Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.87892 * 2 1 4 4 C 1.54328 * 109.88099 * 238.82519 * 2 1 3 5 5 H 1.09003 * 110.71741 * 336.75788 * 4 2 1 6 6 N 1.46900 * 110.71974 * 100.02705 * 4 2 1 7 7 C 1.46898 * 111.00176 * 205.00100 * 6 4 2 8 8 C 1.50694 * 109.47340 * 180.02562 * 7 6 4 9 9 C 1.35348 * 126.91588 * 95.01952 * 8 7 6 10 10 N 1.33770 * 106.50152 * 179.97438 * 9 8 7 11 11 N 1.28636 * 108.88113 * 0.02562 * 10 9 8 12 12 N 1.28712 * 110.18171 * 359.75537 * 11 10 9 13 13 C 1.46505 * 125.87206 * 180.23609 * 12 11 10 14 14 C 1.55154 * 102.94260 * 218.39436 * 4 2 1 15 15 C 1.54690 * 101.67905 * 35.33663 * 14 4 2 16 16 N 1.47020 * 109.88185 * 121.02397 * 2 1 3 17 17 C 1.34778 * 125.64655 * 298.31891 * 16 2 1 18 18 O 1.21282 * 120.00178 * 359.97438 * 17 16 2 19 19 C 1.50703 * 120.00172 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99871 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 0.28020 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.09006 * 109.47271 * 300.43452 * 1 2 3 30 30 H 1.09005 * 109.47294 * 60.43138 * 1 2 3 31 31 H 1.09002 * 109.47487 * 180.43502 * 1 2 3 32 32 H 1.00899 * 110.99299 * 81.04658 * 6 4 2 33 33 H 1.09008 * 109.47140 * 300.00534 * 7 6 4 34 34 H 1.08997 * 109.46913 * 60.00115 * 7 6 4 35 35 H 1.08003 * 126.74954 * 359.97438 * 9 8 7 36 36 H 1.08998 * 109.47293 * 270.17899 * 13 12 11 37 37 H 1.08996 * 109.46677 * 30.17338 * 13 12 11 38 38 H 1.08994 * 109.46903 * 150.17377 * 13 12 11 39 39 H 1.09002 * 111.00245 * 153.57869 * 14 4 2 40 40 H 1.08997 * 111.00434 * 277.42798 * 14 4 2 41 41 H 1.08997 * 110.39108 * 204.36150 * 15 14 4 42 42 H 1.09002 * 110.23605 * 82.11477 * 15 14 4 43 43 H 1.09005 * 109.47194 * 59.99652 * 19 17 16 44 44 H 1.09000 * 109.46904 * 299.99694 * 19 17 16 45 45 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 -1.2417 5 1 1.3049 -1.4481 -1.6163 6 7 2.4565 0.1955 -2.2907 7 6 2.3870 -0.4292 -3.6184 8 6 2.8058 0.5697 -4.6661 9 6 4.0408 0.7189 -5.1995 10 7 3.9540 1.7175 -6.0852 11 7 2.7454 2.1579 -6.0990 12 7 2.0217 1.4948 -5.2664 13 6 0.5949 1.7071 -5.0104 14 6 3.2874 -1.5153 -0.6904 15 6 2.8189 -1.8754 0.7392 16 7 2.0299 -0.7126 1.1848 17 6 1.8085 -0.3581 2.4661 18 8 1.1459 0.6262 2.7172 19 6 2.3851 -1.1841 3.5870 20 16 1.9158 -0.4561 5.1762 21 6 2.6991 -1.5890 6.2750 22 1 3.2591 -2.4241 5.8807 23 6 2.5973 -1.4077 7.6474 24 7 3.1821 -2.2544 8.4683 25 14 1.6234 0.0330 8.3295 26 1 2.5225 1.2028 8.4979 27 1 0.5293 0.3811 7.3877 28 1 1.0442 -0.3396 9.6452 29 1 -0.3634 0.5206 0.8861 30 1 -0.3634 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0078 32 1 3.3789 0.5631 -2.1118 33 1 3.0548 -1.2903 -3.6502 34 1 1.3653 -0.7545 -3.8138 35 1 4.9229 0.1445 -4.9575 36 1 0.4741 2.4364 -4.2094 37 1 0.1148 2.0788 -5.9156 38 1 0.1345 0.7642 -4.7158 39 1 3.4849 -2.4129 -1.2764 40 1 4.1653 -0.8700 -0.6592 41 1 3.6775 -2.0248 1.3939 42 1 2.1969 -2.7703 0.7179 43 1 3.4717 -1.2026 3.5029 44 1 1.9985 -2.2014 3.5246 45 1 3.1107 -2.1279 9.4274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486073070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = 72.823106 kcal Electronic energy + Delta-G solvation = -26546.589967 eV Core-core repulsion = 22727.883650 eV Total energy + Delta-G solvation = -3818.706317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.65543 -40.32994 -38.04515 -35.86505 -34.90929 -32.48681 -32.44163 -31.67944 -30.46984 -28.66854 -28.32810 -26.52836 -25.63852 -24.46567 -23.03236 -22.90459 -21.52541 -21.08209 -19.09312 -17.84974 -17.65207 -17.24131 -16.82583 -16.49823 -15.90845 -15.31692 -15.12689 -15.02728 -14.77522 -14.54645 -14.07928 -13.87440 -13.77887 -13.71885 -13.52271 -13.22862 -13.02302 -12.83826 -12.76702 -12.60312 -12.23651 -12.07296 -11.89956 -11.77896 -11.34632 -11.29219 -11.24399 -11.04775 -11.00505 -10.63198 -10.48532 -9.88105 -9.69270 -9.51608 -9.03248 -9.02555 -8.64167 -8.52577 -6.94883 -6.31453 -4.03401 1.11039 1.95665 2.16435 2.61878 2.91439 3.11531 3.31253 3.48447 3.51714 3.61842 3.85097 4.03381 4.13559 4.16706 4.30802 4.39103 4.50343 4.55521 4.58968 4.67579 4.79411 4.87342 4.90852 4.93962 5.02399 5.07615 5.15457 5.22469 5.29185 5.38441 5.41616 5.43051 5.59904 5.62183 5.73175 5.75401 5.89792 5.96977 6.11549 6.16001 6.30877 6.45362 6.69419 7.53626 7.91514 8.11409 8.38661 8.41304 9.14700 10.77672 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.001980 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.919887 B =14134.770723 C =14501.273282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 H 0.081 0.919 4 C 0.083 3.917 5 H 0.098 0.902 6 N -0.677 5.677 7 C 0.133 3.867 8 C -0.016 4.016 9 C -0.044 4.044 10 N -0.272 5.272 11 N -0.086 5.086 12 N -0.277 5.277 13 C 0.082 3.918 14 C -0.164 4.164 15 C 0.102 3.898 16 N -0.623 5.623 17 C 0.549 3.451 18 O -0.514 6.514 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.235 1.235 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.352 0.648 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 0.013 -28.446 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.099 0.901 4 C -0.028 4.028 5 H 0.116 0.884 6 N -0.309 5.309 7 C 0.002 3.998 8 C -0.149 4.149 9 C -0.203 4.203 10 N -0.136 5.136 11 N -0.066 5.066 12 N -0.071 5.071 13 C -0.059 4.059 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.360 5.360 17 C 0.337 3.663 18 O -0.388 6.388 19 C -0.269 4.269 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.159 1.159 28 H -0.199 1.199 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.172 0.828 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.205 0.795 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.755 2.897 -28.908 29.439 hybrid contribution 1.219 -2.193 1.153 2.761 sum -3.536 0.704 -27.755 27.988 Atomic orbital electron populations 1.22083 0.94495 1.01964 1.03044 1.21350 0.94670 0.96574 0.83104 0.90092 1.22699 0.96751 0.92435 0.90905 0.88427 1.60382 1.34528 1.35814 1.00157 1.20318 1.02213 0.91973 0.85256 1.22022 0.92145 0.98345 1.02411 1.23424 0.97694 1.00384 0.98808 1.75118 1.09676 1.10464 1.18391 1.78346 0.98217 1.18004 1.12037 1.47201 1.11419 1.22278 1.26182 1.22286 0.74123 1.04947 1.04559 1.23484 0.98626 1.01726 0.96556 1.22177 0.95806 0.89251 0.94913 1.48532 1.53745 1.28909 1.04860 1.19954 0.79877 0.85007 0.81463 1.90697 1.38703 1.26812 1.82594 1.23264 1.03982 1.02462 0.97153 1.84799 1.70920 1.40237 0.95573 1.22301 1.37966 1.13783 0.92829 0.89413 1.24716 0.94543 0.96247 0.95819 1.69940 1.42258 1.35909 1.03522 0.86734 0.82264 0.82740 0.80111 1.19203 1.15914 1.19926 0.90897 0.91827 0.92861 0.82784 0.91594 0.89396 0.79494 0.88475 0.88220 0.88318 0.89679 0.90119 0.90019 0.91151 0.88691 0.88611 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.10 37.15 0.34 -1.30 16 2 C 0.15 1.49 3.21 -66.95 -0.22 1.28 16 3 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 4 C 0.08 0.49 2.80 -65.88 -0.18 0.31 16 5 H 0.10 0.49 7.54 -51.93 -0.39 0.10 16 6 N -0.68 -3.51 6.30 -106.06 -0.67 -4.17 16 7 C 0.13 0.50 5.78 -4.98 -0.03 0.48 16 8 C -0.02 -0.10 6.51 -82.09 -0.53 -0.64 16 9 C -0.04 -0.35 11.99 -17.74 -0.21 -0.56 16 10 N -0.27 -3.07 12.41 30.23 0.38 -2.70 16 11 N -0.09 -0.93 13.16 60.35 0.79 -0.14 16 12 N -0.28 -2.07 3.74 -63.79 -0.24 -2.31 16 13 C 0.08 0.29 11.22 59.85 0.67 0.96 16 14 C -0.16 -0.92 6.65 -24.70 -0.16 -1.08 16 15 C 0.10 0.89 6.68 -2.65 -0.02 0.87 16 16 N -0.62 -7.78 3.07 -163.16 -0.50 -8.28 16 17 C 0.55 9.62 7.66 -10.98 -0.08 9.54 16 18 O -0.51 -10.87 14.90 5.56 0.08 -10.79 16 19 C -0.12 -2.25 5.17 36.01 0.19 -2.07 16 20 S -0.14 -3.55 18.54 -107.50 -1.99 -5.55 16 21 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 25 Si 0.86 21.62 27.74 -169.99 -4.72 16.91 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.24 -5.92 6.73 56.52 0.38 -5.54 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.07 1.01 6.89 -51.93 -0.36 0.66 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.35 1.95 8.20 -39.29 -0.32 1.63 16 33 H 0.07 0.17 8.14 -51.92 -0.42 -0.26 16 34 H 0.09 0.25 7.25 -51.93 -0.38 -0.13 16 35 H 0.19 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.10 0.14 7.22 -51.93 -0.37 -0.23 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 41 H 0.08 0.73 7.48 -51.93 -0.39 0.35 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.70 7.84 -51.91 -0.41 1.29 16 44 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -36.66 384.85 -7.14 -43.80 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.82 Total: -2.99 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.03 Total: -4.07 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.54 Total: -43.12 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.91 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.66 -7.14 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486073070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.627 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds