Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30831 * 125.96009 * 2 1 4 4 C 1.33243 * 109.82702 * 180.12193 * 3 2 1 5 5 C 1.50701 * 125.52859 * 179.84962 * 4 3 2 6 6 H 1.09000 * 109.46771 * 14.72013 * 5 4 3 7 7 C 1.52998 * 109.47484 * 254.71902 * 5 4 3 8 8 N 1.46903 * 109.47022 * 134.71584 * 5 4 3 9 9 C 1.46902 * 110.99831 * 205.00192 * 8 5 4 10 10 C 1.50699 * 109.46833 * 179.97438 * 9 8 5 11 11 C 1.31005 * 119.99776 * 125.00436 * 10 9 8 12 12 C 1.50702 * 119.99932 * 180.27660 * 11 10 9 13 13 N 1.46500 * 109.47089 * 124.72256 * 12 11 10 14 14 C 1.34774 * 119.99908 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99840 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00043 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47098 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00110 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99468 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00279 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00290 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47003 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47392 * 119.99738 * 22 20 18 25 25 H 1.48501 * 109.46922 * 240.00014 * 22 20 18 26 26 N 1.30714 * 108.94720 * 359.58647 * 4 3 2 27 27 N 1.34428 * 125.95941 * 179.66455 * 2 1 3 28 28 H 0.97002 * 126.82554 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47396 * 270.30886 * 1 2 3 30 30 H 1.08998 * 109.47149 * 30.30697 * 1 2 3 31 31 H 1.09004 * 109.47535 * 150.30788 * 1 2 3 32 32 H 1.09002 * 109.46690 * 299.99876 * 7 5 4 33 33 H 1.08999 * 109.47181 * 59.99543 * 7 5 4 34 34 H 1.08996 * 109.47280 * 180.02562 * 7 5 4 35 35 H 1.00899 * 111.00004 * 328.95665 * 8 5 4 36 36 H 1.09005 * 109.47160 * 60.00360 * 9 8 5 37 37 H 1.08994 * 109.46952 * 300.00282 * 9 8 5 38 38 H 1.08002 * 120.00511 * 305.00374 * 10 9 8 39 39 H 1.08002 * 119.99708 * 359.97438 * 11 10 9 40 40 H 1.09002 * 109.47005 * 244.72313 * 12 11 10 41 41 H 1.08999 * 109.47073 * 4.72010 * 12 11 10 42 42 H 0.96998 * 119.99957 * 359.97438 * 13 12 11 43 43 H 1.09004 * 109.46954 * 299.99342 * 16 14 13 44 44 H 1.08999 * 109.47311 * 59.99782 * 16 14 13 45 45 H 0.97002 * 120.00228 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6887 -0.0027 5 6 4.7372 1.6235 -0.0068 6 1 4.4062 2.6288 0.2539 7 6 5.3697 1.6400 -1.3998 8 7 5.7282 1.1642 0.9756 9 6 6.5664 2.2783 1.4383 10 6 7.5680 1.7699 2.4429 11 6 8.8474 1.9814 2.2569 12 6 9.8495 1.4676 3.2583 13 7 10.8366 0.6282 2.5747 14 6 11.8355 0.0560 3.2755 15 8 11.9175 0.2363 4.4721 16 6 12.8513 -0.8070 2.5722 17 16 14.0547 -1.4243 3.7750 18 6 15.0903 -2.3740 2.7119 19 1 14.8729 -2.4303 1.6555 20 6 16.1849 -3.0505 3.2322 21 7 16.4496 -2.9822 4.5198 22 14 17.2832 -4.0567 2.1051 23 1 16.7743 -3.9713 0.7126 24 1 18.6685 -3.5248 2.1597 25 1 17.2795 -5.4745 2.5469 26 7 3.6194 -0.6168 0.0045 27 7 2.2963 -1.0881 0.0064 28 1 2.0093 -2.0146 0.0121 29 1 -0.3634 0.0055 1.0276 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 5.7007 0.6347 -1.6604 33 1 4.6344 1.9808 -2.1287 34 1 6.2249 2.3158 -1.4026 35 1 5.2799 0.7021 1.7525 36 1 5.9376 3.0368 1.9046 37 1 7.0923 2.7144 0.5889 38 1 7.2312 1.2311 3.3162 39 1 9.1843 2.5199 1.3834 40 1 10.3543 2.3096 3.7320 41 1 9.3351 0.8785 4.0175 42 1 10.7708 0.4837 1.6178 43 1 12.3467 -1.6488 2.0979 44 1 13.3660 -0.2174 1.8136 45 1 17.2147 -3.4547 4.8834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482981770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = 59.973814 kcal Electronic energy + Delta-G solvation = -24636.838665 eV Core-core repulsion = 20817.575161 eV Total energy + Delta-G solvation = -3819.263504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.67387 -39.11306 -37.86391 -35.76997 -33.87926 -32.89212 -32.62912 -32.39251 -30.62050 -29.25589 -28.50031 -26.80441 -25.44732 -24.54807 -23.01520 -21.51468 -20.67298 -20.38608 -19.69299 -18.42144 -17.80539 -16.54418 -16.32995 -16.30138 -15.98737 -15.40817 -15.14563 -14.86860 -14.77120 -14.55021 -14.06230 -13.90119 -13.83082 -13.60018 -13.48112 -13.03261 -12.83310 -12.65487 -12.51625 -12.49410 -12.32274 -12.12785 -11.67143 -11.61954 -11.29607 -11.04224 -10.98117 -10.72653 -10.59785 -10.53504 -9.98252 -9.81937 -9.74600 -9.26361 -9.04322 -8.87268 -8.72122 -8.18639 -6.45742 -6.18340 -3.88367 1.07850 1.78354 2.11590 2.32403 3.14948 3.16744 3.24262 3.28436 3.31858 3.39414 3.79892 3.87774 4.04765 4.23877 4.27375 4.48951 4.64716 4.74563 4.79925 4.88260 4.98060 5.08098 5.12736 5.15749 5.16903 5.22697 5.30890 5.38340 5.47768 5.57340 5.64604 5.71608 5.83469 5.87255 5.94194 5.95569 6.20251 6.36658 6.41037 6.48829 6.57499 6.72202 6.87225 7.59838 7.63570 7.79673 8.39158 8.68114 9.27179 10.89202 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.001464 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.131145 B =19124.386244 C =19958.861347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.539 5.539 4 C 0.220 3.780 5 C 0.181 3.819 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.672 5.672 9 C 0.087 3.913 10 C -0.137 4.137 11 C -0.156 4.156 12 C 0.150 3.850 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.285 5.285 27 N -0.484 5.484 28 H 0.441 0.559 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.346 0.654 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.195 9.912 -12.303 37.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.002 3.998 3 N -0.268 5.268 4 C -0.063 4.063 5 C 0.069 3.931 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.305 5.305 9 C -0.041 4.041 10 C -0.157 4.157 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.389 5.389 14 C 0.317 3.683 15 O -0.394 6.394 16 C -0.303 4.303 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.114 5.114 27 N -0.202 5.202 28 H 0.287 0.713 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.916 9.944 -10.614 35.987 hybrid contribution -0.482 -1.181 -1.955 2.335 sum -33.398 8.764 -12.570 36.746 Atomic orbital electron populations 1.20413 0.83514 1.05117 1.04714 1.24420 0.96685 0.82862 0.95787 1.70356 1.01264 1.29668 1.25557 1.24215 0.92970 0.90379 0.98730 1.19765 0.84695 0.93386 0.95249 0.90922 1.21786 1.00561 1.03529 0.93588 1.60574 1.23940 1.27849 1.18095 1.21110 0.94401 0.91723 0.96880 1.22699 0.94295 0.99799 0.98861 1.22899 0.94182 1.00548 0.99892 1.20251 0.88909 0.94440 0.93732 1.45976 1.28864 1.52112 1.11976 1.20323 0.81036 0.79400 0.87515 1.90699 1.73793 1.60245 1.14687 1.23529 1.00509 1.01318 1.04988 1.85386 1.26381 1.61863 1.09863 1.22921 1.14254 1.34910 0.96170 0.90860 1.24988 0.96877 0.96230 0.95498 1.70032 1.27792 1.41001 1.11520 0.86117 0.79785 0.79423 0.80172 1.19610 1.20581 1.20596 1.78173 0.95925 1.12147 1.25108 1.48135 1.04509 1.10194 1.57382 0.71294 0.88875 0.88281 0.89740 0.91242 0.92231 0.91338 0.83493 0.93930 0.89965 0.86958 0.86577 0.90866 0.91351 0.76635 0.89178 0.89192 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.51 36.00 0.38 0.25 16 2 C 0.28 1.78 8.24 -155.70 -1.28 0.50 16 3 N -0.54 -5.01 11.19 -8.16 -0.09 -5.10 16 4 C 0.22 2.13 6.64 -156.85 -1.04 1.09 16 5 C 0.18 1.48 3.16 -68.86 -0.22 1.26 16 6 H 0.07 0.55 7.80 -51.93 -0.40 0.14 16 7 C -0.14 -1.02 9.40 37.16 0.35 -0.67 16 8 N -0.67 -5.62 6.28 -109.22 -0.69 -6.30 16 9 C 0.09 0.62 5.92 -4.98 -0.03 0.59 16 10 C -0.14 -1.14 9.38 -36.03 -0.34 -1.48 16 11 C -0.16 -1.40 9.24 -36.03 -0.33 -1.73 16 12 C 0.15 1.84 6.11 -5.19 -0.03 1.80 16 13 N -0.73 -10.37 5.55 -61.47 -0.34 -10.72 16 14 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 15 O -0.52 -12.19 15.86 5.55 0.09 -12.10 16 16 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 N -0.28 -2.85 12.78 32.42 0.41 -2.43 16 27 N -0.48 -3.14 7.45 32.62 0.24 -2.90 16 28 H 0.44 1.33 8.96 -182.33 -1.63 -0.30 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 7.45 -51.93 -0.39 0.05 16 35 H 0.35 3.05 8.34 -39.29 -0.33 2.72 16 36 H 0.04 0.27 8.06 -51.93 -0.42 -0.14 16 37 H 0.08 0.54 7.09 -51.93 -0.37 0.17 16 38 H 0.11 0.95 7.84 -52.49 -0.41 0.54 16 39 H 0.12 0.90 7.84 -52.49 -0.41 0.49 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 42 H 0.40 4.55 8.46 -40.82 -0.35 4.20 16 43 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 402.24 15.07 6.06 6.06 Total: -1.00 -38.33 402.24 -11.06 -49.39 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.04 Total: 1.40 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.21 Total: -4.29 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.27 Total: -53.22 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.33 -11.06 -49.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482981770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.364 kcal (2) G-P(sol) polarization free energy of solvation -38.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds