Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47177 * 2 1 4 4 C 1.35631 * 125.67528 * 260.94942 * 3 2 1 5 5 C 1.35523 * 108.85023 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 126.07149 * 180.02562 * 5 4 3 7 7 C 1.39882 * 107.85313 * 359.97438 * 5 4 3 8 8 C 1.37639 * 125.67735 * 80.63291 * 3 2 1 9 9 C 1.46667 * 126.21992 * 0.04132 * 8 3 2 10 10 O 1.21694 * 120.00158 * 5.24364 * 9 8 3 11 11 N 1.34778 * 119.99666 * 185.24208 * 9 8 3 12 12 C 1.46499 * 119.99827 * 185.18405 * 11 9 8 13 13 H 1.09002 * 110.67259 * 34.30841 * 12 11 9 14 14 C 1.54889 * 110.76100 * 271.06590 * 12 11 9 15 15 C 1.54465 * 104.10579 * 203.89364 * 14 12 11 16 16 C 1.53877 * 106.68027 * 23.34561 * 15 14 12 17 17 H 1.09002 * 110.03061 * 240.87288 * 16 15 14 18 18 C 1.52998 * 110.03607 * 119.44470 * 16 15 14 19 19 N 1.46500 * 109.47268 * 67.82561 * 18 16 15 20 20 C 1.36940 * 120.00272 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99469 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.31612 * 119.99744 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00111 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47119 * 90.00080 * 24 22 20 26 26 H 1.48500 * 109.47214 * 210.00201 * 24 22 20 27 27 H 1.48502 * 109.47306 * 330.00333 * 24 22 20 28 28 C 1.54264 * 106.60304 * 0.15745 * 16 15 14 29 29 H 1.08993 * 109.46862 * 60.00256 * 1 2 3 30 30 H 1.08997 * 109.46805 * 299.99852 * 1 2 3 31 31 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47203 * 119.99755 * 2 1 3 33 33 H 1.08993 * 109.47282 * 240.00189 * 2 1 3 34 34 H 1.07998 * 125.57577 * 359.97438 * 4 3 2 35 35 H 1.08001 * 126.45720 * 180.02562 * 7 5 4 36 36 H 0.96994 * 120.00271 * 5.19362 * 11 9 8 37 37 H 1.09003 * 110.48358 * 322.42477 * 14 12 11 38 38 H 1.08998 * 110.48529 * 85.06630 * 14 12 11 39 39 H 1.08991 * 109.86181 * 264.10767 * 15 14 12 40 40 H 1.08996 * 110.16392 * 142.74357 * 15 14 12 41 41 H 1.08995 * 109.47768 * 187.83252 * 18 16 15 42 42 H 1.09005 * 109.46745 * 307.83403 * 18 16 15 43 43 H 0.97004 * 119.99865 * 0.02562 * 19 18 16 44 44 H 0.97008 * 120.00064 * 180.02562 * 23 22 20 45 45 H 1.09006 * 110.48922 * 217.71871 * 28 16 15 46 46 H 1.09001 * 110.60301 * 95.12536 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4454 2.0692 -1.0881 5 6 2.8191 3.3130 -0.7008 6 17 3.4352 4.5637 -1.7351 7 6 2.6192 3.4103 0.6803 8 6 2.1144 2.1987 1.1032 9 6 1.7494 1.8444 2.4788 10 8 1.4055 0.7074 2.7435 11 7 1.7948 2.7780 3.4497 12 6 1.5408 2.3998 4.8421 13 1 1.9174 1.3968 5.0432 14 6 0.0300 2.4949 5.1700 15 6 -0.0113 2.6856 6.7023 16 6 1.3498 3.2758 7.1108 17 1 1.8587 2.6000 7.7980 18 6 1.1521 4.6426 7.7693 19 7 0.4755 4.4709 9.0573 20 6 0.1900 5.5635 9.8318 21 1 0.4632 6.5519 9.4928 22 6 -0.4507 5.4007 11.0524 23 7 -0.7256 6.4509 11.7965 24 14 -0.9238 3.6913 11.6382 25 1 0.1923 3.1122 12.4282 26 1 -2.1388 3.7778 12.4877 27 1 -1.2011 2.8249 10.4645 28 6 2.1714 3.4280 5.8140 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.4818 1.6881 -2.0979 35 1 2.8187 4.2731 1.2984 36 1 1.9955 3.7004 3.2267 37 1 -0.4159 3.3535 4.6680 38 1 -0.4812 1.5760 4.8830 39 1 -0.1629 1.7235 7.1913 40 1 -0.8127 3.3727 6.9739 41 1 2.1224 5.1131 7.9284 42 1 0.5442 5.2737 7.1209 43 1 0.2298 3.5832 9.3615 44 1 -1.1729 6.3372 12.6497 45 1 3.2191 3.1883 5.9957 46 1 2.0756 4.4380 5.4155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332342083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = -16.167687 kcal Electronic energy + Delta-G solvation = -26606.169389 eV Core-core repulsion = 22749.267685 eV Total energy + Delta-G solvation = -3856.901704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.56909 -40.63119 -39.10633 -37.37132 -36.58698 -35.35461 -34.54266 -33.27176 -30.92540 -30.25725 -30.13965 -28.78118 -26.17209 -24.68773 -23.76165 -23.71313 -21.95885 -21.52782 -20.86551 -20.49166 -19.49893 -18.92125 -17.47047 -16.89526 -16.81703 -16.57046 -16.40200 -15.83638 -15.56733 -15.42699 -15.14223 -15.03243 -14.78694 -14.47816 -14.25292 -14.14342 -13.82995 -13.76535 -13.62997 -13.40055 -13.04421 -12.96114 -12.88318 -12.52922 -12.36749 -12.17337 -12.13404 -12.00844 -11.85216 -11.82829 -11.73787 -11.60392 -11.28317 -11.06604 -10.94910 -10.13601 -9.72934 -9.27486 -9.24749 -8.02317 -5.35010 0.33758 1.13875 1.37935 1.41124 1.43682 1.48575 1.71877 2.24984 2.38729 2.48787 3.29193 3.52835 3.53582 3.72223 3.76908 3.81443 3.96202 4.04094 4.08199 4.20645 4.34057 4.36928 4.45044 4.45971 4.50522 4.57283 4.65072 4.73301 4.75973 4.82971 4.93131 4.94822 5.01629 5.12923 5.15135 5.18020 5.23048 5.36498 5.39694 5.49845 5.57844 5.74477 5.77035 6.05474 6.22190 6.49942 7.09317 7.13581 7.86659 8.05314 9.19351 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002065 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.367129 B =13557.586922 C =14672.444495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.403 5.403 4 C 0.047 3.953 5 C -0.142 4.142 6 Cl -0.049 7.049 7 C -0.125 4.125 8 C -0.059 4.059 9 C 0.588 3.412 10 O -0.573 6.573 11 N -0.699 5.699 12 C 0.152 3.848 13 H 0.088 0.912 14 C -0.123 4.123 15 C -0.118 4.118 16 C -0.092 4.092 17 H 0.077 0.923 18 C 0.161 3.839 19 N -0.758 5.758 20 C -0.233 4.233 21 H 0.056 0.944 22 C -0.067 4.067 23 N -0.985 5.985 24 Si 0.955 3.045 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.251 1.251 28 C -0.109 4.109 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.207 0.793 35 H 0.167 0.833 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.366 0.634 44 H 0.257 0.743 45 H 0.088 0.912 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -14.159 -32.750 36.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.076 5.076 4 C -0.091 4.091 5 C -0.175 4.175 6 Cl -0.021 7.021 7 C -0.152 4.152 8 C -0.173 4.173 9 C 0.376 3.624 10 O -0.454 6.454 11 N -0.349 5.349 12 C 0.047 3.953 13 H 0.106 0.894 14 C -0.162 4.162 15 C -0.156 4.156 16 C -0.111 4.111 17 H 0.095 0.905 18 C 0.036 3.964 19 N -0.404 5.404 20 C -0.364 4.364 21 H 0.074 0.926 22 C -0.258 4.258 23 N -0.636 5.636 24 Si 0.782 3.218 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.175 1.175 28 C -0.147 4.147 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.224 0.776 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.199 0.801 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.868 -15.018 -32.561 36.711 hybrid contribution -0.451 0.180 0.861 0.989 sum 7.417 -14.838 -31.700 35.778 Atomic orbital electron populations 1.22029 0.93746 1.03932 1.01895 1.22235 0.96144 0.78052 1.05938 1.44238 1.45539 1.12256 1.05517 1.22242 1.02208 0.91252 0.93414 1.20048 1.13160 0.92212 0.92077 1.98335 1.86370 1.51213 1.66167 1.21473 1.02756 0.96892 0.94049 1.19949 1.15676 0.92882 0.88785 1.17086 0.76785 0.84725 0.83759 1.90790 1.49638 1.21393 1.83591 1.45574 1.71009 1.11990 1.06355 1.21879 0.94911 0.99300 0.79164 0.89370 1.22666 0.96473 1.01739 0.95285 1.22153 0.97264 1.00682 0.95512 1.21820 0.96184 0.96097 0.97005 0.90473 1.20906 0.94743 0.95613 0.85182 1.42751 1.72105 1.04795 1.20765 1.19059 1.30268 0.88209 0.98849 0.92578 1.25528 1.01708 1.01040 0.97545 1.69887 1.49052 1.30576 1.14052 0.85410 0.77428 0.80468 0.78526 1.20369 1.22342 1.17505 1.22518 0.99697 0.99608 0.92914 0.91422 0.94277 0.89092 0.89187 0.85642 0.77600 0.81534 0.74803 0.91171 0.91980 0.91790 0.92586 0.95590 0.95742 0.80118 0.93383 0.89305 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.15 71.98 0.73 -1.18 16 2 C 0.10 1.11 6.10 86.38 0.53 1.63 16 3 N -0.40 -5.90 2.77 -510.87 -1.41 -7.31 16 4 C 0.05 0.55 11.34 83.48 0.95 1.50 16 5 C -0.14 -2.09 6.66 22.04 0.15 -1.95 16 6 Cl -0.05 -0.70 29.30 -2.72 -0.08 -0.78 16 7 C -0.13 -1.92 10.34 22.59 0.23 -1.68 16 8 C -0.06 -1.06 6.88 40.35 0.28 -0.78 16 9 C 0.59 12.31 7.77 86.44 0.67 12.98 16 10 O -0.57 -15.12 13.94 -4.33 -0.06 -15.18 16 11 N -0.70 -12.15 5.17 -440.38 -2.28 -14.42 16 12 C 0.15 3.04 3.18 46.29 0.15 3.18 16 13 H 0.09 1.96 7.70 -2.39 -0.02 1.94 16 14 C -0.12 -2.81 6.53 31.74 0.21 -2.60 16 15 C -0.12 -3.17 6.19 31.39 0.19 -2.98 16 16 C -0.09 -2.46 2.96 -10.07 -0.03 -2.49 16 17 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 18 C 0.16 5.84 5.27 86.38 0.46 6.30 16 19 N -0.76 -35.19 5.19 -343.45 -1.78 -36.97 16 20 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 21 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 23 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 24 Si 0.95 45.79 27.73 68.60 1.90 47.69 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 28 C -0.11 -2.12 5.98 31.67 0.19 -1.93 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.72 7.54 -2.39 -0.02 0.70 16 31 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.09 1.41 6.76 -2.38 -0.02 1.40 16 33 H 0.13 0.57 8.11 -2.39 -0.02 0.55 16 34 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.17 1.90 7.49 -2.91 -0.02 1.88 16 36 H 0.41 5.26 7.49 -92.71 -0.69 4.56 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.77 7.61 -2.39 -0.02 1.76 16 41 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.37 16.21 5.41 -92.70 -0.50 15.71 16 44 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 45 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.09 1.55 7.73 -2.39 -0.02 1.53 16 Total: -1.00 -73.80 387.67 2.38 -71.42 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.26 Total: 25.01 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 6.04 Total: -6.01 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.17 Total: -122.15 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.06 Total: -15.18 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -73.80 2.38 -71.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332342083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.254 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds