Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50699 * 109.46764 * 119.99805 * 2 1 3 5 5 H 1.08003 * 119.99835 * 120.00722 * 4 2 1 6 6 C 1.37878 * 120.00206 * 300.00014 * 4 2 1 7 7 N 1.31503 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47333 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47293 * 120.00371 * 8 6 4 11 11 H 1.48500 * 109.47060 * 240.00250 * 8 6 4 12 12 N 1.46493 * 109.47394 * 240.00209 * 2 1 3 13 13 C 1.34771 * 120.00376 * 84.99785 * 12 2 1 14 14 O 1.21605 * 119.99931 * 359.97438 * 13 12 2 15 15 N 1.34778 * 120.00305 * 180.02562 * 13 12 2 16 16 C 1.40853 * 120.00011 * 180.02562 * 15 13 12 17 17 C 1.40233 * 126.07500 * 0.02562 * 16 15 13 18 18 N 1.30841 * 108.34095 * 179.70071 * 17 16 15 19 19 N 1.40072 * 108.36054 * 0.44236 * 18 17 16 20 20 C 1.46499 * 126.05662 * 179.81146 * 19 18 17 21 21 C 1.50694 * 109.47404 * 304.69301 * 20 19 18 22 22 C 1.38364 * 119.84468 * 89.99895 * 21 20 19 23 23 C 1.37952 * 120.14850 * 179.69908 * 22 21 20 24 24 C 1.39628 * 119.84862 * 0.27863 * 23 22 21 25 25 C 1.43197 * 120.15234 * 180.02562 * 24 23 22 26 26 N 9.00975 * 118.65601 * 197.86885 * 16 1 2 27 27 C 1.39640 * 119.69807 * 359.97438 * 24 23 22 28 28 C 1.37944 * 119.84566 * 359.97438 * 27 24 23 29 29 C 1.35724 * 126.07083 * 179.97438 * 16 15 13 30 30 H 1.09003 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47495 * 299.99939 * 1 2 3 32 32 H 1.09003 * 109.46867 * 60.00295 * 1 2 3 33 33 H 0.97001 * 120.00460 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99836 * 264.99854 * 12 2 1 35 35 H 0.96997 * 119.99827 * 359.97438 * 15 13 12 36 36 H 1.08001 * 125.82895 * 359.94284 * 17 16 15 37 37 H 1.08996 * 109.47171 * 184.68764 * 20 19 18 38 38 H 1.09001 * 109.46836 * 64.69916 * 20 19 18 39 39 H 1.08002 * 119.92862 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.07526 * 180.25543 * 23 22 21 41 41 H 1.07997 * 120.07565 * 179.97438 * 27 24 23 42 42 H 1.07998 * 119.92827 * 180.02562 * 28 27 24 43 43 H 1.08002 * 126.22483 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1483 -2.2857 3.6038 10 1 3.1470 -0.1858 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8574 1.1615 -2.4118 15 7 2.5960 -0.6537 -3.4576 16 6 2.7310 0.0491 -4.6708 17 6 2.4375 1.4049 -4.8768 18 7 2.6941 1.6964 -6.1262 19 7 3.1505 0.5365 -6.7652 20 6 3.5445 0.4252 -8.1719 21 6 2.4132 0.8957 -9.0492 22 6 2.3342 2.2276 -9.4158 23 6 1.3048 2.6639 -10.2238 24 6 0.3379 1.7593 -10.6669 25 6 -0.7332 2.2051 -11.5063 26 7 -1.5842 2.5541 -12.1727 27 6 0.4208 0.4176 -10.2887 28 6 1.4562 -0.0053 -9.4813 29 6 3.1692 -0.4653 -5.8479 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7086 1.1613 3.4844 34 1 2.2491 -1.6317 -1.1525 35 1 2.8267 -1.5948 -3.4141 36 1 2.0671 2.0920 -4.1305 37 1 3.7755 -0.6146 -8.4032 38 1 4.4250 1.0417 -8.3524 39 1 3.0827 2.9263 -9.0723 40 1 1.2466 3.7030 -10.5126 41 1 -0.3240 -0.2872 -10.6276 42 1 1.5218 -1.0427 -9.1883 43 1 3.4772 -1.4855 -6.0233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477002389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = 112.202904 kcal Electronic energy + Delta-G solvation = -26910.137245 eV Core-core repulsion = 22957.694613 eV Total energy + Delta-G solvation = -3952.442632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23421 -39.95731 -39.10768 -36.94602 -35.26844 -34.39742 -33.71514 -32.34051 -31.60180 -31.12289 -29.49742 -28.27627 -26.52003 -25.24043 -23.31679 -23.15912 -22.17944 -21.15241 -20.38551 -19.70309 -19.39483 -17.92595 -17.39052 -16.44994 -16.21564 -16.06242 -15.48800 -15.10026 -14.93053 -14.81815 -14.49685 -14.32890 -14.15613 -14.01724 -13.83321 -13.35133 -13.27689 -13.21036 -12.73689 -12.61491 -12.56907 -12.37725 -12.07804 -11.76213 -11.55225 -11.09735 -11.02749 -10.78202 -10.66185 -10.40710 -10.25384 -10.22765 -9.50769 -9.37975 -9.36105 -9.28497 -9.03097 -8.56627 -8.03411 -7.38126 -6.12559 -4.21501 0.19275 0.86713 1.86498 2.23540 2.25789 2.70531 2.96703 3.23497 3.28548 3.32601 3.37048 3.41361 3.47371 4.02364 4.06441 4.22757 4.32773 4.38513 4.55914 4.75283 4.80446 4.96496 5.02136 5.04781 5.20282 5.21614 5.29052 5.47721 5.64355 5.71315 5.78294 5.80256 5.99380 6.28664 6.49048 6.81019 6.94501 7.00568 7.06265 7.13796 7.18616 7.26674 7.49688 7.62703 7.77518 7.87620 8.03926 8.16556 8.74936 8.87792 9.28227 9.47611 10.93529 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.001809 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.595039 B =15471.159332 C =16032.078387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.720 5.720 13 C 0.698 3.302 14 O -0.587 6.587 15 N -0.671 5.671 16 C 0.047 3.953 17 C 0.056 3.944 18 N -0.282 5.282 19 N -0.380 5.380 20 C 0.182 3.818 21 C -0.078 4.078 22 C -0.083 4.083 23 C -0.072 4.072 24 C -0.023 4.023 25 C 0.254 3.746 26 N -0.417 5.417 27 C -0.074 4.074 28 C -0.100 4.100 29 C -0.008 4.008 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.401 0.599 36 H 0.209 0.791 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -5.196 -25.105 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.371 5.371 13 C 0.398 3.602 14 O -0.465 6.465 15 N -0.320 5.320 16 C -0.059 4.059 17 C -0.133 4.133 18 N -0.104 5.104 19 N -0.167 5.167 20 C 0.061 3.939 21 C -0.079 4.079 22 C -0.102 4.102 23 C -0.093 4.093 24 C -0.027 4.027 25 C -0.061 4.061 26 N -0.092 5.092 27 C -0.095 4.095 28 C -0.118 4.118 29 C -0.154 4.154 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.235 0.765 36 H 0.225 0.775 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.707 -2.565 -26.911 27.440 hybrid contribution 0.771 -2.293 1.870 3.057 sum 5.477 -4.858 -25.042 26.090 Atomic orbital electron populations 1.22106 0.98559 0.99060 1.00962 1.18678 0.90828 0.93789 0.78849 0.93199 1.21244 1.32393 1.13237 0.90255 0.92048 1.24879 0.94847 0.94982 0.99037 1.69908 1.35840 1.22434 1.23795 0.86389 0.78573 0.79487 0.82590 1.19786 1.20895 1.20909 1.45804 1.68838 1.13274 1.09178 1.16049 0.78666 0.85307 0.80207 1.90746 1.57317 1.14475 1.83990 1.42136 1.70046 1.12804 1.06978 1.17566 1.09066 0.93061 0.86245 1.24667 0.99641 0.95353 0.93596 1.77351 1.19322 1.06237 1.07459 1.48151 1.53968 1.06865 1.07716 1.20458 0.94953 1.03251 0.75248 1.20156 0.96705 0.94266 0.96799 1.21029 0.98196 0.95078 0.95873 1.21200 0.92745 0.99342 0.95990 1.16054 0.92687 0.94519 0.99391 1.25735 0.93202 0.93777 0.93402 1.81269 1.10195 1.07698 1.10007 1.21141 0.98038 0.93756 0.96522 1.20987 0.93604 1.00140 0.97093 1.21672 1.09432 0.95266 0.89017 0.95580 0.89149 0.96503 0.92607 0.78231 0.76530 0.77490 0.87644 0.88824 0.84434 0.84719 0.84830 0.84845 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.28 6.97 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.72 -14.39 5.07 -59.81 -0.30 -14.70 16 13 C 0.70 13.57 8.50 -86.92 -0.74 12.83 16 14 O -0.59 -13.55 13.16 5.27 0.07 -13.48 16 15 N -0.67 -9.68 5.48 -14.39 -0.08 -9.76 16 16 C 0.05 0.66 6.90 -83.86 -0.58 0.08 16 17 C 0.06 0.89 10.84 -17.22 -0.19 0.71 16 18 N -0.28 -3.95 12.40 30.70 0.38 -3.57 16 19 N -0.38 -3.86 3.69 -62.21 -0.23 -4.08 16 20 C 0.18 1.04 6.63 -5.20 -0.03 1.00 16 21 C -0.08 -0.49 5.33 -104.53 -0.56 -1.04 16 22 C -0.08 -0.54 9.68 -39.64 -0.38 -0.92 16 23 C -0.07 -0.47 9.76 -39.17 -0.38 -0.85 16 24 C -0.02 -0.16 5.73 -106.93 -0.61 -0.78 16 25 C 0.25 2.33 15.33 -22.48 -0.34 1.99 16 26 N -0.42 -4.85 18.54 41.83 0.78 -4.07 16 27 C -0.07 -0.45 9.76 -39.17 -0.38 -0.83 16 28 C -0.10 -0.56 9.68 -39.64 -0.38 -0.95 16 29 C -0.01 -0.08 11.52 -16.67 -0.19 -0.27 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 6.51 8.55 -40.82 -0.35 6.16 16 35 H 0.40 4.25 8.84 -40.82 -0.36 3.89 16 36 H 0.21 3.84 5.91 -52.49 -0.31 3.53 16 37 H 0.11 0.27 8.02 -51.93 -0.42 -0.14 16 38 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -34.04 381.70 -8.10 -42.14 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.07 Total: 8.36 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -5.00 Total: 2.04 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 1.17 Total: -60.08 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.07 Total: -13.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.04 -8.10 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477002389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.342 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds