Wall clock time and date at job start Sat Apr 11 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46760 * 2 1 4 4 C 1.35637 * 125.67368 * 265.31903 * 3 2 1 5 5 C 1.35520 * 108.84538 * 179.83590 * 4 3 2 6 6 Cl 1.73598 * 126.07015 * 180.17201 * 5 4 3 7 7 C 1.39890 * 107.85192 * 0.42935 * 5 4 3 8 8 C 1.37633 * 125.67377 * 85.63438 * 3 2 1 9 9 C 1.46664 * 126.22704 * 0.02562 * 8 3 2 10 10 O 1.21701 * 119.99877 * 5.62775 * 9 8 3 11 11 N 1.34770 * 120.00215 * 185.63163 * 9 8 3 12 12 C 1.47028 * 125.64917 * 354.60280 * 11 9 8 13 13 C 1.54314 * 107.27756 * 180.96782 * 12 11 9 14 14 C 1.55160 * 102.86223 * 22.52204 * 13 12 11 15 15 H 1.09008 * 111.03606 * 82.39415 * 14 13 12 16 16 C 1.53003 * 111.00366 * 206.22713 * 14 13 12 17 17 C 1.52999 * 109.46915 * 178.65164 * 16 14 13 18 18 N 1.46504 * 109.47150 * 180.02562 * 17 16 14 19 19 C 1.36927 * 120.00054 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00396 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00275 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99528 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00412 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46963 * 89.99951 * 23 21 19 25 25 H 1.48504 * 109.46904 * 209.99598 * 23 21 19 26 26 H 1.48492 * 109.47172 * 330.00008 * 23 21 19 27 27 C 1.47425 * 125.64946 * 174.90700 * 11 9 8 28 28 H 1.08994 * 109.47278 * 295.02269 * 1 2 3 29 29 H 1.09006 * 109.47052 * 175.01627 * 1 2 3 30 30 H 1.09001 * 109.46932 * 55.02311 * 1 2 3 31 31 H 1.08993 * 109.47019 * 120.00384 * 2 1 3 32 32 H 1.09007 * 109.47031 * 240.00369 * 2 1 3 33 33 H 1.07996 * 125.57537 * 359.96691 * 4 3 2 34 34 H 1.08000 * 126.44708 * 179.70281 * 7 5 4 35 35 H 1.08997 * 109.87810 * 300.51359 * 12 11 9 36 36 H 1.08997 * 109.88334 * 61.67723 * 12 11 9 37 37 H 1.08999 * 110.92207 * 264.11288 * 13 12 11 38 38 H 1.08997 * 110.74242 * 140.85593 * 13 12 11 39 39 H 1.09000 * 109.47405 * 298.65478 * 16 14 13 40 40 H 1.09003 * 109.46757 * 58.65635 * 16 14 13 41 41 H 1.09000 * 109.47341 * 300.00353 * 17 16 14 42 42 H 1.09001 * 109.46978 * 60.00086 * 17 16 14 43 43 H 0.96999 * 119.99084 * 359.97438 * 18 17 16 44 44 H 0.97006 * 120.00257 * 179.97438 * 22 21 19 45 45 H 1.09004 * 110.36753 * 274.67301 * 27 11 9 46 46 H 1.08998 * 110.36427 * 36.88812 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3667 2.0971 -1.0982 5 6 2.7654 3.3320 -0.7075 6 17 3.3020 4.6108 -1.7516 7 6 2.6732 3.3911 0.6872 8 6 2.2056 2.1664 1.1148 9 6 1.9542 1.7720 2.5049 10 8 1.6384 0.6257 2.7646 11 7 2.0727 2.6790 3.4947 12 6 2.5523 4.0600 3.3385 13 6 2.5399 4.7105 4.7378 14 6 2.6003 3.4857 5.6886 15 1 3.6254 3.1360 5.8115 16 6 1.9691 3.8118 7.0436 17 6 2.0171 2.5727 7.9399 18 7 1.4121 2.8846 9.2372 19 6 1.3424 1.9227 10.2092 20 1 1.7330 0.9339 10.0194 21 6 0.7687 2.2181 11.4382 22 7 0.2921 3.4230 11.6694 23 14 0.6730 0.9056 12.7640 24 1 1.8975 0.9587 13.6023 25 1 -0.5201 1.1473 13.6145 26 1 0.5655 -0.4324 12.1290 27 6 1.7489 2.4487 4.9144 28 1 -0.3633 0.4347 0.9311 29 1 -0.3633 -1.0238 -0.0893 30 1 -0.3633 0.5891 -0.8421 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 2.3302 1.7418 -2.1174 34 1 2.9221 4.2366 1.3113 35 1 3.5660 4.0572 2.9379 36 1 1.8891 4.6095 2.6706 37 1 1.6219 5.2764 4.8959 38 1 3.4130 5.3484 4.8747 39 1 2.5219 4.6237 7.5161 40 1 0.9322 4.1148 6.8979 41 1 1.4642 1.7608 7.4673 42 1 3.0539 2.2696 8.0855 43 1 1.0616 3.7729 9.4077 44 1 -0.1092 3.6294 12.5281 45 1 0.6874 2.6195 5.0939 46 1 2.0242 1.4354 5.2067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484549195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:09 Heat of formation + Delta-G solvation = 20.195128 kcal Electronic energy + Delta-G solvation = -26726.794868 eV Core-core repulsion = 22871.469973 eV Total energy + Delta-G solvation = -3855.324895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93594 -39.85002 -37.77315 -36.71978 -35.27893 -34.41803 -33.01716 -31.14859 -30.16230 -29.53904 -29.38827 -26.96944 -24.90204 -23.92860 -23.24677 -21.84395 -21.39133 -21.01549 -20.08524 -19.45298 -17.58236 -17.10542 -16.59027 -16.30524 -15.85115 -15.31306 -14.93366 -14.73807 -14.64978 -14.41649 -13.94756 -13.71464 -13.61194 -13.32016 -13.27499 -13.10042 -13.01883 -12.82243 -12.64735 -12.46993 -12.06235 -11.74907 -11.70603 -11.60298 -11.32396 -11.12545 -11.06303 -10.82823 -10.65468 -10.45980 -10.35312 -10.13417 -9.97602 -9.65896 -9.06099 -8.88968 -8.84940 -8.54389 -6.90012 -5.74698 -3.03128 1.08110 1.75965 2.09811 2.35930 3.02166 3.06496 3.45310 3.50374 3.52245 4.13669 4.31238 4.42798 4.48608 4.57370 4.63969 4.67090 4.77677 4.81791 4.91867 5.06212 5.13905 5.21969 5.29202 5.38084 5.42238 5.52804 5.56475 5.58852 5.66490 5.74077 5.78457 5.81506 5.88873 5.98315 6.08502 6.16824 6.24335 6.37401 6.37805 6.43195 6.67168 6.85213 6.89190 7.28247 7.72416 7.91932 8.44589 9.55531 10.13853 10.48300 11.48329 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002059 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.090076 B =13597.972308 C =14793.556902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.399 5.399 4 C 0.032 3.968 5 C -0.124 4.124 6 Cl -0.051 7.051 7 C -0.142 4.142 8 C -0.028 4.028 9 C 0.601 3.399 10 O -0.544 6.544 11 N -0.604 5.604 12 C 0.092 3.908 13 C -0.130 4.130 14 C -0.094 4.094 15 H 0.086 0.914 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.113 3.887 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.075 0.925 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 1.137 -30.777 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.072 5.072 4 C -0.105 4.105 5 C -0.157 4.157 6 Cl -0.023 7.023 7 C -0.168 4.168 8 C -0.142 4.142 9 C 0.391 3.609 10 O -0.423 6.423 11 N -0.337 5.337 12 C -0.031 4.031 13 C -0.168 4.168 14 C -0.114 4.114 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.008 4.008 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.194 0.806 34 H 0.182 0.818 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.908 0.024 -30.664 31.055 hybrid contribution -0.115 -0.194 0.593 0.635 sum 4.793 -0.170 -30.071 30.451 Atomic orbital electron populations 1.22091 0.93646 1.03273 1.03205 1.22186 0.96269 0.78679 1.05497 1.44038 1.46509 1.12043 1.04652 1.21720 1.05028 0.91465 0.92315 1.19937 1.12903 0.91252 0.91601 1.98328 1.89114 1.49094 1.65757 1.21855 1.04351 0.97258 0.93369 1.19953 1.13796 0.92285 0.88125 1.16446 0.77716 0.84165 0.82611 1.90815 1.49499 1.18205 1.83812 1.48108 1.64662 1.12475 1.08428 1.22478 0.99569 0.82105 0.98905 1.22775 1.03691 0.97739 0.92603 1.22356 1.00073 0.94260 0.94705 0.89557 1.21687 1.00822 0.99763 0.93006 1.20687 0.96053 0.94164 0.86780 1.42365 1.71699 1.13448 1.10327 1.19241 1.32210 0.92834 0.92635 0.91201 1.24749 1.01570 0.96820 0.98029 1.69661 1.45633 1.19289 1.23765 0.86181 0.77116 0.80916 0.81960 1.21727 1.21770 1.20757 1.22462 0.99855 1.00865 0.77653 0.91346 0.90359 0.92203 0.86948 0.89018 0.80641 0.81787 0.90684 0.90610 0.90004 0.89650 0.91187 0.91539 0.96292 0.96436 0.78321 0.93548 0.90646 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.24 37.16 0.38 -0.85 16 2 C 0.09 0.73 6.22 -4.04 -0.03 0.70 16 3 N -0.40 -3.75 2.76 -112.82 -0.31 -4.06 16 4 C 0.03 0.25 11.35 -16.84 -0.19 0.06 16 5 C -0.12 -1.12 6.66 -39.93 -0.27 -1.39 16 6 Cl -0.05 -0.43 29.30 -51.86 -1.52 -1.95 16 7 C -0.14 -1.36 9.32 -39.09 -0.36 -1.73 16 8 C -0.03 -0.31 6.86 -81.99 -0.56 -0.87 16 9 C 0.60 7.89 7.80 -12.86 -0.10 7.79 16 10 O -0.54 -8.55 14.97 5.19 0.08 -8.48 16 11 N -0.60 -7.11 3.33 -172.07 -0.57 -7.69 16 12 C 0.09 0.80 4.98 -3.07 -0.02 0.78 16 13 C -0.13 -1.14 6.42 -24.90 -0.16 -1.30 16 14 C -0.09 -1.10 3.07 -88.47 -0.27 -1.37 16 15 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 16 C -0.11 -1.70 4.84 -26.73 -0.13 -1.83 16 17 C 0.15 2.98 6.11 -4.04 -0.02 2.96 16 18 N -0.73 -18.77 5.60 -59.91 -0.34 -19.10 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 23 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.11 1.45 5.59 -2.53 -0.01 1.44 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 1.09 6.46 -51.93 -0.34 0.76 16 32 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.16 1.30 4.42 -52.49 -0.23 1.07 16 35 H 0.08 0.57 7.00 -51.93 -0.36 0.20 16 36 H 0.08 0.57 6.85 -51.93 -0.36 0.22 16 37 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 46 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -33.51 386.07 -10.13 -43.64 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.00 Total: 5.01 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.99 Total: -3.09 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.50 Total: -58.64 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.51 -10.13 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484549195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.840 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds