Wall clock time and date at job start Sat Apr 11 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 C 1.50703 * 109.47167 * 240.00084 * 2 1 3 5 5 H 1.07997 * 119.99809 * 239.99942 * 4 2 1 6 6 C 1.37872 * 120.00216 * 60.00065 * 4 2 1 7 7 N 1.31522 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46715 * 59.99748 * 8 6 4 10 10 H 1.48494 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46874 * 299.99958 * 8 6 4 12 12 N 1.46898 * 109.47123 * 119.99460 * 2 1 3 13 13 C 1.46895 * 111.00498 * 274.99908 * 12 2 1 14 14 C 1.50700 * 109.47359 * 179.97438 * 13 12 2 15 15 O 1.21273 * 119.99931 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99891 * 180.02562 * 14 13 12 17 17 C 1.38639 * 119.99910 * 185.95148 * 16 14 13 18 18 C 1.39087 * 126.43890 * 29.88188 * 17 16 14 19 19 C 1.43191 * 126.47826 * 0.02562 * 18 17 16 20 20 N 5.81758 * 130.61203 * 124.79545 * 2 1 3 21 21 C 1.41392 * 107.03917 * 180.02562 * 18 17 16 22 22 N 1.30421 * 108.24562 * 0.02562 * 21 18 17 23 23 N 1.35189 * 126.44592 * 209.90621 * 17 16 14 24 24 C 1.40130 * 125.78615 * 359.97438 * 23 17 16 25 25 C 1.38850 * 120.06790 * 319.45340 * 24 23 17 26 26 C 1.38116 * 119.93000 * 179.74786 * 25 24 23 27 27 C 1.38282 * 120.06965 * 0.53101 * 26 25 24 28 28 C 1.38284 * 120.13421 * 359.74525 * 27 26 25 29 29 C 1.38117 * 120.06813 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47329 * 300.00369 * 1 2 3 31 31 H 1.08998 * 109.47099 * 59.99984 * 1 2 3 32 32 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00163 * 179.97438 * 7 6 4 34 34 H 1.00903 * 110.99759 * 151.04542 * 12 2 1 35 35 H 1.09003 * 109.46581 * 60.00039 * 13 12 2 36 36 H 1.08997 * 109.47243 * 300.00374 * 13 12 2 37 37 H 0.96994 * 120.00047 * 5.95322 * 16 14 13 38 38 H 1.08000 * 125.87069 * 180.02562 * 21 18 17 39 39 H 1.08004 * 120.03634 * 0.02562 * 25 24 23 40 40 H 1.08001 * 119.96567 * 180.28203 * 26 25 24 41 41 H 1.07997 * 119.93401 * 179.76202 * 27 26 25 42 42 H 1.08001 * 119.96836 * 179.97438 * 28 27 26 43 43 H 1.07999 * 120.03117 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3214 -1.1204 -4.0080 9 1 1.8258 -2.5203 -4.0076 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5216 3.5560 15 8 2.8677 -1.6984 3.4703 16 7 2.7273 0.1205 4.7327 17 6 3.3066 -0.5288 5.8121 18 6 4.2714 -1.5289 5.7538 19 6 4.8540 -2.0817 4.5683 20 7 5.3168 -2.5202 3.6267 21 6 4.5682 -1.8965 7.0865 22 7 3.8345 -1.1701 7.8834 23 7 3.0396 -0.3092 7.1190 24 6 2.1219 0.6224 7.6226 25 6 2.0202 1.8809 7.0450 26 6 1.1111 2.7951 7.5403 27 6 0.3103 2.4619 8.6173 28 6 0.4133 1.2113 9.1984 29 6 1.3165 0.2908 8.7039 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7088 1.1613 -3.4845 34 1 2.9173 -1.1204 1.0288 35 1 1.0871 0.6164 2.5525 36 1 2.7588 1.0463 2.1182 37 1 2.4228 1.0368 4.8244 38 1 5.2799 -2.6492 7.3918 39 1 2.6482 2.1432 6.2063 40 1 1.0283 3.7726 7.0885 41 1 -0.3971 3.1798 9.0053 42 1 -0.2131 0.9541 10.0397 43 1 1.3961 -0.6859 9.1579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422010537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:45 Heat of formation + Delta-G solvation = 125.904462 kcal Electronic energy + Delta-G solvation = -28128.892160 eV Core-core repulsion = 24177.043672 eV Total energy + Delta-G solvation = -3951.848488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28732 -39.87188 -39.38748 -36.05142 -35.86914 -35.19996 -33.82203 -32.61204 -31.57434 -30.25939 -29.61958 -28.98534 -26.02905 -25.05459 -24.05462 -23.73198 -22.37272 -21.29982 -20.96595 -19.87317 -19.25879 -17.68755 -17.47006 -16.91241 -16.52117 -16.32943 -15.79254 -15.63840 -14.96344 -14.69446 -14.66957 -14.35142 -14.05945 -13.98807 -13.59505 -13.48552 -13.37724 -12.84036 -12.77939 -12.60040 -12.34387 -12.13355 -12.02101 -11.75635 -11.40396 -11.33797 -10.95137 -10.88761 -10.80748 -10.47833 -10.36835 -10.21535 -10.13294 -9.86754 -9.57588 -8.92797 -8.84612 -8.53358 -8.51295 -7.45758 -6.07853 -4.13856 0.35054 0.76839 1.26228 1.53506 1.94421 2.55206 2.64158 3.03867 3.19130 3.31843 3.34991 3.39965 3.82112 4.08665 4.25781 4.33461 4.36893 4.44314 4.55850 4.58181 4.80527 4.84216 5.01019 5.02171 5.15071 5.20900 5.26218 5.41478 5.51946 5.59357 5.65795 5.73334 5.83156 5.93163 6.04697 6.20604 6.58469 6.71557 6.80231 7.00675 7.09716 7.20172 7.35248 7.73213 7.77395 7.87698 8.05846 8.17474 8.24177 8.53317 8.94586 9.52444 10.98617 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002740 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.560638 B =10214.681922 C =11890.625185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.214 3.786 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.672 5.672 13 C 0.052 3.948 14 C 0.512 3.488 15 O -0.467 6.467 16 N -0.660 5.660 17 C 0.379 3.621 18 C -0.177 4.177 19 C 0.292 3.708 20 N -0.414 5.414 21 C 0.120 3.880 22 N -0.279 5.279 23 N -0.329 5.329 24 C 0.149 3.851 25 C -0.137 4.137 26 C -0.092 4.092 27 C -0.118 4.118 28 C -0.098 4.098 29 C -0.102 4.102 30 H 0.003 0.997 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.344 0.656 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.416 0.584 38 H 0.204 0.796 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 6.470 26.618 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.108 3.892 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.306 5.306 13 C -0.081 4.081 14 C 0.299 3.701 15 O -0.334 6.334 16 N -0.313 5.313 17 C 0.154 3.846 18 C -0.195 4.195 19 C -0.022 4.022 20 N -0.093 5.093 21 C -0.070 4.070 22 N -0.096 5.096 23 N -0.108 5.108 24 C 0.059 3.941 25 C -0.158 4.158 26 C -0.111 4.111 27 C -0.136 4.136 28 C -0.116 4.116 29 C -0.122 4.122 30 H 0.022 0.978 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.221 0.779 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.005 5.102 26.235 26.726 hybrid contribution 0.773 0.633 -1.395 1.716 sum 0.768 5.734 24.839 25.504 Atomic orbital electron populations 1.21751 0.97622 0.99672 0.99394 1.19164 0.92751 0.92299 0.85035 0.97856 1.21201 1.31672 1.12732 0.90220 0.92020 1.24892 0.94921 0.94972 0.99058 1.69876 1.36544 1.22881 1.23710 0.86540 0.79180 0.79855 0.81770 1.20081 1.21259 1.20228 1.60571 1.33764 1.31371 1.04853 1.21794 1.01642 0.94969 0.89724 1.21712 0.76985 0.88248 0.83121 1.90775 1.44567 1.15173 1.82843 1.43483 1.61592 1.17339 1.08870 1.18042 0.91620 0.94343 0.80618 1.15484 1.06067 1.07757 0.90168 1.23890 0.92570 0.94084 0.91694 1.81272 1.11422 1.08436 1.08147 1.23999 0.97084 0.97368 0.88566 1.77392 1.09110 1.06120 1.16972 1.45570 1.32437 1.30774 1.01987 1.17460 0.91216 0.87683 0.97791 1.21013 1.01163 0.91550 1.02089 1.21056 0.94613 0.99289 0.96144 1.21338 0.99309 0.96906 0.96045 1.21150 0.97547 0.93185 0.99754 1.21046 0.94467 1.00928 0.95764 0.97801 0.89809 0.94698 0.92800 0.83660 0.88088 0.92363 0.74507 0.77892 0.85515 0.84493 0.85037 0.84755 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.19 37.16 0.34 -2.70 16 2 C 0.21 5.31 2.60 -68.86 -0.18 5.13 16 3 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -14.38 8.59 -34.44 -0.30 -14.68 16 5 H 0.06 1.73 7.62 -52.49 -0.40 1.33 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.67 -14.55 5.93 -109.22 -0.65 -15.20 16 13 C 0.05 0.84 5.97 -4.98 -0.03 0.82 16 14 C 0.51 7.94 7.48 -10.99 -0.08 7.86 16 15 O -0.47 -9.02 11.91 5.56 0.07 -8.95 16 16 N -0.66 -7.63 5.24 -10.98 -0.06 -7.69 16 17 C 0.38 4.64 7.15 -152.95 -1.09 3.55 16 18 C -0.18 -2.32 5.71 -106.46 -0.61 -2.93 16 19 C 0.29 4.79 12.23 -22.44 -0.27 4.51 16 20 N -0.41 -7.92 17.97 41.88 0.75 -7.16 16 21 C 0.12 1.21 11.99 -16.95 -0.20 1.01 16 22 N -0.28 -3.03 12.29 30.88 0.38 -2.65 16 23 N -0.33 -3.58 3.70 -9.42 -0.03 -3.61 16 24 C 0.15 1.35 6.29 -83.61 -0.53 0.83 16 25 C -0.14 -0.97 8.71 -39.40 -0.34 -1.32 16 26 C -0.09 -0.51 10.04 -39.61 -0.40 -0.90 16 27 C -0.12 -0.60 10.04 -39.55 -0.40 -1.00 16 28 C -0.10 -0.57 10.04 -39.61 -0.40 -0.96 16 29 C -0.10 -0.81 9.82 -39.40 -0.39 -1.19 16 30 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 31 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.34 7.90 7.93 -39.29 -0.31 7.59 16 35 H 0.10 1.48 7.44 -51.93 -0.39 1.09 16 36 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 37 H 0.42 3.41 6.03 -40.82 -0.25 3.16 16 38 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -34.55 371.78 -8.17 -42.72 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.87 Total: 5.15 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -4.97 Total: -0.33 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 1.02 Total: -60.74 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.55 -8.17 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422010537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.628 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds