Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30835 * 125.95924 * 2 1 4 4 C 1.33236 * 109.83419 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.53162 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47104 * 14.99729 * 5 4 3 7 7 C 1.53007 * 109.47013 * 255.00159 * 5 4 3 8 8 N 1.46893 * 109.47187 * 135.00430 * 5 4 3 9 9 C 1.47440 * 111.00083 * 183.59742 * 8 5 4 10 10 C 1.54318 * 107.23729 * 123.25622 * 9 8 5 11 11 C 1.55133 * 103.01904 * 22.28104 * 10 9 8 12 12 H 1.09000 * 110.99004 * 82.43988 * 11 10 9 13 13 N 1.46502 * 110.99232 * 206.21765 * 11 10 9 14 14 C 1.34774 * 120.00112 * 273.54838 * 13 11 10 15 15 O 1.21281 * 119.99878 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99771 * 179.97438 * 14 13 11 17 17 S 1.81005 * 109.47200 * 179.97438 * 16 14 13 18 18 C 1.76191 * 100.00071 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00422 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99751 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00146 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00177 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47032 * 90.00194 * 22 20 18 24 24 H 1.48502 * 109.47371 * 210.00470 * 22 20 18 25 25 H 1.48501 * 109.47011 * 330.00061 * 22 20 18 26 26 C 1.47851 * 110.99847 * 304.43406 * 8 5 4 27 27 N 1.30719 * 108.94288 * 0.26563 * 4 3 2 28 28 N 1.34425 * 125.96700 * 180.02562 * 2 1 3 29 29 H 0.96999 * 126.82117 * 359.96797 * 28 2 1 30 30 H 1.08999 * 109.46847 * 90.00190 * 1 2 3 31 31 H 1.09005 * 109.46506 * 209.99372 * 1 2 3 32 32 H 1.08992 * 109.47213 * 329.99569 * 1 2 3 33 33 H 1.09003 * 109.47193 * 294.30610 * 7 5 4 34 34 H 1.08991 * 109.46839 * 174.30508 * 7 5 4 35 35 H 1.08994 * 109.46965 * 54.30488 * 7 5 4 36 36 H 1.09006 * 109.88748 * 242.66087 * 9 8 5 37 37 H 1.08995 * 109.88852 * 3.84399 * 9 8 5 38 38 H 1.08995 * 110.70809 * 140.66896 * 10 9 8 39 39 H 1.08999 * 110.70343 * 263.72494 * 10 9 8 40 40 H 0.97003 * 119.99861 * 93.54973 * 13 11 10 41 41 H 1.08995 * 109.47343 * 299.99791 * 16 14 13 42 42 H 1.09006 * 109.47378 * 60.00248 * 16 14 13 43 43 H 0.96994 * 120.00243 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.37366 * 332.47243 * 26 8 5 45 45 H 1.09006 * 110.36931 * 94.81197 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6890 -0.0006 5 6 4.7372 1.6239 -0.0002 6 1 4.4064 2.6276 0.2665 7 6 5.3684 1.6484 -1.3938 8 7 5.7290 1.1589 0.9785 9 6 6.8628 2.0971 1.0684 10 6 6.9752 2.5386 2.5428 11 6 6.2605 1.3927 3.3062 12 1 6.9330 0.5492 3.4630 13 7 5.7162 1.8701 4.5798 14 6 6.4925 1.8843 5.6814 15 8 7.6415 1.5015 5.6185 16 6 5.9326 2.3759 6.9913 17 16 7.2092 2.2715 8.2702 18 6 6.3084 2.8889 9.6529 19 1 5.2780 3.1904 9.5351 20 6 6.9230 2.9879 10.8934 21 7 6.2499 3.4487 11.9266 22 14 8.7049 2.4658 11.0973 23 1 9.5934 3.6277 10.8414 24 1 8.9211 1.9727 12.4813 25 1 9.0167 1.3819 10.1314 26 6 5.1246 1.0210 2.3207 27 7 3.6195 -0.6166 -0.0067 28 7 2.2965 -1.0880 -0.0005 29 1 2.0095 -2.0145 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.7894 0.6686 -1.6192 34 1 6.1587 2.3985 -1.4214 35 1 4.6068 1.8955 -2.1333 36 1 7.7818 1.5990 0.7594 37 1 6.6775 2.9644 0.4347 38 1 8.0199 2.6103 2.8451 39 1 6.4638 3.4881 2.7008 40 1 4.7970 2.1759 4.6301 41 1 5.6103 3.4115 6.8829 42 1 5.0811 1.7584 7.2772 43 1 6.6792 3.5175 12.7936 44 1 4.2859 1.7082 2.4317 45 1 4.7992 -0.0061 2.4866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481698298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 26.023059 kcal Electronic energy + Delta-G solvation = -26463.140909 eV Core-core repulsion = 22642.405190 eV Total energy + Delta-G solvation = -3820.735719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.19962 -41.13641 -39.77410 -36.28664 -34.68418 -34.45302 -33.34052 -32.71966 -31.04339 -30.39711 -28.86318 -28.34777 -27.81161 -25.35319 -22.87752 -22.53864 -21.95526 -21.55605 -20.59011 -19.90773 -18.93812 -18.06436 -17.79383 -17.12334 -16.93875 -16.70302 -16.43177 -16.36228 -15.65325 -15.22773 -15.03192 -14.90989 -14.82721 -14.59451 -14.57437 -13.87591 -13.77420 -13.66587 -13.36554 -13.33544 -13.12271 -13.02136 -12.88060 -12.69196 -12.59804 -12.52526 -12.41764 -12.33502 -11.87572 -11.82113 -11.17846 -11.10892 -11.09310 -11.05682 -10.55143 -10.45865 -10.19948 -9.43322 -9.00832 -8.52368 -6.23299 0.60599 0.96557 1.30923 1.45478 1.51381 1.53658 1.73889 1.76949 2.09551 2.24520 2.65605 2.74419 2.85771 3.09850 3.40242 3.59551 3.69785 3.82055 3.87158 4.02154 4.16943 4.20751 4.21350 4.23149 4.29507 4.44075 4.49232 4.66953 4.69851 4.73843 4.78452 4.84704 4.93183 5.00881 5.05578 5.13752 5.24137 5.25608 5.35042 5.39562 5.69952 5.79800 5.91317 6.10617 6.21482 6.39131 6.92699 7.10173 7.13278 8.60031 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002128 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.229081 B =13156.682646 C =14191.203727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.572 5.572 4 C 0.223 3.777 5 C 0.171 3.829 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.519 5.519 9 C 0.051 3.949 10 C -0.149 4.149 11 C 0.140 3.860 12 H 0.081 0.919 13 N -0.706 5.706 14 C 0.539 3.461 15 O -0.557 6.557 16 C -0.111 4.111 17 S -0.173 6.173 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.058 3.942 27 N -0.316 5.316 28 N -0.480 5.480 29 H 0.453 0.547 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.415 0.585 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.057 0.943 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 -6.159 -31.718 34.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 N -0.303 5.303 4 C -0.061 4.061 5 C 0.060 3.940 6 H 0.092 0.908 7 C -0.191 4.191 8 N -0.245 5.245 9 C -0.076 4.076 10 C -0.189 4.189 11 C 0.034 3.966 12 H 0.099 0.901 13 N -0.359 5.359 14 C 0.325 3.675 15 O -0.435 6.435 16 C -0.262 4.262 17 S 0.053 5.947 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.070 4.070 27 N -0.146 5.146 28 N -0.200 5.200 29 H 0.302 0.698 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.252 0.748 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.259 -7.272 -31.837 33.944 hybrid contribution -1.885 0.613 1.206 2.320 sum -11.144 -6.659 -30.631 33.268 Atomic orbital electron populations 1.20626 0.80431 1.06370 1.06013 1.25174 0.98134 0.82158 0.93843 1.70347 1.01502 1.31175 1.27253 1.24146 0.93132 0.90378 0.98401 1.20112 0.85730 0.92904 0.95228 0.90816 1.21796 1.01191 1.03493 0.92631 1.63608 1.08221 1.47411 1.05280 1.22851 0.94442 0.95172 0.95165 1.23141 1.01846 0.98381 0.95502 1.21991 0.95477 0.97081 0.82036 0.90082 1.45641 1.16161 1.66409 1.07699 1.19944 0.85581 0.77027 0.84945 1.90693 1.19136 1.47915 1.85733 1.23264 1.02585 1.06268 0.94100 1.84711 1.20608 1.85653 1.03693 1.22456 1.00751 1.48966 0.95486 0.91948 1.25573 1.02437 0.93615 0.94427 1.70014 1.39022 1.45100 1.01323 0.85863 0.79856 0.80965 0.79669 1.18615 1.18315 1.16120 1.22950 0.95211 1.01271 0.87614 1.78078 0.97590 1.12593 1.26293 1.48095 1.03741 1.11005 1.57147 0.69832 0.87231 0.87304 0.88301 0.92065 0.89489 0.91611 0.89203 0.89727 0.91026 0.90240 0.74841 0.86736 0.86904 0.91346 0.92478 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.28 3.81 8.24 138.23 1.14 4.95 16 3 N -0.57 -11.30 11.19 -179.73 -2.01 -13.31 16 4 C 0.22 4.58 5.80 138.63 0.80 5.39 16 5 C 0.17 2.98 2.17 44.17 0.10 3.08 16 6 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 7 C -0.13 -1.84 9.01 71.98 0.65 -1.19 16 8 N -0.52 -9.76 5.01 -864.74 -4.33 -14.09 16 9 C 0.05 0.82 6.23 86.65 0.54 1.36 16 10 C -0.15 -3.02 6.64 31.77 0.21 -2.81 16 11 C 0.14 3.29 3.31 46.37 0.15 3.44 16 12 H 0.08 2.33 7.73 -2.39 -0.02 2.31 16 13 N -0.71 -17.65 5.23 -436.01 -2.28 -19.93 16 14 C 0.54 18.80 7.85 87.66 0.69 19.49 16 15 O -0.56 -23.99 15.61 -3.03 -0.05 -24.04 16 16 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 17 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 18 C -0.53 -30.94 10.04 67.95 0.68 -30.25 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 20 C 0.04 2.65 5.50 84.86 0.47 3.11 16 21 N -0.92 -56.02 13.97 21.65 0.30 -55.71 16 22 Si 0.91 45.26 27.74 68.60 1.90 47.16 16 23 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 26 C 0.06 1.19 5.37 86.77 0.47 1.65 16 27 N -0.32 -6.69 12.78 -51.33 -0.66 -7.35 16 28 N -0.48 -6.58 7.45 -50.71 -0.38 -6.96 16 29 H 0.45 2.97 8.96 -213.10 -1.91 1.06 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.87 6.89 -2.39 -0.02 0.85 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.01 6.58 -2.39 -0.02 0.99 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.41 7.93 8.52 -92.71 -0.79 7.14 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 43 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.06 1.11 7.59 -2.39 -0.02 1.09 16 45 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -80.81 385.58 -3.18 -83.99 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -1.71 Total: 15.16 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.08 Total: 4.94 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -9.35 Total: -117.36 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -80.81 -3.18 -83.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481698298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.011 kcal (2) G-P(sol) polarization free energy of solvation -80.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds