Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47274 * 2 1 4 4 N 1.46508 * 109.47090 * 119.99636 * 2 1 3 5 5 C 1.36941 * 119.99750 * 275.00063 * 4 2 1 6 6 H 1.07996 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99753 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46839 * 90.00119 * 9 7 5 11 11 H 1.48491 * 109.47312 * 210.00246 * 9 7 5 12 12 H 1.48497 * 109.46983 * 330.00382 * 9 7 5 13 13 C 1.53000 * 109.47532 * 239.99233 * 2 1 3 14 14 H 1.09004 * 109.58094 * 54.15999 * 13 2 1 15 15 C 1.53192 * 109.58581 * 293.87714 * 13 2 1 16 16 C 1.53044 * 109.30865 * 185.57292 * 15 13 2 17 17 C 1.53041 * 109.53625 * 61.36434 * 16 15 13 18 18 C 1.53187 * 109.31376 * 298.63235 * 17 16 15 19 19 N 1.46924 * 108.89652 * 54.56745 * 18 17 16 20 20 C 1.34770 * 120.63716 * 126.45712 * 19 18 17 21 21 O 1.21699 * 120.00277 * 188.82313 * 20 19 18 22 22 C 1.46672 * 119.99760 * 8.82767 * 20 19 18 23 23 C 1.37892 * 126.22106 * 27.45312 * 22 20 19 24 24 C 1.39892 * 107.09369 * 179.84940 * 23 22 20 25 25 Cl 1.73599 * 126.07778 * 180.12284 * 24 23 22 26 26 C 1.35521 * 107.85010 * 0.42435 * 24 23 22 27 27 N 1.35635 * 108.85200 * 359.73524 * 26 24 23 28 28 C 1.46497 * 125.67724 * 179.97438 * 27 26 24 29 29 H 1.09000 * 109.47406 * 188.40206 * 1 2 3 30 30 H 1.08993 * 109.47612 * 308.40137 * 1 2 3 31 31 H 1.09001 * 109.46866 * 68.40988 * 1 2 3 32 32 H 0.96996 * 120.00296 * 94.99959 * 4 2 1 33 33 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.49786 * 65.62494 * 15 13 2 35 35 H 1.08999 * 109.52244 * 305.53500 * 15 13 2 36 36 H 1.09000 * 109.46334 * 301.34438 * 16 15 13 37 37 H 1.08999 * 109.44893 * 181.37280 * 16 15 13 38 38 H 1.09002 * 109.49737 * 178.68041 * 17 16 15 39 39 H 1.09005 * 109.50015 * 58.58840 * 17 16 15 40 40 H 1.09007 * 109.58599 * 174.42275 * 18 17 16 41 41 H 1.08997 * 109.58812 * 294.70533 * 18 17 16 42 42 H 1.07997 * 126.45819 * 0.02562 * 23 22 20 43 43 H 1.08002 * 125.57774 * 179.72114 * 26 24 23 44 44 H 1.09006 * 109.47026 * 264.76965 * 28 27 26 45 45 H 1.09004 * 109.47334 * 24.76115 * 28 27 26 46 46 H 1.08994 * 109.47338 * 144.76465 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6112 -0.6617 3.5094 8 7 2.9243 -1.9388 3.4503 9 14 2.7903 0.2705 5.1183 10 1 1.5225 0.1803 5.8862 11 1 3.8944 -0.3233 5.9141 12 1 3.0962 1.6954 4.8333 13 6 2.0401 -0.7214 -1.2491 14 1 1.5949 -0.2730 -2.1373 15 6 1.6605 -2.2038 -1.1770 16 6 2.2915 -2.9457 -2.3575 17 6 3.8156 -2.8329 -2.2773 18 6 4.2195 -1.3576 -2.3619 19 7 3.5036 -0.6078 -1.3208 20 6 4.1763 0.1660 -0.4462 21 8 3.5966 0.6531 0.5066 22 6 5.6072 0.4212 -0.6427 23 6 6.2767 0.4222 -1.8482 24 6 7.6172 0.7136 -1.5739 25 17 8.8954 0.8406 -2.7417 26 6 7.7419 0.8725 -0.2339 27 7 6.5271 0.6972 0.3433 28 6 6.2416 0.7862 1.7774 29 1 -0.3634 -1.0166 0.1502 30 1 -0.3634 0.6383 0.8053 31 1 -0.3633 0.3782 -0.9556 32 1 2.2490 -1.6317 1.1528 33 1 3.2476 -2.3960 4.2424 34 1 0.5761 -2.3043 -1.2218 35 1 2.0270 -2.6286 -0.2425 36 1 1.9433 -2.5048 -3.2916 37 1 2.0028 -3.9962 -2.3221 38 1 4.2651 -3.3812 -3.1052 39 1 4.1622 -3.2514 -1.3324 40 1 5.2943 -1.2635 -2.2061 41 1 3.9565 -0.9624 -3.3430 42 1 5.8467 0.2361 -2.8213 43 1 8.6588 1.1011 0.2891 44 1 6.2726 -0.2110 2.2166 45 1 6.9885 1.4182 2.2580 46 1 5.2516 1.2176 1.9247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479828305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = 68.733380 kcal Electronic energy + Delta-G solvation = -29685.714135 eV Core-core repulsion = 25832.494017 eV Total energy + Delta-G solvation = -3853.220118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37131 -39.69922 -36.76588 -36.28281 -35.23021 -33.00960 -32.19421 -31.99883 -29.71371 -28.98017 -28.04100 -26.24997 -25.07614 -23.90075 -23.22612 -21.96223 -20.83290 -20.25132 -19.51980 -18.50154 -17.10814 -16.73004 -15.76772 -15.45134 -15.36717 -14.60978 -14.47665 -14.22870 -14.06963 -13.93496 -13.66258 -13.36739 -13.11278 -13.09427 -12.68129 -12.65666 -12.58782 -12.15572 -12.09520 -11.99078 -11.82428 -11.35956 -11.24020 -11.09533 -10.82320 -10.76459 -10.68125 -10.61724 -10.51856 -10.28271 -10.09304 -9.76947 -9.40019 -8.76578 -8.51129 -8.32661 -8.01379 -7.90233 -6.57883 -5.53973 -2.75066 1.81924 2.23398 2.60318 2.96745 3.48805 3.56324 3.56522 3.64226 3.87065 4.75057 4.84543 4.99892 5.01103 5.09627 5.13362 5.23074 5.35122 5.41998 5.56543 5.61025 5.68427 5.71040 5.74146 5.82370 5.84362 5.96734 5.99051 6.04273 6.13122 6.18103 6.21257 6.30934 6.35525 6.43700 6.49305 6.59304 6.62160 6.91121 6.99556 7.00576 7.08207 7.23126 7.37764 7.93765 7.98033 8.63812 8.93286 9.75652 10.33885 10.70885 11.70337 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.005348 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.801078 B = 5234.250034 C = 7204.586434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.173 3.827 3 H 0.075 0.925 4 N -0.699 5.699 5 C -0.168 4.168 6 H 0.063 0.937 7 C -0.031 4.031 8 N -0.947 5.947 9 Si 0.890 3.110 10 H -0.296 1.296 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.132 4.132 16 C -0.117 4.117 17 C -0.135 4.135 18 C 0.095 3.905 19 N -0.598 5.598 20 C 0.557 3.443 21 O -0.442 6.442 22 C -0.005 4.005 23 C -0.158 4.158 24 C -0.122 4.122 25 Cl -0.063 7.063 26 C 0.014 3.986 27 N -0.395 5.395 28 C 0.063 3.937 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.378 0.622 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 1.836 -14.283 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.093 0.907 4 N -0.341 5.341 5 C -0.300 4.300 6 H 0.081 0.919 7 C -0.224 4.224 8 N -0.600 5.600 9 Si 0.724 3.276 10 H -0.224 1.224 11 H -0.224 1.224 12 H -0.213 1.213 13 C 0.046 3.954 14 H 0.081 0.919 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.173 4.173 18 C -0.028 4.028 19 N -0.334 5.334 20 C 0.342 3.658 21 O -0.312 6.312 22 C -0.122 4.122 23 C -0.184 4.184 24 C -0.155 4.155 25 Cl -0.034 7.034 26 C -0.122 4.122 27 N -0.067 5.067 28 C -0.077 4.077 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.214 0.786 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.170 0.830 43 H 0.188 0.812 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.370 2.308 -13.276 14.905 hybrid contribution 0.534 -0.025 0.837 0.993 sum 6.904 2.283 -12.438 14.408 Atomic orbital electron populations 1.22566 0.99986 1.01148 0.99225 1.20610 0.90267 0.97323 0.85522 0.90732 1.42420 1.77019 1.09612 1.05024 1.19055 1.31576 0.93100 0.86297 0.91888 1.24511 1.04649 0.95971 0.97272 1.69642 1.53909 1.08510 1.27942 0.86394 0.77166 0.78739 0.85314 1.22428 1.22418 1.21269 1.21615 0.78426 0.96009 0.99353 0.91865 1.21982 1.00489 0.95317 0.99300 1.21510 0.95203 1.00237 0.98498 1.21910 0.96580 0.96356 1.02449 1.22127 0.98543 0.91368 0.90736 1.47471 1.06681 1.46679 1.32588 1.17002 0.84069 0.81812 0.82915 1.91203 1.66528 1.47798 1.25637 1.20540 0.92170 1.12039 0.87410 1.21253 0.91559 1.08237 0.97349 1.19832 0.90183 1.15946 0.89577 1.98295 1.49877 1.97372 1.57904 1.21592 0.89543 1.08905 0.92187 1.43881 1.06135 1.48972 1.07715 1.22438 1.05409 1.04453 0.75396 0.93405 0.93002 0.94852 0.78601 0.94338 0.91122 0.90164 0.92423 0.92220 0.91439 0.91301 0.88383 0.92195 0.82959 0.81178 0.89780 0.90210 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.08 37.16 0.34 -2.68 16 2 C 0.17 3.40 1.88 -67.93 -0.13 3.28 16 3 H 0.08 1.63 6.07 -51.93 -0.32 1.31 16 4 N -0.70 -16.75 3.54 -53.42 -0.19 -16.94 16 5 C -0.17 -4.55 7.86 -15.06 -0.12 -4.67 16 6 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 7 C -0.03 -0.88 5.50 -17.43 -0.10 -0.98 16 8 N -0.95 -28.22 13.06 55.49 0.72 -27.50 16 9 Si 0.89 22.52 29.55 -169.99 -5.02 17.50 16 10 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 11 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.15 2.41 2.71 -67.58 -0.18 2.23 16 14 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 15 C -0.13 -2.02 4.87 -26.61 -0.13 -2.15 16 16 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 17 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 18 C 0.10 1.21 5.07 -3.71 -0.02 1.19 16 19 N -0.60 -9.59 2.98 -166.73 -0.50 -10.09 16 20 C 0.56 10.37 7.21 -12.86 -0.09 10.28 16 21 O -0.44 -9.72 7.69 5.19 0.04 -9.68 16 22 C -0.01 -0.09 6.34 -81.98 -0.52 -0.61 16 23 C -0.16 -2.23 8.43 -39.09 -0.33 -2.56 16 24 C -0.12 -1.65 6.66 -39.93 -0.27 -1.92 16 25 Cl -0.06 -0.74 29.30 -51.86 -1.52 -2.26 16 26 C 0.01 0.19 11.35 -16.84 -0.19 0.00 16 27 N -0.40 -6.21 3.16 -120.19 -0.38 -6.59 16 28 C 0.06 1.01 10.77 59.85 0.64 1.65 16 29 H 0.05 0.86 7.17 -51.93 -0.37 0.49 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.38 9.78 5.64 -40.82 -0.23 9.55 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 35 H 0.08 1.52 6.06 -51.93 -0.31 1.20 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.25 4.34 -51.92 -0.23 1.03 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.15 1.85 6.38 -52.49 -0.33 1.52 16 43 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 46 H 0.12 2.23 6.44 -51.93 -0.33 1.90 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -30.55 365.05 -9.44 -39.99 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.69 Total: 10.41 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.41 Total: -0.34 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.34 Total: -61.12 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.04 Total: -9.68 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.52 Total: -2.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.55 -9.44 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479828305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.720 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds