Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50699 * 109.46764 * 119.99805 * 2 1 3 5 5 H 1.08003 * 119.99835 * 120.00722 * 4 2 1 6 6 C 1.37878 * 120.00206 * 300.00014 * 4 2 1 7 7 N 1.31503 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47333 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47293 * 120.00371 * 8 6 4 11 11 H 1.48500 * 109.47060 * 240.00250 * 8 6 4 12 12 N 1.46493 * 109.47394 * 240.00209 * 2 1 3 13 13 C 1.34771 * 120.00376 * 84.99785 * 12 2 1 14 14 O 1.21605 * 119.99931 * 359.97438 * 13 12 2 15 15 N 1.34778 * 120.00305 * 180.02562 * 13 12 2 16 16 C 1.40853 * 120.00011 * 180.02562 * 15 13 12 17 17 C 1.40233 * 126.07500 * 0.02562 * 16 15 13 18 18 N 1.30841 * 108.34095 * 179.70071 * 17 16 15 19 19 N 1.40072 * 108.36054 * 0.44236 * 18 17 16 20 20 C 1.46499 * 126.05662 * 179.81146 * 19 18 17 21 21 C 1.50694 * 109.47404 * 304.69301 * 20 19 18 22 22 C 1.38364 * 119.84468 * 89.99895 * 21 20 19 23 23 C 1.37952 * 120.14850 * 179.69908 * 22 21 20 24 24 C 1.39628 * 119.84862 * 0.27863 * 23 22 21 25 25 C 1.43197 * 120.15234 * 180.02562 * 24 23 22 26 26 N 9.00975 * 118.65601 * 197.86885 * 16 1 2 27 27 C 1.39640 * 119.69807 * 359.97438 * 24 23 22 28 28 C 1.37944 * 119.84566 * 359.97438 * 27 24 23 29 29 C 1.35724 * 126.07083 * 179.97438 * 16 15 13 30 30 H 1.09003 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47495 * 299.99939 * 1 2 3 32 32 H 1.09003 * 109.46867 * 60.00295 * 1 2 3 33 33 H 0.97001 * 120.00460 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99836 * 264.99854 * 12 2 1 35 35 H 0.96997 * 119.99827 * 359.97438 * 15 13 12 36 36 H 1.08001 * 125.82895 * 359.94284 * 17 16 15 37 37 H 1.08996 * 109.47171 * 184.68764 * 20 19 18 38 38 H 1.09001 * 109.46836 * 64.69916 * 20 19 18 39 39 H 1.08002 * 119.92862 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.07526 * 180.25543 * 23 22 21 41 41 H 1.07997 * 120.07565 * 179.97438 * 27 24 23 42 42 H 1.07998 * 119.92827 * 180.02562 * 28 27 24 43 43 H 1.08002 * 126.22483 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1483 -2.2857 3.6038 10 1 3.1470 -0.1858 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8574 1.1615 -2.4118 15 7 2.5960 -0.6537 -3.4576 16 6 2.7310 0.0491 -4.6708 17 6 2.4375 1.4049 -4.8768 18 7 2.6941 1.6964 -6.1262 19 7 3.1505 0.5365 -6.7652 20 6 3.5445 0.4252 -8.1719 21 6 2.4132 0.8957 -9.0492 22 6 2.3342 2.2276 -9.4158 23 6 1.3048 2.6639 -10.2238 24 6 0.3379 1.7593 -10.6669 25 6 -0.7332 2.2051 -11.5063 26 7 -1.5842 2.5541 -12.1727 27 6 0.4208 0.4176 -10.2887 28 6 1.4562 -0.0053 -9.4813 29 6 3.1692 -0.4653 -5.8479 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7086 1.1613 3.4844 34 1 2.2491 -1.6317 -1.1525 35 1 2.8267 -1.5948 -3.4141 36 1 2.0671 2.0920 -4.1305 37 1 3.7755 -0.6146 -8.4032 38 1 4.4250 1.0417 -8.3524 39 1 3.0827 2.9263 -9.0723 40 1 1.2466 3.7030 -10.5126 41 1 -0.3240 -0.2872 -10.6276 42 1 1.5218 -1.0427 -9.1883 43 1 3.4772 -1.4855 -6.0233 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477002389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = 89.567910 kcal Electronic energy + Delta-G solvation = -26911.118772 eV Core-core repulsion = 22957.694613 eV Total energy + Delta-G solvation = -3953.424159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20599 -40.73607 -40.30662 -37.70579 -36.88937 -35.65234 -34.71616 -34.11962 -32.06082 -31.89409 -31.02518 -29.50062 -27.37050 -27.22107 -23.88627 -23.80384 -23.63766 -22.13043 -21.72341 -21.18284 -19.94074 -19.40372 -18.42753 -17.84292 -17.11936 -16.97412 -16.66196 -16.26281 -16.21188 -15.58403 -15.54339 -15.49064 -15.12026 -15.06846 -14.73410 -14.45111 -14.32206 -14.06748 -13.99117 -13.71517 -13.64794 -13.22272 -13.16704 -12.93869 -12.86561 -12.68202 -12.60598 -12.22983 -12.07199 -12.00848 -11.61705 -11.58180 -11.03001 -10.98358 -10.56555 -10.21679 -9.95442 -9.90048 -9.75159 -8.46585 -8.13051 -6.29807 -0.35163 0.41772 0.97235 1.47665 1.48053 1.51139 1.53705 1.60982 1.77527 1.91789 2.15141 2.46436 2.60135 2.79786 2.91092 3.17905 3.55306 3.66753 3.81226 3.96091 4.04835 4.13867 4.34778 4.35654 4.54781 4.64906 4.72071 4.77432 4.81928 4.84016 4.99705 5.06135 5.16369 5.19439 5.31641 5.33142 5.47475 5.52491 5.65988 5.75707 5.83753 5.92886 5.97601 6.15946 6.23832 6.36211 6.39802 6.79285 6.81838 7.38040 7.42575 7.84633 8.93622 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.001809 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.595039 B =15471.159332 C =16032.078387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H -0.001 1.001 4 C -0.542 4.542 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.716 5.716 13 C 0.693 3.307 14 O -0.631 6.631 15 N -0.647 5.647 16 C 0.000 4.000 17 C 0.021 3.979 18 N -0.302 5.302 19 N -0.364 5.364 20 C 0.171 3.829 21 C -0.082 4.082 22 C -0.094 4.094 23 C -0.077 4.077 24 C -0.038 4.038 25 C 0.277 3.723 26 N -0.468 5.468 27 C -0.075 4.075 28 C -0.097 4.097 29 C 0.040 3.960 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.010 0.990 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.162 0.838 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -9.037 -26.459 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.017 0.983 4 C -0.580 4.580 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.181 1.181 10 H -0.212 1.212 11 H -0.206 1.206 12 N -0.369 5.369 13 C 0.393 3.607 14 O -0.512 6.512 15 N -0.298 5.298 16 C -0.105 4.105 17 C -0.165 4.165 18 N -0.125 5.125 19 N -0.150 5.150 20 C 0.052 3.948 21 C -0.084 4.084 22 C -0.112 4.112 23 C -0.097 4.097 24 C -0.042 4.042 25 C -0.037 4.037 26 N -0.144 5.144 27 C -0.095 4.095 28 C -0.115 4.115 29 C -0.108 4.108 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.260 0.740 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.127 0.873 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.180 0.820 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.859 -6.451 -28.348 29.870 hybrid contribution 0.197 -1.075 2.075 2.345 sum 7.055 -7.525 -26.273 28.225 Atomic orbital electron populations 1.21920 0.98575 0.99375 0.99417 1.18215 0.90761 0.91701 0.80824 0.98335 1.21574 1.32337 1.13512 0.90595 0.90609 1.25804 0.94979 0.95628 1.02352 1.70066 1.37122 1.24030 1.24472 0.85279 0.78000 0.78514 0.78394 1.18144 1.21219 1.20621 1.45336 1.69310 1.13908 1.08304 1.16185 0.78649 0.84812 0.81043 1.90749 1.59005 1.16663 1.84826 1.41635 1.68853 1.13526 1.05740 1.17794 1.12703 0.92671 0.87336 1.24200 1.01846 0.96393 0.94090 1.77290 1.20295 1.08163 1.06765 1.48653 1.51332 1.05713 1.09260 1.21034 0.94938 1.06608 0.72248 1.20312 0.97115 0.94148 0.96794 1.21194 0.98287 0.95767 0.95964 1.21326 0.92667 0.99772 0.95959 1.16184 0.92519 0.95485 1.00027 1.26055 0.92700 0.92461 0.92508 1.81281 1.11889 1.09300 1.11892 1.21389 0.98584 0.93319 0.96202 1.21302 0.92682 1.01367 0.96197 1.22428 1.04777 0.96832 0.86766 0.94097 0.91615 0.97068 0.92645 0.76148 0.73996 0.81469 0.82904 0.87344 0.84076 0.84064 0.83378 0.82043 0.75454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.29 14.81 2.56 44.25 0.11 14.93 16 3 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 4 C -0.54 -28.07 8.73 25.60 0.22 -27.85 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.97 41.37 29.54 68.60 2.03 43.39 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 10 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 N -0.72 -28.72 5.07 -461.40 -2.34 -31.06 16 13 C 0.69 27.44 8.50 179.06 1.52 28.97 16 14 O -0.63 -31.00 13.16 -4.05 -0.05 -31.05 16 15 N -0.65 -17.73 5.48 -317.70 -1.74 -19.48 16 16 C 0.00 0.00 6.90 37.59 0.26 0.26 16 17 C 0.02 0.70 10.84 85.33 0.92 1.62 16 18 N -0.30 -8.23 12.40 -56.78 -0.70 -8.93 16 19 N -0.36 -5.97 3.69 -350.73 -1.29 -7.27 16 20 C 0.17 1.08 6.63 85.63 0.57 1.64 16 21 C -0.08 -0.74 5.33 -19.81 -0.11 -0.84 16 22 C -0.09 -1.04 9.68 22.23 0.22 -0.83 16 23 C -0.08 -0.92 9.76 22.54 0.22 -0.70 16 24 C -0.04 -0.51 5.73 -21.36 -0.12 -0.63 16 25 C 0.28 5.07 15.33 88.33 1.35 6.43 16 26 N -0.47 -11.14 18.54 19.00 0.35 -10.79 16 27 C -0.07 -0.72 9.76 22.54 0.22 -0.50 16 28 C -0.10 -0.71 9.68 22.23 0.22 -0.49 16 29 C 0.04 0.61 11.52 83.49 0.96 1.58 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.40 13.04 8.55 -92.71 -0.79 12.25 16 35 H 0.42 7.61 8.84 -92.71 -0.82 6.79 16 36 H 0.17 6.88 5.91 -2.91 -0.02 6.86 16 37 H 0.15 -0.37 8.02 -2.39 -0.02 -0.39 16 38 H 0.11 0.49 8.08 -2.39 -0.02 0.47 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 43 H 0.23 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -80.79 381.70 3.64 -77.15 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.53 Total: 21.70 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.68 Total: 18.56 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -5.49 Total: -129.75 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -80.79 3.64 -77.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477002389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.716 kcal (2) G-P(sol) polarization free energy of solvation -80.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds