Wall clock time and date at job start Sat Apr 11 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 C 1.50703 * 109.47167 * 240.00084 * 2 1 3 5 5 H 1.07997 * 119.99809 * 239.99942 * 4 2 1 6 6 C 1.37872 * 120.00216 * 60.00065 * 4 2 1 7 7 N 1.31522 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00135 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46715 * 59.99748 * 8 6 4 10 10 H 1.48494 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46874 * 299.99958 * 8 6 4 12 12 N 1.46898 * 109.47123 * 119.99460 * 2 1 3 13 13 C 1.46895 * 111.00498 * 274.99908 * 12 2 1 14 14 C 1.50700 * 109.47359 * 179.97438 * 13 12 2 15 15 O 1.21273 * 119.99931 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99891 * 180.02562 * 14 13 12 17 17 C 1.38639 * 119.99910 * 185.95148 * 16 14 13 18 18 C 1.39087 * 126.43890 * 29.88188 * 17 16 14 19 19 C 1.43191 * 126.47826 * 0.02562 * 18 17 16 20 20 N 5.81758 * 130.61203 * 124.79545 * 2 1 3 21 21 C 1.41392 * 107.03917 * 180.02562 * 18 17 16 22 22 N 1.30421 * 108.24562 * 0.02562 * 21 18 17 23 23 N 1.35189 * 126.44592 * 209.90621 * 17 16 14 24 24 C 1.40130 * 125.78615 * 359.97438 * 23 17 16 25 25 C 1.38850 * 120.06790 * 319.45340 * 24 23 17 26 26 C 1.38116 * 119.93000 * 179.74786 * 25 24 23 27 27 C 1.38282 * 120.06965 * 0.53101 * 26 25 24 28 28 C 1.38284 * 120.13421 * 359.74525 * 27 26 25 29 29 C 1.38117 * 120.06813 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47329 * 300.00369 * 1 2 3 31 31 H 1.08998 * 109.47099 * 59.99984 * 1 2 3 32 32 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00163 * 179.97438 * 7 6 4 34 34 H 1.00903 * 110.99759 * 151.04542 * 12 2 1 35 35 H 1.09003 * 109.46581 * 60.00039 * 13 12 2 36 36 H 1.08997 * 109.47243 * 300.00374 * 13 12 2 37 37 H 0.96994 * 120.00047 * 5.95322 * 16 14 13 38 38 H 1.08000 * 125.87069 * 180.02562 * 21 18 17 39 39 H 1.08004 * 120.03634 * 0.02562 * 25 24 23 40 40 H 1.08001 * 119.96567 * 180.28203 * 26 25 24 41 41 H 1.07997 * 119.93401 * 179.76202 * 27 26 25 42 42 H 1.08001 * 119.96836 * 179.97438 * 28 27 26 43 43 H 1.07999 * 120.03117 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3214 -1.1204 -4.0080 9 1 1.8258 -2.5203 -4.0076 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5216 3.5560 15 8 2.8677 -1.6984 3.4703 16 7 2.7273 0.1205 4.7327 17 6 3.3066 -0.5288 5.8121 18 6 4.2714 -1.5289 5.7538 19 6 4.8540 -2.0817 4.5683 20 7 5.3168 -2.5202 3.6267 21 6 4.5682 -1.8965 7.0865 22 7 3.8345 -1.1701 7.8834 23 7 3.0396 -0.3092 7.1190 24 6 2.1219 0.6224 7.6226 25 6 2.0202 1.8809 7.0450 26 6 1.1111 2.7951 7.5403 27 6 0.3103 2.4619 8.6173 28 6 0.4133 1.2113 9.1984 29 6 1.3165 0.2908 8.7039 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7088 1.1613 -3.4845 34 1 2.9173 -1.1204 1.0288 35 1 1.0871 0.6164 2.5525 36 1 2.7588 1.0463 2.1182 37 1 2.4228 1.0368 4.8244 38 1 5.2799 -2.6492 7.3918 39 1 2.6482 2.1432 6.2063 40 1 1.0283 3.7726 7.0885 41 1 -0.3971 3.1798 9.0053 42 1 -0.2131 0.9541 10.0397 43 1 1.3961 -0.6859 9.1579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422010537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:44 Heat of formation + Delta-G solvation = 103.362186 kcal Electronic energy + Delta-G solvation = -28129.869666 eV Core-core repulsion = 24177.043672 eV Total energy + Delta-G solvation = -3952.825994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.17724 -41.01444 -39.96799 -37.64676 -37.23807 -36.38311 -34.57806 -34.53749 -32.06658 -31.56440 -30.46715 -30.28397 -27.67576 -26.91554 -24.91403 -24.38210 -23.12239 -22.32587 -21.98302 -21.64111 -20.12709 -19.11467 -18.33997 -18.06573 -17.73177 -17.36109 -16.92015 -16.57443 -16.51819 -15.78841 -15.73282 -15.30898 -15.22870 -15.02412 -14.69497 -14.53774 -14.42675 -14.26606 -14.03393 -13.71135 -13.62269 -13.50106 -13.17188 -12.86379 -12.74608 -12.62746 -12.38686 -12.35248 -12.22165 -12.21014 -12.04749 -11.90310 -11.24967 -11.09884 -10.93909 -10.59806 -10.04623 -9.63677 -9.40243 -9.17518 -8.17745 -6.30272 -0.35887 0.29767 0.43379 0.65554 1.08973 1.37888 1.39766 1.41114 1.48964 1.69459 1.87760 2.39180 2.63230 2.66717 3.11083 3.17140 3.31564 3.56887 3.62292 3.78548 3.82611 3.99199 4.15399 4.24273 4.29484 4.34747 4.40661 4.45493 4.49456 4.76428 4.80640 4.99218 5.05723 5.12981 5.15594 5.31354 5.34502 5.41205 5.50198 5.59907 5.61783 5.77070 5.83733 6.00868 6.19919 6.33432 6.34442 6.62329 6.71589 6.84630 6.88716 7.39401 8.87379 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002740 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.560638 B =10214.681922 C =11890.625185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.221 3.779 3 H -0.011 1.011 4 C -0.545 4.545 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.275 1.275 12 N -0.682 5.682 13 C 0.051 3.949 14 C 0.520 3.480 15 O -0.509 6.509 16 N -0.640 5.640 17 C 0.375 3.625 18 C -0.204 4.204 19 C 0.315 3.685 20 N -0.475 5.475 21 C 0.133 3.867 22 N -0.285 5.285 23 N -0.319 5.319 24 C 0.113 3.887 25 C -0.143 4.143 26 C -0.092 4.092 27 C -0.112 4.112 28 C -0.099 4.099 29 C -0.115 4.115 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.333 0.667 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.432 0.568 38 H 0.239 0.761 39 H 0.136 0.864 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 8.194 28.553 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.113 3.887 3 H 0.006 0.994 4 C -0.583 4.583 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.200 1.200 12 N -0.314 5.314 13 C -0.081 4.081 14 C 0.308 3.692 15 O -0.379 6.379 16 N -0.294 5.294 17 C 0.148 3.852 18 C -0.223 4.223 19 C 0.001 3.999 20 N -0.155 5.155 21 C -0.057 4.057 22 N -0.103 5.103 23 N -0.097 5.097 24 C 0.024 3.976 25 C -0.164 4.164 26 C -0.111 4.111 27 C -0.130 4.130 28 C -0.117 4.117 29 C -0.135 4.135 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.275 0.725 38 H 0.255 0.745 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.988 6.883 28.234 29.078 hybrid contribution 0.987 0.225 -1.803 2.068 sum -0.001 7.108 26.431 27.370 Atomic orbital electron populations 1.21575 0.97102 0.98835 0.99832 1.18954 0.93039 0.91207 0.85512 0.99359 1.21510 1.32022 1.12753 0.92040 0.93425 1.25573 0.95075 0.95656 1.01511 1.69962 1.36939 1.23591 1.24389 0.85656 0.78653 0.78701 0.78887 1.20203 1.20171 1.20008 1.60426 1.33186 1.32553 1.05207 1.21869 1.03571 0.94466 0.88227 1.21435 0.76374 0.87533 0.83853 1.90776 1.46601 1.16898 1.83603 1.43050 1.60772 1.17854 1.07743 1.18019 0.91602 0.94294 0.81265 1.15701 1.07424 1.08913 0.90231 1.24321 0.91224 0.92755 0.91560 1.81264 1.13747 1.10634 1.09858 1.24504 0.96912 0.97336 0.86899 1.77395 1.09255 1.06366 1.17247 1.45720 1.32145 1.30634 1.01204 1.17842 0.92124 0.88372 0.99311 1.21218 1.01706 0.91127 1.02323 1.21427 0.93700 0.99921 0.96026 1.21748 0.98998 0.96955 0.95295 1.21458 0.97016 0.93079 1.00188 1.21158 0.95170 1.01369 0.95767 0.94649 0.91992 0.96022 0.92575 0.84953 0.85839 0.90422 0.72478 0.74532 0.84676 0.81975 0.82295 0.82567 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 9.19 71.98 0.66 -4.85 16 2 C 0.22 10.99 2.60 44.17 0.11 11.11 16 3 H -0.01 -0.58 7.80 -2.39 -0.02 -0.60 16 4 C -0.54 -30.69 8.59 25.60 0.22 -30.47 16 5 H 0.05 2.75 7.62 -2.91 -0.02 2.73 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.24 11.32 21.45 0.24 -51.00 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 N -0.68 -29.73 5.93 -499.48 -2.96 -32.69 16 13 C 0.05 1.61 5.97 85.56 0.51 2.12 16 14 C 0.52 15.88 7.48 87.66 0.66 16.53 16 15 O -0.51 -19.97 11.91 -3.01 -0.04 -20.01 16 16 N -0.64 -14.05 5.24 -307.05 -1.61 -15.66 16 17 C 0.38 8.87 7.15 132.32 0.95 9.82 16 18 C -0.20 -5.31 5.71 -21.06 -0.12 -5.43 16 19 C 0.31 10.57 12.23 88.32 1.08 11.65 16 20 N -0.48 -18.93 17.97 19.02 0.34 -18.59 16 21 C 0.13 2.54 11.99 85.68 1.03 3.56 16 22 N -0.29 -5.87 12.29 -56.22 -0.69 -6.56 16 23 N -0.32 -6.58 3.70 -183.72 -0.68 -7.26 16 24 C 0.11 1.88 6.29 38.11 0.24 2.12 16 25 C -0.14 -1.70 8.71 22.39 0.19 -1.50 16 26 C -0.09 -0.70 10.04 22.25 0.22 -0.48 16 27 C -0.11 -0.74 10.04 22.29 0.22 -0.52 16 28 C -0.10 -0.88 10.04 22.25 0.22 -0.65 16 29 C -0.11 -1.64 9.82 22.39 0.22 -1.42 16 30 H 0.03 1.42 7.45 -2.38 -0.02 1.40 16 31 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.27 14.17 8.31 -92.71 -0.77 13.39 16 34 H 0.33 15.76 7.93 -89.69 -0.71 15.05 16 35 H 0.12 3.32 7.44 -2.39 -0.02 3.30 16 36 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 37 H 0.43 6.23 6.03 -92.71 -0.56 5.67 16 38 H 0.24 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.14 1.25 6.30 -2.91 -0.02 1.24 16 40 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 42 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 43 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -76.89 371.78 3.32 -73.57 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.18 Total: 18.44 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.87 Total: 13.26 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -5.36 Total: -131.75 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.04 Total: -20.01 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -76.89 3.32 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422010537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.933 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds