Si 1.86801 * 120.00325 * 163.07936 * 18 16 15 21 21 H 1.48501 * 109.46955 * 60.00062 * 20 18 16 22 22 H 1.48502 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46873 * 299.99922 * 20 18 16 24 24 C 1.46928 * 118.73571 * 306.38469 * 15 14 13 25 25 C 1.53037 * 109.46068 * 154.97418 * 12 11 9 26 26 S 1.71214 * 108.60759 * 359.97438 * 6 5 4 27 27 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47591 * 300.00127 * 1 2 3 29 29 H 1.09008 * 109.47062 * 60.00359 * 1 2 3 30 30 H 1.09004 * 109.47335 * 239.99752 * 2 1 3 31 31 H 1.09008 * 109.47062 * 119.99641 * 2 1 3 32 32 H 1.09002 * 109.46534 * 209.97267 * 7 6 5 33 33 H 1.08999 * 109.47201 * 329.97087 * 7 6 5 34 34 H 0.96998 * 120.00374 * 0.02562 * 8 7 6 35 35 H 0.97002 * 119.99617 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.45638 * 34.99843 * 12 11 9 37 37 H 1.09001 * 109.49669 * 298.56639 * 13 12 11 38 38 H 1.09005 * 109.50023 * 58.66023 * 13 12 11 39 39 H 1.08998 * 109.59693 * 294.86822 * 14 13 12 40 40 H 1.08995 * 109.70564 * 174.50926 * 14 13 12 41 41 H 0.97001 * 119.99649 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58563 * 293.81942 * 24 15 14 43 43 H 1.08997 * 109.70165 * 173.46778 * 24 15 14 44 44 H 1.09001 * 109.49708 * 301.34101 * 25 12 11 45 45 H 1.08992 * 109.49898 * 61.43472 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1327 1.0510 5 7 2.7052 3.3072 0.8484 6 6 2.8368 3.6678 -0.3875 7 6 3.3199 5.0133 -0.8642 8 7 4.7768 4.9835 -1.0155 9 6 5.4333 6.0834 -1.4346 10 8 4.8166 7.1005 -1.6866 11 7 6.7736 6.0558 -1.5743 12 6 7.4873 7.2512 -2.0304 13 6 7.4751 7.2999 -3.5599 14 6 8.1916 8.5688 -4.0323 15 7 9.5352 8.6017 -3.4385 16 6 10.6435 8.7521 -4.2284 17 1 10.6290 8.4050 -5.2510 18 6 11.7858 9.3508 -3.7148 19 7 11.7153 10.0644 -2.6111 20 14 13.4230 9.1436 -4.5901 21 1 13.3204 9.6891 -5.9675 22 1 14.4788 9.8751 -3.8448 23 1 13.7714 7.7015 -4.6535 24 6 9.6667 8.4707 -1.9810 25 6 8.9333 7.2030 -1.5317 26 16 2.3717 2.3605 -1.3905 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.8595 5.2452 -1.8246 33 1 3.0458 5.7767 -0.1360 34 1 5.2688 4.1720 -0.8148 35 1 7.2656 5.2443 -1.3736 36 1 6.9962 8.1403 -1.6349 37 1 7.9880 6.4234 -3.9559 38 1 6.4447 7.3105 -3.9154 39 1 7.6295 9.4464 -3.7131 40 1 8.2725 8.5622 -5.1192 41 1 12.5134 10.4830 -2.2524 42 1 9.2249 9.3403 -1.4946 43 1 10.7205 8.3979 -1.7122 44 1 8.9411 7.1446 -0.4433 45 1 9.4324 6.3275 -1.9469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324663653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:52 Heat of formation + Delta-G solvation = 25.355382 kcal Electronic energy + Delta-G solvation = -26216.246636 eV Core-core repulsion = 22395.481964 eV Total energy + Delta-G solvation = -3820.764672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49851 -41.22212 -39.14796 -36.66079 -35.90966 -35.25044 -33.92377 -32.22602 -31.63765 -30.93870 -28.84956 -26.96744 -26.07949 -24.20949 -23.92059 -23.57510 -21.92697 -21.05757 -20.97659 -20.43625 -19.48091 -18.64323 -17.77332 -16.94620 -16.75607 -16.53050 -16.36918 -15.85876 -15.69129 -15.35604 -15.27763 -15.04607 -14.85986 -14.72574 -14.44233 -14.03964 -14.01601 -13.94163 -13.54015 -13.18679 -12.98146 -12.66264 -12.56398 -12.52934 -12.23175 -12.19090 -12.01979 -11.84750 -11.58888 -11.53561 -11.46213 -11.29050 -11.26674 -10.87103 -10.74312 -10.53880 -10.41786 -9.82301 -8.68997 -7.86179 -5.31745 -0.77039 -0.21177 0.24164 1.25102 1.49920 1.51593 1.58779 1.76048 2.11396 2.53456 2.74806 3.22285 3.31755 3.35069 3.68773 3.73569 3.91838 3.99841 4.08524 4.23803 4.28581 4.36745 4.43448 4.46659 4.49250 4.68134 4.72749 4.82647 4.87586 4.96601 5.03518 5.03624 5.09502 5.18167 5.22198 5.29313 5.32643 5.48792 5.58417 5.66132 5.71076 5.91870 6.40509 7.01836 7.16045 7.41020 7.52914 7.85937 8.38949 9.20766 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.001782 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.614106 B =15711.652727 C =15847.848700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.014 4.014 4 N -0.299 5.299 5 N -0.270 5.270 6 C -0.057 4.057 7 C 0.227 3.773 8 N -0.731 5.731 9 C 0.708 3.292 10 O -0.627 6.627 11 N -0.724 5.724 12 C 0.181 3.819 13 C -0.123 4.123 14 C 0.144 3.856 15 N -0.608 5.608 16 C -0.264 4.264 17 H 0.068 0.932 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.276 1.276 24 C 0.179 3.821 25 C -0.128 4.128 26 S 0.263 5.737 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.409 0.591 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.007 0.993 40 H 0.058 0.942 41 H 0.250 0.750 42 H -0.006 1.006 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.468 -24.788 2.564 32.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.292 4.292 4 N -0.137 5.137 5 N -0.110 5.110 6 C -0.336 4.336 7 C 0.099 3.901 8 N -0.389 5.389 9 C 0.408 3.592 10 O -0.508 6.508 11 N -0.378 5.378 12 C 0.076 3.924 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.394 4.394 17 H 0.086 0.914 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.202 1.202 24 C 0.052 3.948 25 C -0.168 4.168 26 S 0.507 5.493 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.245 0.755 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.012 0.988 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.887 -23.698 2.753 32.376 hybrid contribution 1.402 0.035 0.304 1.435 sum -20.485 -23.664 3.057 31.448 Atomic orbital electron populations 1.21804 0.92350 1.04208 1.02246 1.20462 0.97464 0.84515 1.06433 1.30026 1.01645 1.05379 0.92142 1.71499 1.14709 0.99071 1.28411 1.71480 1.12934 1.08047 1.18491 1.29051 1.07082 1.04121 0.93324 1.19366 0.79739 0.88526 1.02442 1.44808 1.06881 1.14128 1.73120 1.15933 0.82204 0.83192 0.77916 1.90927 1.67761 1.32894 1.59210 1.45125 1.04707 1.16371 1.71635 1.20522 0.91421 0.86584 0.93896 1.22182 0.99615 0.99087 0.95415 1.20980 0.85573 0.94660 0.97022 1.44332 1.01325 1.84608 1.02909 1.19494 0.91540 1.31853 0.96523 0.91406 1.25825 1.02494 0.97047 0.99165 1.70183 1.28489 1.34762 1.24726 0.85320 0.79352 0.77754 0.77871 1.20271 1.22182 1.20154 1.20557 0.99010 0.92132 0.83084 1.22259 0.93772 1.00300 1.00467 1.83588 1.54665 1.02168 1.08851 0.88900 0.93460 0.91824 0.86350 0.87934 0.87717 0.89485 0.75498 0.75414 0.92468 0.91446 0.91973 0.97515 0.92321 0.94065 0.98786 0.91895 0.90729 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 71.98 0.71 0.00 16 2 C -0.05 -0.28 6.54 29.85 0.20 -0.08 16 3 C -0.01 -0.18 6.78 88.46 0.60 0.42 16 4 N -0.30 -6.24 11.66 -50.85 -0.59 -6.83 16 5 N -0.27 -6.10 11.66 -50.85 -0.59 -6.69 16 6 C -0.06 -0.96 6.90 88.46 0.61 -0.35 16 7 C 0.23 4.14 6.27 85.63 0.54 4.68 16 8 N -0.73 -14.10 5.55 -482.30 -2.68 -16.78 16 9 C 0.71 19.39 8.53 179.05 1.53 20.91 16 10 O -0.63 -22.84 16.01 -4.00 -0.06 -22.91 16 11 N -0.72 -18.54 5.08 -457.68 -2.33 -20.87 16 12 C 0.18 6.08 2.42 45.02 0.11 6.19 16 13 C -0.12 -4.29 5.65 30.67 0.17 -4.11 16 14 C 0.14 6.18 6.52 86.36 0.56 6.74 16 15 N -0.61 -30.56 2.99 -699.11 -2.09 -32.65 16 16 C -0.26 -14.42 9.58 84.04 0.81 -13.62 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 18 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 19 N -0.94 -55.22 11.19 21.65 0.24 -54.97 16 20 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.18 8.52 5.30 86.36 0.46 8.98 16 25 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 26 S 0.26 2.68 23.04 -56.49 -1.30 1.37 16 27 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.41 5.89 8.48 -92.71 -0.79 5.10 16 35 H 0.41 7.77 8.62 -92.71 -0.80 6.97 16 36 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -74.76 383.64 -1.06 -75.82 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.56 Total: 15.07 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.88 Total: 23.05 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -8.04 Total: -138.79 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.06 Total: -22.91 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.37 kcal Total: -74.76 -1.06 -75.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324663653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.177 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds