Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47274 * 2 1 4 4 N 1.46508 * 109.47090 * 119.99636 * 2 1 3 5 5 C 1.36941 * 119.99750 * 275.00063 * 4 2 1 6 6 H 1.07996 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99753 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46839 * 90.00119 * 9 7 5 11 11 H 1.48491 * 109.47312 * 210.00246 * 9 7 5 12 12 H 1.48497 * 109.46983 * 330.00382 * 9 7 5 13 13 C 1.53000 * 109.47532 * 239.99233 * 2 1 3 14 14 H 1.09004 * 109.58094 * 54.15999 * 13 2 1 15 15 C 1.53192 * 109.58581 * 293.87714 * 13 2 1 16 16 C 1.53044 * 109.30865 * 185.57292 * 15 13 2 17 17 C 1.53041 * 109.53625 * 61.36434 * 16 15 13 18 18 C 1.53187 * 109.31376 * 298.63235 * 17 16 15 19 19 N 1.46924 * 108.89652 * 54.56745 * 18 17 16 20 20 C 1.34770 * 120.63716 * 126.45712 * 19 18 17 21 21 O 1.21699 * 120.00277 * 188.82313 * 20 19 18 22 22 C 1.46672 * 119.99760 * 8.82767 * 20 19 18 23 23 C 1.37892 * 126.22106 * 27.45312 * 22 20 19 24 24 C 1.39892 * 107.09369 * 179.84940 * 23 22 20 25 25 Cl 1.73599 * 126.07778 * 180.12284 * 24 23 22 26 26 C 1.35521 * 107.85010 * 0.42435 * 24 23 22 27 27 N 1.35635 * 108.85200 * 359.73524 * 26 24 23 28 28 C 1.46497 * 125.67724 * 179.97438 * 27 26 24 29 29 H 1.09000 * 109.47406 * 188.40206 * 1 2 3 30 30 H 1.08993 * 109.47612 * 308.40137 * 1 2 3 31 31 H 1.09001 * 109.46866 * 68.40988 * 1 2 3 32 32 H 0.96996 * 120.00296 * 94.99959 * 4 2 1 33 33 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.49786 * 65.62494 * 15 13 2 35 35 H 1.08999 * 109.52244 * 305.53500 * 15 13 2 36 36 H 1.09000 * 109.46334 * 301.34438 * 16 15 13 37 37 H 1.08999 * 109.44893 * 181.37280 * 16 15 13 38 38 H 1.09002 * 109.49737 * 178.68041 * 17 16 15 39 39 H 1.09005 * 109.50015 * 58.58840 * 17 16 15 40 40 H 1.09007 * 109.58599 * 174.42275 * 18 17 16 41 41 H 1.08997 * 109.58812 * 294.70533 * 18 17 16 42 42 H 1.07997 * 126.45819 * 0.02562 * 23 22 20 43 43 H 1.08002 * 125.57774 * 179.72114 * 26 24 23 44 44 H 1.09006 * 109.47026 * 264.76965 * 28 27 26 45 45 H 1.09004 * 109.47334 * 24.76115 * 28 27 26 46 46 H 1.08994 * 109.47338 * 144.76465 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6112 -0.6617 3.5094 8 7 2.9243 -1.9388 3.4503 9 14 2.7903 0.2705 5.1183 10 1 1.5225 0.1803 5.8862 11 1 3.8944 -0.3233 5.9141 12 1 3.0962 1.6954 4.8333 13 6 2.0401 -0.7214 -1.2491 14 1 1.5949 -0.2730 -2.1373 15 6 1.6605 -2.2038 -1.1770 16 6 2.2915 -2.9457 -2.3575 17 6 3.8156 -2.8329 -2.2773 18 6 4.2195 -1.3576 -2.3619 19 7 3.5036 -0.6078 -1.3208 20 6 4.1763 0.1660 -0.4462 21 8 3.5966 0.6531 0.5066 22 6 5.6072 0.4212 -0.6427 23 6 6.2767 0.4222 -1.8482 24 6 7.6172 0.7136 -1.5739 25 17 8.8954 0.8406 -2.7417 26 6 7.7419 0.8725 -0.2339 27 7 6.5271 0.6972 0.3433 28 6 6.2416 0.7862 1.7774 29 1 -0.3634 -1.0166 0.1502 30 1 -0.3634 0.6383 0.8053 31 1 -0.3633 0.3782 -0.9556 32 1 2.2490 -1.6317 1.1528 33 1 3.2476 -2.3960 4.2424 34 1 0.5761 -2.3043 -1.2218 35 1 2.0270 -2.6286 -0.2425 36 1 1.9433 -2.5048 -3.2916 37 1 2.0028 -3.9962 -2.3221 38 1 4.2651 -3.3812 -3.1052 39 1 4.1622 -3.2514 -1.3324 40 1 5.2943 -1.2635 -2.2061 41 1 3.9565 -0.9624 -3.3430 42 1 5.8467 0.2361 -2.8213 43 1 8.6588 1.1011 0.2891 44 1 6.2726 -0.2110 2.2166 45 1 6.9885 1.4182 2.2580 46 1 5.2516 1.2176 1.9247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479828305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 51.452721 kcal Electronic energy + Delta-G solvation = -29686.463481 eV Core-core repulsion = 25832.494017 eV Total energy + Delta-G solvation = -3853.969464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.54611 -40.99385 -38.05812 -37.29366 -36.84232 -34.31430 -33.95094 -33.20803 -31.28293 -30.20410 -29.62287 -27.46232 -26.34568 -25.67488 -24.65442 -23.19820 -22.07404 -21.41521 -20.84036 -19.78902 -19.02979 -18.00509 -17.10212 -16.69501 -16.66595 -16.30061 -15.86250 -15.63024 -15.44759 -15.23602 -15.00731 -14.63722 -14.47300 -14.29022 -14.10643 -13.86957 -13.77942 -13.68662 -13.41480 -13.30286 -13.09262 -12.97405 -12.79187 -12.58627 -12.35569 -12.30119 -12.11516 -11.93781 -11.72405 -11.67097 -11.47935 -11.31897 -11.18380 -10.77570 -9.86507 -9.57033 -9.34860 -9.09127 -8.53563 -7.71896 -4.89490 0.62051 1.16540 1.42883 1.45583 1.52480 1.52848 1.80393 2.42653 2.56757 2.68203 3.60648 3.63187 3.91177 3.97854 4.00138 4.03210 4.12150 4.16262 4.27360 4.31757 4.34209 4.39465 4.46098 4.61797 4.67465 4.75686 4.79827 4.88521 4.92257 4.95001 4.99220 5.06519 5.12013 5.16748 5.29277 5.33185 5.46963 5.51205 5.59628 5.62479 5.70541 5.84726 5.97943 6.10757 6.49845 6.69486 7.53221 7.61920 8.35763 8.60934 9.53197 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.005348 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.801078 B = 5234.250034 C = 7204.586434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.169 3.831 3 H 0.052 0.948 4 N -0.700 5.700 5 C -0.145 4.145 6 H 0.051 0.949 7 C -0.089 4.089 8 N -0.981 5.981 9 Si 0.944 3.056 10 H -0.300 1.300 11 H -0.301 1.301 12 H -0.280 1.280 13 C 0.152 3.848 14 H 0.096 0.904 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.131 4.131 18 C 0.092 3.908 19 N -0.598 5.598 20 C 0.548 3.452 21 O -0.494 6.494 22 C -0.045 4.045 23 C -0.137 4.137 24 C -0.132 4.132 25 Cl -0.043 7.043 26 C 0.025 3.975 27 N -0.408 5.408 28 C 0.074 3.926 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.368 0.632 33 H 0.238 0.762 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.034 0.966 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.174 0.826 43 H 0.202 0.798 44 H 0.061 0.939 45 H 0.117 0.883 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.604 2.200 -17.529 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.070 0.930 4 N -0.340 5.340 5 C -0.278 4.278 6 H 0.069 0.931 7 C -0.279 4.279 8 N -0.637 5.637 9 Si 0.777 3.223 10 H -0.229 1.229 11 H -0.228 1.228 12 H -0.206 1.206 13 C 0.049 3.951 14 H 0.114 0.886 15 C -0.165 4.165 16 C -0.147 4.147 17 C -0.170 4.170 18 C -0.029 4.029 19 N -0.333 5.333 20 C 0.335 3.665 21 O -0.368 6.368 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.165 4.165 25 Cl -0.015 7.015 26 C -0.111 4.111 27 N -0.080 5.080 28 C -0.067 4.067 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.202 0.798 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.191 0.809 43 H 0.218 0.782 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.289 2.686 -16.601 18.329 hybrid contribution 0.301 -0.079 1.678 1.706 sum 7.589 2.608 -14.923 16.944 Atomic orbital electron populations 1.22407 0.98326 1.00671 1.00517 1.20700 0.91203 0.96310 0.85757 0.92976 1.42492 1.76865 1.09012 1.05632 1.19144 1.28877 0.92377 0.87405 0.93107 1.25012 1.06269 0.96720 0.99853 1.69790 1.56197 1.09765 1.27927 0.85511 0.76509 0.78002 0.82248 1.22882 1.22824 1.20571 1.21585 0.78867 0.96299 0.98363 0.88598 1.21899 1.01110 0.94765 0.98736 1.21488 0.94745 1.00495 0.97984 1.21901 0.96889 0.96197 1.01969 1.22380 0.98214 0.91314 0.91032 1.47611 1.06763 1.46136 1.32741 1.17433 0.85077 0.81370 0.82613 1.91159 1.67737 1.50136 1.27748 1.20458 0.91680 1.15083 0.88741 1.21479 0.91623 1.05962 0.97186 1.19926 0.90545 1.15926 0.90068 1.98304 1.48806 1.97303 1.57060 1.22166 0.89537 1.06871 0.92521 1.43943 1.06976 1.49739 1.07353 1.22203 1.04644 1.03488 0.76369 0.93729 0.95141 0.91038 0.79848 0.95333 0.90279 0.94679 0.89485 0.91394 0.88144 0.94740 0.88550 0.88719 0.80882 0.78158 0.92045 0.86423 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 9.08 71.98 0.65 -4.98 16 2 C 0.17 6.77 1.88 44.99 0.08 6.85 16 3 H 0.05 2.36 6.07 -2.42 -0.01 2.35 16 4 N -0.70 -35.14 3.54 -322.94 -1.14 -36.29 16 5 C -0.14 -8.21 7.86 84.03 0.66 -7.55 16 6 H 0.05 2.96 7.83 -2.91 -0.02 2.94 16 7 C -0.09 -5.26 5.50 84.86 0.47 -4.80 16 8 N -0.98 -61.35 13.06 21.65 0.28 -61.06 16 9 Si 0.94 48.40 29.55 68.60 2.03 50.43 16 10 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 11 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 12 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 13 C 0.15 4.73 2.71 44.97 0.12 4.85 16 14 H 0.10 2.42 8.12 -2.38 -0.02 2.40 16 15 C -0.13 -3.74 4.87 30.67 0.15 -3.59 16 16 C -0.11 -2.36 5.88 30.62 0.18 -2.18 16 17 C -0.13 -2.91 6.08 30.67 0.19 -2.72 16 18 C 0.09 2.09 5.07 86.36 0.44 2.53 16 19 N -0.60 -18.72 2.98 -799.62 -2.38 -21.10 16 20 C 0.55 20.90 7.21 86.45 0.62 21.53 16 21 O -0.49 -22.92 7.69 -4.34 -0.03 -22.95 16 22 C -0.04 -1.49 6.34 40.35 0.26 -1.23 16 23 C -0.14 -3.58 8.43 22.59 0.19 -3.39 16 24 C -0.13 -3.23 6.66 22.04 0.15 -3.08 16 25 Cl -0.04 -0.89 29.30 -2.72 -0.08 -0.97 16 26 C 0.03 0.63 11.35 83.48 0.95 1.58 16 27 N -0.41 -12.79 3.16 -534.16 -1.69 -14.48 16 28 C 0.07 2.44 10.77 127.77 1.38 3.82 16 29 H 0.04 1.59 7.17 -2.39 -0.02 1.57 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 32 H 0.37 20.07 5.64 -92.71 -0.52 19.55 16 33 H 0.24 14.73 8.31 -92.70 -0.77 13.95 16 34 H 0.08 2.17 7.10 -2.39 -0.02 2.15 16 35 H 0.03 1.37 6.06 -2.39 -0.01 1.35 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 2.24 4.34 -2.38 -0.01 2.23 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.17 3.64 6.38 -2.91 -0.02 3.62 16 43 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.12 2.84 8.12 -2.38 -0.02 2.82 16 46 H 0.08 3.26 6.44 -2.39 -0.02 3.24 16 Total: -1.00 -71.40 365.05 3.94 -67.46 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.48 Total: 31.30 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.48 Total: 7.66 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -4.93 Total: -132.93 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.03 Total: -22.95 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -71.40 3.94 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479828305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.914 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds