Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46818 * 2 1 4 4 N 1.46903 * 109.47078 * 119.99826 * 2 1 3 5 5 C 1.46902 * 110.99831 * 274.99829 * 4 2 1 6 6 C 1.50699 * 109.46833 * 179.97438 * 5 4 2 7 7 C 1.31005 * 119.99776 * 125.00436 * 6 5 4 8 8 C 1.50702 * 119.99932 * 180.27660 * 7 6 5 9 9 N 1.46500 * 109.47089 * 124.72256 * 8 7 6 10 10 C 1.34774 * 119.99908 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99840 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.00043 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47098 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00110 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99468 * 359.97438 * 14 13 12 16 16 C 1.38796 * 120.00279 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47338 * 89.99566 * 18 16 14 20 20 H 1.48501 * 109.47424 * 209.99828 * 18 16 14 21 21 H 1.48503 * 109.46791 * 329.99661 * 18 16 14 22 22 C 1.50696 * 109.46686 * 239.99623 * 2 1 3 23 23 N 1.30522 * 126.34912 * 284.68281 * 22 2 1 24 24 N 1.28596 * 109.67132 * 179.82906 * 23 22 2 25 25 C 1.30518 * 109.67586 * 0.45218 * 24 23 22 26 26 N 1.35495 * 107.30647 * 359.73024 * 25 24 23 27 27 C 1.46499 * 126.98502 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47141 * 300.00038 * 1 2 3 29 29 H 1.08998 * 109.47439 * 60.00035 * 1 2 3 30 30 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 31 31 H 1.00899 * 111.00004 * 38.95303 * 4 2 1 32 32 H 1.09005 * 109.47160 * 60.00360 * 5 4 2 33 33 H 1.08994 * 109.46952 * 300.00282 * 5 4 2 34 34 H 1.08002 * 120.00511 * 305.00374 * 6 5 4 35 35 H 1.08002 * 119.99708 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.47005 * 244.72313 * 8 7 6 37 37 H 1.08999 * 109.47073 * 4.72010 * 8 7 6 38 38 H 0.96998 * 119.99957 * 359.97438 * 9 8 7 39 39 H 1.09004 * 109.46954 * 299.99342 * 12 10 9 40 40 H 1.08999 * 109.47311 * 59.99782 * 12 10 9 41 41 H 0.97002 * 120.00228 * 180.02562 * 17 16 14 42 42 H 1.08001 * 126.34995 * 179.72787 * 25 24 23 43 43 H 1.09002 * 109.47069 * 270.00519 * 27 26 25 44 44 H 1.09013 * 109.47016 * 29.99504 * 27 26 25 45 45 H 1.08997 * 109.47838 * 149.99362 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5874 -0.5217 3.5560 7 6 3.6322 -0.0774 4.2096 8 6 4.1409 -0.8253 5.4151 9 7 5.5570 -1.1497 5.2267 10 6 6.2272 -1.8223 6.1832 11 8 5.6580 -2.1586 7.2000 12 6 7.6842 -2.1555 5.9897 13 16 8.2950 -3.0538 7.4375 14 6 9.9703 -3.3089 6.9549 15 1 10.3199 -2.9399 6.0020 16 6 10.8405 -3.9848 7.7989 17 7 10.4143 -4.4350 8.9601 18 14 12.6167 -4.2546 7.2877 19 1 13.4450 -3.1138 7.7545 20 1 13.1208 -5.5130 7.8940 21 1 12.6966 -4.3515 5.8080 22 6 2.0322 -0.7105 -1.2304 23 7 2.0388 -2.0003 -1.4304 24 7 2.5343 -2.2561 -2.5892 25 6 2.8751 -1.1418 -3.1772 26 7 2.5663 -0.1291 -2.3317 27 6 2.7682 1.3036 -2.5616 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.4496 -1.4979 1.4101 32 1 1.0871 0.6164 2.5525 33 1 2.7588 1.0462 2.1181 34 1 2.0878 -1.4214 3.8838 35 1 4.1320 0.8220 3.8816 36 1 4.0254 -0.2041 6.3033 37 1 3.5705 -1.7458 5.5388 38 1 6.0121 -0.8811 4.4133 39 1 7.8000 -2.7762 5.1011 40 1 8.2543 -1.2347 5.8667 41 1 11.0224 -4.9071 9.5502 42 1 3.3207 -1.0449 -4.1562 43 1 3.7543 1.5943 -2.1995 44 1 2.6965 1.5140 -3.6288 45 1 2.0039 1.8686 -2.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482979635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = 33.159808 kcal Electronic energy + Delta-G solvation = -24991.870896 eV Core-core repulsion = 21171.444650 eV Total energy + Delta-G solvation = -3820.426246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.02294 -40.60827 -38.57505 -36.78116 -35.89711 -34.60484 -34.53508 -32.21312 -30.94224 -30.01586 -28.39244 -27.83291 -27.39592 -25.04236 -23.90618 -23.04078 -21.86872 -21.40388 -20.58754 -19.76914 -18.16298 -17.81782 -17.38254 -17.27679 -16.88166 -16.80301 -16.52662 -16.31762 -15.86200 -15.67732 -15.39656 -15.01757 -14.77090 -14.50022 -14.37157 -14.27977 -13.79004 -13.69677 -13.66429 -13.20265 -13.16882 -12.91279 -12.89130 -12.86593 -12.60778 -12.54716 -12.33362 -12.01961 -11.72932 -11.24456 -11.14349 -11.09541 -11.03351 -10.45463 -10.28399 -10.21355 -10.00269 -9.36586 -8.67184 -8.34702 -6.13050 0.86885 1.03889 1.30558 1.42546 1.48818 1.59473 1.60186 1.64958 1.95391 2.27069 2.45594 2.99213 3.18546 3.32932 3.37180 3.75314 3.75941 3.91829 3.97100 4.00064 4.04875 4.12619 4.28927 4.40851 4.44714 4.49782 4.50285 4.53817 4.55441 4.65494 4.69843 4.70588 4.83277 4.88816 4.97896 5.15894 5.27071 5.38185 5.41726 5.67016 5.79044 5.92967 6.07076 6.19797 6.30089 6.50744 7.06331 7.23312 7.82272 8.74591 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.001660 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.516785 B =16868.147216 C =18332.814155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.178 3.822 3 H 0.121 0.879 4 N -0.690 5.690 5 C 0.095 3.905 6 C -0.128 4.128 7 C -0.161 4.161 8 C 0.148 3.852 9 N -0.709 5.709 10 C 0.532 3.468 11 O -0.568 6.568 12 C -0.130 4.130 13 S -0.152 6.152 14 C -0.547 4.547 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.259 1.259 22 C 0.185 3.815 23 N -0.332 5.332 24 N -0.358 5.358 25 C 0.155 3.845 26 N -0.474 5.474 27 C 0.061 3.939 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.351 0.649 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.416 0.584 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.256 0.744 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.617 21.081 -27.949 40.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.065 3.935 3 H 0.139 0.861 4 N -0.322 5.322 5 C -0.033 4.033 6 C -0.147 4.147 7 C -0.180 4.180 8 C 0.025 3.975 9 N -0.363 5.363 10 C 0.318 3.682 11 O -0.446 6.446 12 C -0.281 4.281 13 S 0.075 5.925 14 C -0.695 4.695 15 H 0.101 0.899 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.821 3.179 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.183 1.183 22 C -0.085 4.085 23 N -0.171 5.171 24 N -0.196 5.196 25 C -0.134 4.134 26 N -0.164 5.164 27 C -0.080 4.080 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.253 0.747 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.271 0.729 43 H 0.111 0.889 44 H 0.136 0.864 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.078 19.076 -26.062 38.567 hybrid contribution 1.151 1.108 -1.405 2.128 sum -19.926 20.184 -27.468 39.483 Atomic orbital electron populations 1.22422 0.93755 1.02894 1.04047 1.19816 0.93811 0.96338 0.83489 0.86149 1.60224 1.58653 1.10137 1.03171 1.21073 1.01136 0.94233 0.86821 1.22885 0.97200 0.99378 0.95251 1.22707 0.98126 1.00895 0.96253 1.20362 0.80507 0.98753 0.97845 1.45761 1.11667 1.57754 1.21142 1.20094 0.88055 0.77086 0.82971 1.90688 1.70165 1.53944 1.29837 1.23375 0.95383 1.05137 1.04176 1.85564 1.11042 1.72277 1.23582 1.23206 0.95581 1.43074 1.07601 0.89926 1.26150 1.04604 0.94144 0.94363 1.70186 1.37821 1.36455 1.10274 0.84934 0.75989 0.77995 0.78934 1.19141 1.20278 1.18291 1.25175 1.00461 0.90595 0.92270 1.74100 1.19519 1.13236 1.10287 1.74168 1.16759 1.25768 1.02950 1.27161 1.02818 0.82964 1.00453 1.46439 1.45288 1.10981 1.13742 1.22539 1.05050 0.73957 1.06454 0.89381 0.91030 0.93020 0.82959 0.91741 0.89029 0.87425 0.84597 0.91436 0.92546 0.74711 0.87469 0.87001 0.91973 0.72871 0.88873 0.86399 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 9.14 71.98 0.66 -0.48 16 2 C 0.18 1.59 2.90 44.17 0.13 1.72 16 3 H 0.12 0.38 6.89 -2.39 -0.02 0.37 16 4 N -0.69 -8.53 6.22 -499.45 -3.11 -11.64 16 5 C 0.09 0.77 5.92 85.56 0.51 1.28 16 6 C -0.13 -1.64 9.38 25.64 0.24 -1.40 16 7 C -0.16 -2.33 9.24 25.64 0.24 -2.09 16 8 C 0.15 3.39 6.11 85.63 0.52 3.91 16 9 N -0.71 -18.84 5.55 -466.78 -2.59 -21.43 16 10 C 0.53 20.46 7.85 87.66 0.69 21.15 16 11 O -0.57 -27.27 15.86 -3.05 -0.05 -27.32 16 12 C -0.13 -5.31 6.16 71.24 0.44 -4.88 16 13 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 14 C -0.55 -31.85 9.50 67.95 0.65 -31.20 16 15 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 16 C 0.01 0.70 5.49 84.86 0.47 1.17 16 17 N -0.91 -56.80 13.22 21.65 0.29 -56.51 16 18 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 C 0.19 2.94 6.87 137.97 0.95 3.88 16 23 N -0.33 -8.35 12.21 -50.15 -0.61 -8.97 16 24 N -0.36 -8.82 12.21 -59.99 -0.73 -9.55 16 25 C 0.15 2.10 12.74 180.11 2.30 4.40 16 26 N -0.47 -4.75 3.15 -542.06 -1.71 -6.45 16 27 C 0.06 -0.08 10.84 127.77 1.38 1.31 16 28 H 0.09 0.28 7.45 -2.38 -0.02 0.26 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.58 8.13 -2.39 -0.02 0.56 16 31 H 0.35 5.04 8.46 -89.69 -0.76 4.28 16 32 H 0.06 0.30 7.44 -2.38 -0.02 0.29 16 33 H 0.09 0.53 7.71 -2.39 -0.02 0.52 16 34 H 0.11 1.56 7.84 -2.91 -0.02 1.53 16 35 H 0.14 1.43 7.84 -2.91 -0.02 1.41 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.46 7.79 -2.39 -0.02 1.44 16 38 H 0.42 8.32 8.46 -92.71 -0.78 7.53 16 39 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 40 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.26 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.12 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H 0.11 -0.50 7.46 -2.39 -0.02 -0.52 16 Total: -1.00 -92.53 400.51 0.99 -91.54 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.53 Total: 15.03 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 9.16 Total: -1.24 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -8.46 Total: -114.55 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -92.53 0.99 -91.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482979635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.704 kcal (2) G-P(sol) polarization free energy of solvation -92.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds