Wall clock time and date at job start Sat Apr 11 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46904 * 2 1 4 4 C 1.35626 * 125.67797 * 265.57342 * 3 2 1 5 5 C 1.35519 * 108.85159 * 180.29448 * 4 3 2 6 6 Cl 1.73602 * 126.07232 * 179.70650 * 5 4 3 7 7 C 1.39888 * 107.85229 * 359.73180 * 5 4 3 8 8 C 1.37642 * 125.67318 * 85.40977 * 3 2 1 9 9 C 1.46667 * 126.22408 * 359.96534 * 8 3 2 10 10 O 1.21694 * 120.00221 * 5.57669 * 9 8 3 11 11 N 1.34774 * 119.99737 * 185.57409 * 9 8 3 12 12 C 1.47027 * 125.65246 * 354.95624 * 11 9 8 13 13 C 1.54317 * 107.27358 * 178.99495 * 12 11 9 14 14 C 1.55160 * 102.94200 * 337.80802 * 13 12 11 15 15 H 1.09004 * 111.00495 * 277.38813 * 14 13 12 16 16 C 1.53004 * 111.00213 * 153.57812 * 14 13 12 17 17 C 1.53003 * 109.46915 * 178.17968 * 16 14 13 18 18 N 1.46497 * 109.47173 * 179.97438 * 17 16 14 19 19 C 1.36928 * 120.00339 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00117 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00443 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00035 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00166 * 180.27257 * 21 19 18 24 24 H 1.48499 * 109.47032 * 269.72073 * 23 21 19 25 25 H 1.48500 * 109.46876 * 29.72157 * 23 21 19 26 26 H 1.48502 * 109.47103 * 149.72318 * 23 21 19 27 27 C 1.47466 * 125.62770 * 174.98046 * 11 9 8 28 28 H 1.08998 * 109.47346 * 295.01895 * 1 2 3 29 29 H 1.09009 * 109.47092 * 55.01902 * 1 2 3 30 30 H 1.08995 * 109.47345 * 175.01739 * 1 2 3 31 31 H 1.08993 * 109.47253 * 239.99943 * 2 1 3 32 32 H 1.09002 * 109.47102 * 120.00004 * 2 1 3 33 33 H 1.07998 * 125.57274 * 0.05589 * 4 3 2 34 34 H 1.07998 * 126.45365 * 179.97438 * 7 5 4 35 35 H 1.09001 * 109.87557 * 59.57823 * 12 11 9 36 36 H 1.08999 * 110.01128 * 298.48806 * 12 11 9 37 37 H 1.09004 * 110.72088 * 219.44647 * 13 12 11 38 38 H 1.09004 * 110.72117 * 96.17136 * 13 12 11 39 39 H 1.08998 * 109.47328 * 58.17850 * 16 14 13 40 40 H 1.08999 * 109.47131 * 298.17594 * 16 14 13 41 41 H 1.09006 * 109.47048 * 60.00058 * 17 16 14 42 42 H 1.08999 * 109.46915 * 299.99758 * 17 16 14 43 43 H 0.97002 * 119.99668 * 359.97438 * 18 17 16 44 44 H 0.96999 * 120.00298 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.35306 * 85.23131 * 27 11 9 46 46 H 1.08999 * 110.40913 * 322.89450 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3621 2.0987 -1.0984 5 6 2.7721 3.3296 -0.7068 6 17 3.3190 4.6048 -1.7501 7 6 2.6768 3.3898 0.6875 8 6 2.2014 2.1679 1.1146 9 6 1.9437 1.7756 2.5041 10 8 1.6249 0.6303 2.7639 11 7 2.0599 2.6837 3.4932 12 6 2.5358 4.0659 3.3360 13 6 2.4742 4.7326 4.7264 14 6 1.4341 3.8642 5.4824 15 1 0.4173 4.1760 5.2434 16 6 1.6773 3.9077 6.9924 17 6 0.6073 3.0784 7.7053 18 7 0.8404 3.1195 9.1510 19 6 0.0034 2.4448 9.9990 20 1 -0.8290 1.8826 9.6021 21 6 0.2240 2.4842 11.3689 22 7 1.2380 3.1697 11.8528 23 14 -0.9135 1.5575 12.5252 24 1 -2.0311 2.4446 12.9365 25 1 -1.4590 0.3633 11.8312 26 1 -0.1545 1.1279 13.7272 27 6 1.7312 2.4548 4.9124 28 1 -0.3634 0.4346 0.9312 29 1 -0.3634 0.5892 -0.8421 30 1 -0.3634 -1.0237 -0.0893 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3200 1.7454 -2.1181 34 1 2.9287 4.2342 1.3120 35 1 1.8922 4.6023 2.6388 36 1 3.5622 4.0676 2.9692 37 1 2.1295 5.7635 4.6448 38 1 3.4454 4.6874 5.2192 39 1 1.6276 4.9400 7.3388 40 1 2.6624 3.4972 7.2137 41 1 0.6570 2.0461 7.3588 42 1 -0.3779 3.4890 7.4840 43 1 1.5882 3.6241 9.5075 44 1 1.3924 3.1969 12.8100 45 1 2.5793 2.0071 5.4306 46 1 0.8519 1.8168 5.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484549199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:11 Heat of formation + Delta-G solvation = 0.424807 kcal Electronic energy + Delta-G solvation = -26728.100153 eV Core-core repulsion = 22871.917953 eV Total energy + Delta-G solvation = -3856.182200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.65590 -40.75380 -38.79802 -37.36698 -36.89209 -35.24070 -34.43033 -32.77683 -30.95007 -30.63933 -30.18557 -28.28515 -26.15441 -25.04866 -24.36555 -22.99092 -22.42864 -21.81773 -21.18701 -20.22922 -19.15363 -18.31931 -17.50734 -17.34460 -16.66275 -16.58012 -16.15070 -15.76997 -15.47993 -15.40157 -15.19584 -15.13923 -14.85318 -14.39871 -14.31430 -14.11163 -13.81056 -13.74066 -13.63674 -13.28712 -13.06380 -12.98794 -12.82823 -12.75887 -12.39090 -12.29937 -12.24290 -12.16488 -11.99140 -11.82324 -11.67442 -11.55350 -11.37211 -11.09524 -10.93234 -9.82570 -9.75580 -9.24812 -9.00967 -7.96749 -5.25523 0.30274 1.10986 1.42728 1.46025 1.47904 1.56474 1.58289 2.17336 2.26195 2.54908 3.30201 3.36683 3.59771 3.66828 3.76964 3.80274 3.94459 4.04804 4.15429 4.17495 4.26935 4.33151 4.34648 4.45071 4.49549 4.55192 4.58379 4.69861 4.76218 4.79588 4.83141 4.90318 4.91508 4.96700 5.09881 5.12757 5.16841 5.27550 5.37871 5.43873 5.47000 5.49286 5.71869 6.03950 6.26471 6.38181 6.96999 7.32343 8.09001 8.32297 9.26757 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.002059 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.760054 B =13595.656533 C =14800.881663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.404 5.404 4 C 0.049 3.951 5 C -0.141 4.141 6 Cl -0.045 7.045 7 C -0.133 4.133 8 C -0.059 4.059 9 C 0.593 3.407 10 O -0.584 6.584 11 N -0.605 5.605 12 C 0.090 3.910 13 C -0.120 4.120 14 C -0.084 4.084 15 H 0.090 0.910 16 C -0.100 4.100 17 C 0.148 3.852 18 N -0.748 5.748 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.284 1.284 25 H -0.272 1.272 26 H -0.293 1.293 27 C 0.114 3.886 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.209 0.791 34 H 0.179 0.821 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.013 0.987 42 H 0.018 0.982 43 H 0.375 0.625 44 H 0.252 0.748 45 H 0.064 0.936 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 1.993 -33.402 33.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.077 5.077 4 C -0.089 4.089 5 C -0.174 4.174 6 Cl -0.016 7.016 7 C -0.159 4.159 8 C -0.172 4.172 9 C 0.384 3.616 10 O -0.467 6.467 11 N -0.337 5.337 12 C -0.032 4.032 13 C -0.157 4.157 14 C -0.104 4.104 15 H 0.109 0.891 16 C -0.138 4.138 17 C 0.022 3.978 18 N -0.391 5.391 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.211 1.211 25 H -0.197 1.197 26 H -0.219 1.219 27 C -0.008 4.008 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.226 0.774 34 H 0.196 0.804 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.048 0.947 -33.345 33.603 hybrid contribution -0.288 -0.390 1.212 1.305 sum 3.760 0.558 -32.133 32.357 Atomic orbital electron populations 1.22035 0.93584 1.04137 1.01785 1.22265 0.96293 0.78207 1.05961 1.44229 1.46514 1.12356 1.04593 1.22283 1.02552 0.90889 0.93132 1.20052 1.13598 0.92187 0.91553 1.98331 1.88729 1.49112 1.65442 1.22058 1.02851 0.96950 0.94021 1.19763 1.16371 0.93499 0.87570 1.16854 0.77185 0.83844 0.83691 1.90783 1.51406 1.19917 1.84549 1.48186 1.64277 1.13619 1.07603 1.22709 1.00820 0.80277 0.99369 1.22783 0.99798 1.00163 0.92997 1.22211 1.00987 0.93516 0.93703 0.89137 1.21522 0.98437 1.00655 0.93160 1.20869 0.96876 0.96954 0.83130 1.42597 1.33984 1.60635 1.01850 1.19626 1.06656 1.22973 0.88747 0.91020 1.25585 1.00434 1.02360 0.98483 1.69804 1.32419 1.47428 1.12233 0.85139 0.77934 0.78363 0.78327 1.21124 1.19716 1.21944 1.22320 1.00277 0.98487 0.79710 0.94703 0.91036 0.88849 0.85441 0.89505 0.77392 0.80439 0.88903 0.89072 0.87158 0.89540 0.90593 0.91823 0.96919 0.96355 0.79290 0.93897 0.91776 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 71.98 0.74 -1.54 16 2 C 0.09 1.36 6.21 86.38 0.54 1.89 16 3 N -0.40 -7.03 2.76 -510.88 -1.41 -8.45 16 4 C 0.05 0.65 11.35 83.48 0.95 1.60 16 5 C -0.14 -2.21 6.66 22.04 0.15 -2.06 16 6 Cl -0.04 -0.63 29.30 -2.72 -0.08 -0.71 16 7 C -0.13 -2.28 9.31 22.59 0.21 -2.07 16 8 C -0.06 -1.26 6.86 40.35 0.28 -0.99 16 9 C 0.59 15.95 7.80 86.44 0.67 16.62 16 10 O -0.58 -19.53 15.01 -4.33 -0.06 -19.60 16 11 N -0.61 -14.17 3.33 -816.40 -2.72 -16.89 16 12 C 0.09 1.36 4.99 86.73 0.43 1.79 16 13 C -0.12 -1.80 6.42 31.78 0.20 -1.60 16 14 C -0.08 -1.89 3.04 -9.40 -0.03 -1.92 16 15 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.10 -2.91 4.84 30.60 0.15 -2.77 16 17 C 0.15 5.93 6.14 86.38 0.53 6.46 16 18 N -0.75 -38.86 5.60 -343.45 -1.92 -40.79 16 19 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 22 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 23 Si 0.97 46.98 29.55 68.60 2.03 49.00 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 27 C 0.11 3.02 5.69 86.85 0.49 3.51 16 28 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.13 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.09 1.76 6.47 -2.39 -0.02 1.74 16 33 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.18 2.36 4.42 -2.91 -0.01 2.35 16 35 H 0.09 1.14 6.72 -2.39 -0.02 1.13 16 36 H 0.09 1.13 7.11 -2.39 -0.02 1.11 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.27 8.04 -2.38 -0.02 1.25 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 41 H 0.01 0.53 7.60 -2.38 -0.02 0.51 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.38 20.39 7.67 -92.71 -0.71 19.68 16 44 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.06 1.81 7.96 -2.39 -0.02 1.79 16 46 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 Total: -1.00 -74.32 386.32 3.01 -71.31 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.28 Total: 24.26 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.62 Total: 1.49 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.77 Total: -125.75 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.06 Total: -19.60 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -74.32 3.01 -71.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484549199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.730 kcal (2) G-P(sol) polarization free energy of solvation -74.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds