Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46818 * 2 1 4 4 N 1.46903 * 109.47078 * 119.99826 * 2 1 3 5 5 C 1.46902 * 110.99831 * 274.99829 * 4 2 1 6 6 C 1.50699 * 109.46833 * 179.97438 * 5 4 2 7 7 C 1.31005 * 119.99776 * 125.00436 * 6 5 4 8 8 C 1.50702 * 119.99932 * 180.27660 * 7 6 5 9 9 N 1.46500 * 109.47089 * 124.72256 * 8 7 6 10 10 C 1.34774 * 119.99908 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99840 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.00043 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47098 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00110 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99468 * 359.97438 * 14 13 12 16 16 C 1.38796 * 120.00279 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47338 * 89.99566 * 18 16 14 20 20 H 1.48501 * 109.47424 * 209.99828 * 18 16 14 21 21 H 1.48503 * 109.46791 * 329.99661 * 18 16 14 22 22 C 1.50696 * 109.46686 * 239.99623 * 2 1 3 23 23 N 1.30522 * 126.34912 * 284.68281 * 22 2 1 24 24 N 1.28596 * 109.67132 * 179.82906 * 23 22 2 25 25 C 1.30518 * 109.67586 * 0.45218 * 24 23 22 26 26 N 1.35495 * 107.30647 * 359.73024 * 25 24 23 27 27 C 1.46499 * 126.98502 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47141 * 300.00038 * 1 2 3 29 29 H 1.08998 * 109.47439 * 60.00035 * 1 2 3 30 30 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 31 31 H 1.00899 * 111.00004 * 38.95303 * 4 2 1 32 32 H 1.09005 * 109.47160 * 60.00360 * 5 4 2 33 33 H 1.08994 * 109.46952 * 300.00282 * 5 4 2 34 34 H 1.08002 * 120.00511 * 305.00374 * 6 5 4 35 35 H 1.08002 * 119.99708 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.47005 * 244.72313 * 8 7 6 37 37 H 1.08999 * 109.47073 * 4.72010 * 8 7 6 38 38 H 0.96998 * 119.99957 * 359.97438 * 9 8 7 39 39 H 1.09004 * 109.46954 * 299.99342 * 12 10 9 40 40 H 1.08999 * 109.47311 * 59.99782 * 12 10 9 41 41 H 0.97002 * 120.00228 * 180.02562 * 17 16 14 42 42 H 1.08001 * 126.34995 * 179.72787 * 25 24 23 43 43 H 1.09002 * 109.47069 * 270.00519 * 27 26 25 44 44 H 1.09013 * 109.47016 * 29.99504 * 27 26 25 45 45 H 1.08997 * 109.47838 * 149.99362 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5874 -0.5217 3.5560 7 6 3.6322 -0.0774 4.2096 8 6 4.1409 -0.8253 5.4151 9 7 5.5570 -1.1497 5.2267 10 6 6.2272 -1.8223 6.1832 11 8 5.6580 -2.1586 7.2000 12 6 7.6842 -2.1555 5.9897 13 16 8.2950 -3.0538 7.4375 14 6 9.9703 -3.3089 6.9549 15 1 10.3199 -2.9399 6.0020 16 6 10.8405 -3.9848 7.7989 17 7 10.4143 -4.4350 8.9601 18 14 12.6167 -4.2546 7.2877 19 1 13.4450 -3.1138 7.7545 20 1 13.1208 -5.5130 7.8940 21 1 12.6966 -4.3515 5.8080 22 6 2.0322 -0.7105 -1.2304 23 7 2.0388 -2.0003 -1.4304 24 7 2.5343 -2.2561 -2.5892 25 6 2.8751 -1.1418 -3.1772 26 7 2.5663 -0.1291 -2.3317 27 6 2.7682 1.3036 -2.5616 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.4496 -1.4979 1.4101 32 1 1.0871 0.6164 2.5525 33 1 2.7588 1.0462 2.1181 34 1 2.0878 -1.4214 3.8838 35 1 4.1320 0.8220 3.8816 36 1 4.0254 -0.2041 6.3033 37 1 3.5705 -1.7458 5.5388 38 1 6.0121 -0.8811 4.4133 39 1 7.8000 -2.7762 5.1011 40 1 8.2543 -1.2347 5.8667 41 1 11.0224 -4.9071 9.5502 42 1 3.3207 -1.0449 -4.1562 43 1 3.7543 1.5943 -2.1995 44 1 2.6965 1.5140 -3.6288 45 1 2.0039 1.8686 -2.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482979635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = 62.685349 kcal Electronic energy + Delta-G solvation = -24990.590573 eV Core-core repulsion = 21171.444650 eV Total energy + Delta-G solvation = -3819.145923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47443 -39.13946 -38.06937 -35.86832 -35.41690 -33.59233 -32.39483 -31.41043 -29.86276 -29.17006 -28.17050 -26.76081 -25.44220 -24.44916 -23.27815 -22.51663 -20.94918 -20.48759 -19.77294 -17.81310 -17.74839 -16.82363 -16.43278 -16.23648 -16.05264 -15.79042 -15.29012 -15.14530 -14.88146 -14.77219 -14.19380 -14.06073 -13.87933 -13.78441 -13.57228 -13.42782 -13.02741 -12.85104 -12.57140 -12.46031 -12.29199 -12.12268 -11.79484 -11.69225 -11.37303 -11.03462 -10.99017 -10.73405 -10.66892 -10.61286 -9.90302 -9.77576 -9.58421 -9.28100 -9.03809 -8.94856 -8.76788 -8.19673 -6.46116 -6.18286 -3.88528 1.37425 1.72314 2.00335 2.58013 3.13904 3.14971 3.25017 3.31252 3.38208 3.59888 3.81421 3.85487 4.00108 4.15259 4.23777 4.27465 4.33570 4.42406 4.47539 4.67929 4.72680 4.85741 4.90072 4.98578 5.11629 5.12664 5.16778 5.19109 5.30157 5.38411 5.49694 5.53361 5.62458 5.77332 5.84570 5.94199 6.19007 6.28874 6.29998 6.40055 6.47129 6.68810 6.82072 7.63035 7.76818 8.38737 8.41969 8.66056 9.26979 10.89156 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.001660 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.516785 B =16868.147216 C =18332.814155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.175 3.825 3 H 0.093 0.907 4 N -0.671 5.671 5 C 0.090 3.910 6 C -0.139 4.139 7 C -0.155 4.155 8 C 0.150 3.850 9 N -0.735 5.735 10 C 0.532 3.468 11 O -0.519 6.519 12 C -0.153 4.153 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.188 3.812 23 N -0.277 5.277 24 N -0.296 5.296 25 C 0.146 3.854 26 N -0.478 5.478 27 C 0.071 3.929 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.358 0.642 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.218 0.782 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.081 18.119 -25.201 37.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.062 3.938 3 H 0.111 0.889 4 N -0.304 5.304 5 C -0.038 4.038 6 C -0.158 4.158 7 C -0.175 4.175 8 C 0.026 3.974 9 N -0.390 5.390 10 C 0.318 3.682 11 O -0.394 6.394 12 C -0.304 4.304 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.081 4.081 23 N -0.117 5.117 24 N -0.135 5.135 25 C -0.141 4.141 26 N -0.169 5.169 27 C -0.073 4.073 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.234 0.766 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.525 16.057 -23.256 35.524 hybrid contribution 1.428 1.935 -2.146 3.223 sum -20.096 17.992 -25.402 37.052 Atomic orbital electron populations 1.22491 0.94639 1.03904 1.02825 1.19643 0.93214 0.95745 0.85180 0.88901 1.60254 1.58191 1.09686 1.02235 1.21064 0.99809 0.94638 0.88311 1.22704 0.98081 0.99919 0.95094 1.22896 0.97239 1.00114 0.97207 1.20255 0.82241 0.98906 0.95965 1.45975 1.10864 1.60103 1.22038 1.20323 0.88551 0.76688 0.82670 1.90701 1.69476 1.51543 1.27632 1.23531 0.94193 1.05084 1.07560 1.85384 1.09702 1.70225 1.18088 1.22872 0.95510 1.42823 1.07108 0.90928 1.24993 0.99295 0.94788 0.94557 1.70020 1.35866 1.35568 1.08848 0.86165 0.82712 0.77834 0.78769 1.20302 1.20756 1.19693 1.24670 1.01226 0.91135 0.91022 1.74238 1.17387 1.10672 1.09389 1.74305 1.14231 1.22978 1.02024 1.26460 1.04568 0.83561 0.99532 1.46172 1.46522 1.09346 1.14897 1.22129 1.03959 0.76805 1.04363 0.91109 0.91859 0.90871 0.82200 0.93775 0.90450 0.86632 0.86749 0.90848 0.91221 0.76702 0.89166 0.89237 0.92209 0.76578 0.89704 0.88780 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 9.14 37.16 0.34 -0.42 16 2 C 0.18 0.98 2.90 -68.86 -0.20 0.78 16 3 H 0.09 0.33 6.89 -51.93 -0.36 -0.02 16 4 N -0.67 -4.74 6.22 -109.22 -0.68 -5.41 16 5 C 0.09 0.50 5.92 -4.98 -0.03 0.47 16 6 C -0.14 -1.03 9.38 -36.03 -0.34 -1.37 16 7 C -0.16 -1.30 9.24 -36.03 -0.33 -1.64 16 8 C 0.15 1.78 6.11 -5.19 -0.03 1.75 16 9 N -0.74 -10.27 5.55 -61.47 -0.34 -10.61 16 10 C 0.53 10.27 7.85 -10.99 -0.09 10.18 16 11 O -0.52 -12.13 15.86 5.55 0.09 -12.04 16 12 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 13 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 14 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 15 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.52 13.22 55.49 0.73 -25.78 16 18 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.19 1.59 6.87 -154.98 -1.07 0.53 16 23 N -0.28 -3.40 12.21 32.80 0.40 -3.00 16 24 N -0.30 -3.57 12.21 29.69 0.36 -3.21 16 25 C 0.15 1.08 12.74 -89.95 -1.15 -0.06 16 26 N -0.48 -2.89 3.15 -122.68 -0.39 -3.27 16 27 C 0.07 0.08 10.84 59.85 0.65 0.73 16 28 H 0.07 0.22 7.45 -51.93 -0.39 -0.17 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.36 2.65 8.46 -39.29 -0.33 2.31 16 32 H 0.04 0.19 7.44 -51.93 -0.39 -0.20 16 33 H 0.08 0.39 7.71 -51.93 -0.40 -0.01 16 34 H 0.12 0.89 7.84 -52.49 -0.41 0.47 16 35 H 0.11 0.81 7.84 -52.49 -0.41 0.40 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 38 H 0.40 4.50 8.46 -40.82 -0.35 4.16 16 39 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 44 H 0.09 -0.09 8.14 -51.92 -0.42 -0.51 16 45 H 0.09 -0.02 7.46 -51.93 -0.39 -0.41 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -40.02 400.51 -9.59 -49.61 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.75 Total: 0.08 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.82 Total: -5.22 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.09 Total: -51.28 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.02 -9.59 -49.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482979635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.295 kcal (2) G-P(sol) polarization free energy of solvation -40.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds