Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47475 * 2 1 4 4 N 1.28708 * 125.86956 * 270.17117 * 3 2 1 5 5 N 1.28636 * 110.17992 * 180.23646 * 4 3 2 6 6 C 1.33767 * 108.88224 * 359.76357 * 5 4 3 7 7 C 1.35316 * 125.86480 * 89.99820 * 3 2 1 8 8 C 1.50699 * 126.91564 * 0.03925 * 7 3 2 9 9 N 1.46897 * 109.46871 * 274.71131 * 8 7 3 10 10 C 1.48559 * 110.99812 * 290.12192 * 9 8 7 11 11 C 1.54380 * 104.59665 * 200.96279 * 10 9 8 12 12 C 1.54259 * 105.06050 * 23.85174 * 11 10 9 13 13 H 1.08999 * 110.32743 * 241.00121 * 12 11 10 14 14 N 1.46506 * 110.32188 * 118.89481 * 12 11 10 15 15 C 1.34777 * 119.99914 * 86.45915 * 14 12 11 16 16 O 1.21284 * 119.99989 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00043 * 180.02562 * 15 14 12 18 18 S 1.81001 * 109.47155 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00258 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.38790 * 120.00081 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00442 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46800 * 90.00188 * 23 21 19 25 25 H 1.48501 * 109.47366 * 210.00317 * 23 21 19 26 26 H 1.48496 * 109.47247 * 330.00558 * 23 21 19 27 27 C 1.48563 * 111.00099 * 174.70751 * 9 8 7 28 28 H 1.08999 * 109.46941 * 59.99577 * 1 2 3 29 29 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46794 * 299.99886 * 1 2 3 31 31 H 1.09006 * 109.47273 * 240.00136 * 2 1 3 32 32 H 1.08999 * 109.46941 * 120.00423 * 2 1 3 33 33 H 1.08005 * 126.75136 * 180.02562 * 6 5 4 34 34 H 1.08990 * 109.47275 * 154.70479 * 8 7 3 35 35 H 1.09006 * 109.46797 * 34.70212 * 8 7 3 36 36 H 1.09007 * 110.41327 * 82.18432 * 10 9 8 37 37 H 1.09003 * 110.41253 * 319.73995 * 10 9 8 38 38 H 1.09002 * 110.32552 * 264.95869 * 11 10 9 39 39 H 1.09004 * 110.41372 * 142.79496 * 11 10 9 40 40 H 0.96992 * 120.00060 * 266.45371 * 14 12 11 41 41 H 1.08998 * 109.46626 * 299.99259 * 17 15 14 42 42 H 1.08990 * 109.47607 * 59.99679 * 17 15 14 43 43 H 0.96999 * 120.00580 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.41094 * 40.25382 * 27 9 8 45 45 H 1.09004 * 110.40946 * 277.81519 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2669 2.0932 -1.0430 5 7 2.6855 3.2588 -0.6951 6 6 2.7124 3.3283 0.6405 7 6 2.2827 2.1286 1.0966 8 6 2.1347 1.7078 2.5361 9 7 0.7489 1.9280 2.9705 10 6 0.4492 3.3791 3.0788 11 6 -0.7719 3.4549 4.0203 12 6 -0.7170 2.1577 4.8533 13 1 -1.6135 1.5612 4.6846 14 7 -0.5771 2.4730 6.2772 15 6 -1.6726 2.7094 7.0258 16 8 -2.7742 2.6617 6.5206 17 6 -1.5288 3.0342 8.4903 18 16 -3.1668 3.2983 9.2135 19 6 -2.7129 3.6494 10.8794 20 1 -1.6717 3.6516 11.1663 21 6 -3.6933 3.9240 11.8227 22 7 -4.9622 3.9217 11.4729 23 14 -3.2120 4.2955 13.5890 24 1 -3.0006 5.7568 13.7475 25 1 -4.2958 3.8503 14.5015 26 1 -1.9572 3.5748 13.9222 27 6 0.5327 1.4073 4.3450 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.0167 4.1753 1.2375 34 1 2.8085 2.2969 3.1580 35 1 2.3820 0.6506 2.6327 36 1 0.2007 3.7900 2.1001 37 1 1.2964 3.9110 3.5115 38 1 -1.6946 3.4942 3.4413 39 1 -0.6967 4.3262 4.6710 40 1 0.3038 2.5114 6.6811 41 1 -1.0358 2.2060 8.9993 42 1 -0.9313 3.9385 8.6050 43 1 -5.6475 4.1133 12.1322 44 1 1.3931 1.6306 4.9759 45 1 0.3471 0.3334 4.3198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479944958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = 70.307002 kcal Electronic energy + Delta-G solvation = -26396.403553 eV Core-core repulsion = 22577.588130 eV Total energy + Delta-G solvation = -3818.815423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.60962 -40.04320 -38.47738 -35.87299 -34.75780 -32.67013 -32.46196 -31.06592 -30.53931 -29.61884 -28.00143 -25.98176 -25.47704 -24.78528 -22.79674 -22.07360 -21.37344 -20.73932 -20.02229 -17.93029 -17.69922 -16.97292 -16.76515 -16.38006 -16.08513 -15.52778 -15.04109 -14.90370 -14.83018 -14.64558 -14.44513 -14.21157 -13.88157 -13.39407 -13.28090 -13.17954 -12.70558 -12.61559 -12.51637 -12.47937 -12.17889 -11.92098 -11.74669 -11.68033 -11.65087 -11.15317 -11.09481 -11.06076 -10.95595 -10.79343 -10.42772 -9.85475 -9.62959 -9.46027 -9.10958 -9.06586 -8.98914 -8.27962 -6.54084 -6.25065 -3.96048 1.19270 1.99327 2.24219 2.91779 3.00782 3.19649 3.23410 3.27579 3.46818 3.77073 3.84044 4.02219 4.16226 4.17775 4.34318 4.40686 4.45756 4.61167 4.65434 4.81142 4.85816 4.87490 5.02082 5.08094 5.10178 5.10467 5.12263 5.21000 5.25494 5.47672 5.52988 5.56712 5.66690 5.71455 5.81040 5.82340 5.87580 5.95487 6.07837 6.16452 6.25740 6.35813 6.61690 7.55901 7.60594 8.20273 8.31583 8.53617 9.20280 10.82292 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033064 B = 0.001794 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.649372 B =15607.480313 C =15870.247401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 N -0.275 5.275 4 N -0.087 5.087 5 N -0.272 5.272 6 C -0.046 4.046 7 C -0.006 4.006 8 C 0.116 3.884 9 N -0.505 5.505 10 C 0.034 3.966 11 C -0.135 4.135 12 C 0.146 3.854 13 H 0.100 0.900 14 N -0.735 5.735 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.029 3.971 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.055 0.945 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.668 -8.183 -19.670 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 N -0.070 5.070 4 N -0.066 5.066 5 N -0.137 5.137 6 C -0.204 4.204 7 C -0.139 4.139 8 C -0.014 4.014 9 N -0.230 5.230 10 C -0.093 4.093 11 C -0.175 4.175 12 C 0.040 3.960 13 H 0.118 0.882 14 N -0.390 5.390 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.099 4.099 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.202 0.798 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.297 -8.509 -22.428 28.450 hybrid contribution 2.545 0.620 3.648 4.491 sum 17.842 -7.889 -18.780 27.079 Atomic orbital electron populations 1.22187 0.92341 1.03911 1.04595 1.22088 0.97046 0.76412 1.05228 1.47414 1.41798 1.13476 1.04272 1.78308 1.17199 0.99215 1.11894 1.75108 1.15714 1.10499 1.12376 1.23366 1.06863 0.98079 0.92128 1.21897 1.07190 0.93455 0.91397 1.20621 0.90720 1.02183 0.87918 1.65412 1.20914 1.13600 1.23054 1.23186 0.97624 0.88079 1.00452 1.22781 0.98413 0.98456 0.97829 1.21522 0.98578 0.95524 0.80401 0.88208 1.46140 1.09488 1.74182 1.09160 1.20323 0.83973 0.75567 0.88180 1.90713 1.25487 1.49032 1.73450 1.23533 1.08417 1.04385 0.94110 1.85415 0.99515 1.91454 1.06916 1.22857 0.95652 1.55515 0.94422 0.90937 1.24993 0.94471 0.94754 0.99374 1.70011 0.99526 1.45734 1.34953 0.86168 0.78280 0.78697 0.82350 1.20261 1.20730 1.19709 1.23355 0.97189 1.00678 0.88670 0.91676 0.89974 0.89765 0.87890 0.88040 0.79753 0.91176 0.89202 0.89948 0.93205 0.90222 0.90291 0.76933 0.89234 0.89262 0.92149 0.92699 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.11 0.53 6.90 -4.04 -0.03 0.50 16 3 N -0.27 -2.25 3.34 -57.04 -0.19 -2.44 16 4 N -0.09 -0.99 13.16 60.35 0.79 -0.19 16 5 N -0.27 -3.26 12.41 30.23 0.38 -2.88 16 6 C -0.05 -0.41 11.86 -17.74 -0.21 -0.62 16 7 C -0.01 -0.05 6.03 -82.09 -0.49 -0.54 16 8 C 0.12 0.59 5.04 -4.98 -0.03 0.56 16 9 N -0.51 -3.27 5.36 -231.41 -1.24 -4.51 16 10 C 0.03 0.26 5.87 -2.18 -0.01 0.25 16 11 C -0.14 -1.34 6.78 -25.35 -0.17 -1.51 16 12 C 0.15 1.46 3.36 -66.55 -0.22 1.24 16 13 H 0.10 1.23 7.64 -51.93 -0.40 0.83 16 14 N -0.73 -8.47 5.04 -52.46 -0.26 -8.73 16 15 C 0.53 9.19 7.84 -10.99 -0.09 9.11 16 16 O -0.51 -11.01 15.56 5.55 0.09 -10.93 16 17 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 23 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 27 C 0.03 0.19 6.19 -2.18 -0.01 0.18 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.26 7.22 -51.93 -0.37 -0.12 16 33 H 0.19 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 35 H 0.09 0.32 7.30 -51.93 -0.38 -0.06 16 36 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.05 0.33 7.82 -51.93 -0.41 -0.08 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.87 7.95 -51.93 -0.41 0.45 16 40 H 0.40 3.40 8.34 -40.82 -0.34 3.06 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.05 0.28 7.59 -51.93 -0.39 -0.11 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -36.15 389.98 -8.41 -44.57 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.88 Total: -1.18 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.47 Total: -6.75 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.21 Total: -43.83 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.15 -8.41 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479944958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.873 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds