Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30835 * 125.95924 * 2 1 4 4 C 1.33236 * 109.83419 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.53162 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47104 * 14.99729 * 5 4 3 7 7 C 1.53007 * 109.47013 * 255.00159 * 5 4 3 8 8 N 1.46893 * 109.47187 * 135.00430 * 5 4 3 9 9 C 1.47440 * 111.00083 * 183.59742 * 8 5 4 10 10 C 1.54318 * 107.23729 * 123.25622 * 9 8 5 11 11 C 1.55133 * 103.01904 * 22.28104 * 10 9 8 12 12 H 1.09000 * 110.99004 * 82.43988 * 11 10 9 13 13 N 1.46502 * 110.99232 * 206.21765 * 11 10 9 14 14 C 1.34774 * 120.00112 * 273.54838 * 13 11 10 15 15 O 1.21281 * 119.99878 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99771 * 179.97438 * 14 13 11 17 17 S 1.81005 * 109.47200 * 179.97438 * 16 14 13 18 18 C 1.76191 * 100.00071 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00422 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99751 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00146 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00177 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47032 * 90.00194 * 22 20 18 24 24 H 1.48502 * 109.47371 * 210.00470 * 22 20 18 25 25 H 1.48501 * 109.47011 * 330.00061 * 22 20 18 26 26 C 1.47851 * 110.99847 * 304.43406 * 8 5 4 27 27 N 1.30719 * 108.94288 * 0.26563 * 4 3 2 28 28 N 1.34425 * 125.96700 * 180.02562 * 2 1 3 29 29 H 0.96999 * 126.82117 * 359.96797 * 28 2 1 30 30 H 1.08999 * 109.46847 * 90.00190 * 1 2 3 31 31 H 1.09005 * 109.46506 * 209.99372 * 1 2 3 32 32 H 1.08992 * 109.47213 * 329.99569 * 1 2 3 33 33 H 1.09003 * 109.47193 * 294.30610 * 7 5 4 34 34 H 1.08991 * 109.46839 * 174.30508 * 7 5 4 35 35 H 1.08994 * 109.46965 * 54.30488 * 7 5 4 36 36 H 1.09006 * 109.88748 * 242.66087 * 9 8 5 37 37 H 1.08995 * 109.88852 * 3.84399 * 9 8 5 38 38 H 1.08995 * 110.70809 * 140.66896 * 10 9 8 39 39 H 1.08999 * 110.70343 * 263.72494 * 10 9 8 40 40 H 0.97003 * 119.99861 * 93.54973 * 13 11 10 41 41 H 1.08995 * 109.47343 * 299.99791 * 16 14 13 42 42 H 1.09006 * 109.47378 * 60.00248 * 16 14 13 43 43 H 0.96994 * 120.00243 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.37366 * 332.47243 * 26 8 5 45 45 H 1.09006 * 110.36931 * 94.81197 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6890 -0.0006 5 6 4.7372 1.6239 -0.0002 6 1 4.4064 2.6276 0.2665 7 6 5.3684 1.6484 -1.3938 8 7 5.7290 1.1589 0.9785 9 6 6.8628 2.0971 1.0684 10 6 6.9752 2.5386 2.5428 11 6 6.2605 1.3927 3.3062 12 1 6.9330 0.5492 3.4630 13 7 5.7162 1.8701 4.5798 14 6 6.4925 1.8843 5.6814 15 8 7.6415 1.5015 5.6185 16 6 5.9326 2.3759 6.9913 17 16 7.2092 2.2715 8.2702 18 6 6.3084 2.8889 9.6529 19 1 5.2780 3.1904 9.5351 20 6 6.9230 2.9879 10.8934 21 7 6.2499 3.4487 11.9266 22 14 8.7049 2.4658 11.0973 23 1 9.5934 3.6277 10.8414 24 1 8.9211 1.9727 12.4813 25 1 9.0167 1.3819 10.1314 26 6 5.1246 1.0210 2.3207 27 7 3.6195 -0.6166 -0.0067 28 7 2.2965 -1.0880 -0.0005 29 1 2.0095 -2.0145 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.7894 0.6686 -1.6192 34 1 6.1587 2.3985 -1.4214 35 1 4.6068 1.8955 -2.1333 36 1 7.7818 1.5990 0.7594 37 1 6.6775 2.9644 0.4347 38 1 8.0199 2.6103 2.8451 39 1 6.4638 3.4881 2.7008 40 1 4.7970 2.1759 4.6301 41 1 5.6103 3.4115 6.8829 42 1 5.0811 1.7584 7.2772 43 1 6.6792 3.5175 12.7936 44 1 4.2859 1.7082 2.4317 45 1 4.7992 -0.0061 2.4866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481698298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 54.661086 kcal Electronic energy + Delta-G solvation = -26461.899071 eV Core-core repulsion = 22642.405190 eV Total energy + Delta-G solvation = -3819.493881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.56460 -40.02150 -38.62667 -35.30062 -33.52428 -32.75562 -32.43518 -31.93318 -29.70515 -29.60424 -28.35217 -27.30218 -25.59864 -24.66562 -22.11620 -21.48089 -21.15830 -20.53590 -19.76012 -18.33472 -17.88290 -16.86022 -16.64133 -16.02570 -15.95878 -15.36649 -15.00191 -14.93068 -14.58952 -14.31620 -14.13254 -13.74140 -13.69793 -13.47132 -13.37141 -13.28215 -12.79284 -12.73495 -12.41916 -12.30801 -12.10523 -11.96957 -11.67485 -11.63914 -11.52477 -11.25795 -11.00469 -10.91691 -10.59569 -10.45700 -10.40443 -9.85496 -9.81408 -9.53425 -9.02161 -8.96987 -8.66208 -8.49710 -6.91372 -6.28607 -4.00265 1.21547 2.24594 2.43475 2.73542 2.96149 3.18736 3.33444 3.38421 3.51182 3.59588 3.86511 4.14955 4.31691 4.33855 4.37608 4.52634 4.73063 4.76080 4.84022 4.86511 4.93669 5.00548 5.08441 5.10429 5.16559 5.24025 5.24792 5.34054 5.35987 5.53524 5.65349 5.70834 5.76329 5.83808 5.86050 5.95639 6.01097 6.02206 6.05329 6.46391 6.58802 6.64893 6.70889 7.60185 7.73977 7.94489 8.41943 8.49027 9.17565 10.80627 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002128 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.229081 B =13156.682646 C =14191.203727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.280 3.720 3 N -0.539 5.539 4 C 0.232 3.768 5 C 0.172 3.828 6 H 0.071 0.929 7 C -0.140 4.140 8 N -0.513 5.513 9 C 0.045 3.955 10 C -0.155 4.155 11 C 0.142 3.858 12 H 0.103 0.897 13 N -0.729 5.729 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.042 3.958 27 N -0.282 5.282 28 N -0.486 5.486 29 H 0.440 0.560 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.051 0.949 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 -6.058 -29.864 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.269 5.269 4 C -0.051 4.051 5 C 0.061 3.939 6 H 0.089 0.911 7 C -0.198 4.198 8 N -0.238 5.238 9 C -0.083 4.083 10 C -0.194 4.194 11 C 0.036 3.964 12 H 0.121 0.879 13 N -0.383 5.383 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.087 4.087 27 N -0.110 5.110 28 N -0.204 5.204 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.458 -7.157 -29.951 31.935 hybrid contribution -1.929 0.607 0.764 2.162 sum -10.387 -6.549 -29.188 31.666 Atomic orbital electron populations 1.20404 0.83613 1.05175 1.04545 1.24387 0.96627 0.82888 0.95917 1.70342 1.01287 1.29672 1.25620 1.23928 0.92573 0.90235 0.98382 1.20018 0.86014 0.93098 0.94752 0.91077 1.21845 1.00803 1.03597 0.93598 1.63622 1.07770 1.46698 1.05734 1.22849 0.94645 0.94527 0.96237 1.23205 1.02910 0.98787 0.94523 1.21948 0.94949 0.97034 0.82465 0.87883 1.45891 1.15912 1.68033 1.08464 1.20279 0.85956 0.77268 0.84586 1.90700 1.17408 1.45734 1.85199 1.23281 1.04339 1.04568 0.95294 1.84786 1.18024 1.85813 1.02819 1.22318 1.01483 1.49216 0.93872 0.89403 1.24720 0.98481 0.93548 0.94606 1.69938 1.37187 1.43969 1.00624 0.86729 0.84667 0.81267 0.79161 1.19195 1.19946 1.15908 1.23182 0.95856 1.02053 0.87579 1.78179 0.95572 1.12221 1.25059 1.48153 1.04660 1.10091 1.57535 0.71459 0.88999 0.89781 0.88280 0.90946 0.91226 0.91870 0.89554 0.91934 0.89660 0.90963 0.76719 0.88503 0.88485 0.91944 0.93030 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.28 2.10 8.24 -155.70 -1.28 0.81 16 3 N -0.54 -5.64 11.19 -8.16 -0.09 -5.73 16 4 C 0.23 2.49 5.80 -156.85 -0.91 1.58 16 5 C 0.17 1.62 2.17 -68.87 -0.15 1.47 16 6 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 7 C -0.14 -1.08 9.01 37.16 0.33 -0.74 16 8 N -0.51 -5.14 5.01 -224.68 -1.13 -6.27 16 9 C 0.05 0.40 6.23 -2.84 -0.02 0.38 16 10 C -0.15 -1.67 6.64 -24.91 -0.17 -1.84 16 11 C 0.14 1.74 3.31 -65.79 -0.22 1.52 16 12 H 0.10 1.48 7.73 -51.93 -0.40 1.08 16 13 N -0.73 -9.65 5.23 -51.74 -0.27 -9.92 16 14 C 0.53 9.55 7.85 -10.99 -0.09 9.47 16 15 O -0.52 -11.17 15.61 5.56 0.09 -11.08 16 16 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 18 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 22 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C 0.04 0.45 5.37 -2.29 -0.01 0.43 16 27 N -0.28 -3.07 12.78 32.42 0.41 -2.66 16 28 N -0.49 -3.63 7.45 32.62 0.24 -3.38 16 29 H 0.44 1.74 8.96 -182.34 -1.63 0.10 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.43 6.89 -51.93 -0.36 0.08 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.46 6.58 -51.93 -0.34 0.12 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 4.25 8.52 -40.82 -0.35 3.91 16 41 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.10 1.77 8.14 -51.91 -0.42 1.34 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.05 0.54 7.59 -51.93 -0.39 0.15 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -36.99 385.58 -10.68 -47.67 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.13 Total: 0.89 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.69 Total: -1.05 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.06 Total: -53.87 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.99 -10.68 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481698298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.331 kcal (2) G-P(sol) polarization free energy of solvation -36.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds