Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.87892 * 2 1 4 4 C 1.54328 * 109.88099 * 238.82519 * 2 1 3 5 5 H 1.09003 * 110.71741 * 336.75788 * 4 2 1 6 6 N 1.46900 * 110.71974 * 100.02705 * 4 2 1 7 7 C 1.46898 * 111.00176 * 205.00100 * 6 4 2 8 8 C 1.50694 * 109.47340 * 180.02562 * 7 6 4 9 9 C 1.35348 * 126.91588 * 95.01952 * 8 7 6 10 10 N 1.33770 * 106.50152 * 179.97438 * 9 8 7 11 11 N 1.28636 * 108.88113 * 0.02562 * 10 9 8 12 12 N 1.28712 * 110.18171 * 359.75537 * 11 10 9 13 13 C 1.46505 * 125.87206 * 180.23609 * 12 11 10 14 14 C 1.55154 * 102.94260 * 218.39436 * 4 2 1 15 15 C 1.54690 * 101.67905 * 35.33663 * 14 4 2 16 16 N 1.47020 * 109.88185 * 121.02397 * 2 1 3 17 17 C 1.34778 * 125.64655 * 298.31891 * 16 2 1 18 18 O 1.21282 * 120.00178 * 359.97438 * 17 16 2 19 19 C 1.50703 * 120.00172 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99871 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 0.28020 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.09006 * 109.47271 * 300.43452 * 1 2 3 30 30 H 1.09005 * 109.47294 * 60.43138 * 1 2 3 31 31 H 1.09002 * 109.47487 * 180.43502 * 1 2 3 32 32 H 1.00899 * 110.99299 * 81.04658 * 6 4 2 33 33 H 1.09008 * 109.47140 * 300.00534 * 7 6 4 34 34 H 1.08997 * 109.46913 * 60.00115 * 7 6 4 35 35 H 1.08003 * 126.74954 * 359.97438 * 9 8 7 36 36 H 1.08998 * 109.47293 * 270.17899 * 13 12 11 37 37 H 1.08996 * 109.46677 * 30.17338 * 13 12 11 38 38 H 1.08994 * 109.46903 * 150.17377 * 13 12 11 39 39 H 1.09002 * 111.00245 * 153.57869 * 14 4 2 40 40 H 1.08997 * 111.00434 * 277.42798 * 14 4 2 41 41 H 1.08997 * 110.39108 * 204.36150 * 15 14 4 42 42 H 1.09002 * 110.23605 * 82.11477 * 15 14 4 43 43 H 1.09005 * 109.47194 * 59.99652 * 19 17 16 44 44 H 1.09000 * 109.46904 * 299.99694 * 19 17 16 45 45 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 -1.2417 5 1 1.3049 -1.4481 -1.6163 6 7 2.4565 0.1955 -2.2907 7 6 2.3870 -0.4292 -3.6184 8 6 2.8058 0.5697 -4.6661 9 6 4.0408 0.7189 -5.1995 10 7 3.9540 1.7175 -6.0852 11 7 2.7454 2.1579 -6.0990 12 7 2.0217 1.4948 -5.2664 13 6 0.5949 1.7071 -5.0104 14 6 3.2874 -1.5153 -0.6904 15 6 2.8189 -1.8754 0.7392 16 7 2.0299 -0.7126 1.1848 17 6 1.8085 -0.3581 2.4661 18 8 1.1459 0.6262 2.7172 19 6 2.3851 -1.1841 3.5870 20 16 1.9158 -0.4561 5.1762 21 6 2.6991 -1.5890 6.2750 22 1 3.2591 -2.4241 5.8807 23 6 2.5973 -1.4077 7.6474 24 7 3.1821 -2.2544 8.4683 25 14 1.6234 0.0330 8.3295 26 1 2.5225 1.2028 8.4979 27 1 0.5293 0.3811 7.3877 28 1 1.0442 -0.3396 9.6452 29 1 -0.3634 0.5206 0.8861 30 1 -0.3634 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0078 32 1 3.3789 0.5631 -2.1118 33 1 3.0548 -1.2903 -3.6502 34 1 1.3653 -0.7545 -3.8138 35 1 4.9229 0.1445 -4.9575 36 1 0.4741 2.4364 -4.2094 37 1 0.1148 2.0788 -5.9156 38 1 0.1345 0.7642 -4.7158 39 1 3.4849 -2.4129 -1.2764 40 1 4.1653 -0.8700 -0.6592 41 1 3.6775 -2.0248 1.3939 42 1 2.1969 -2.7703 0.7179 43 1 3.4717 -1.2026 3.5029 44 1 1.9985 -2.2014 3.5246 45 1 3.1107 -2.1279 9.4274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486073070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = 44.674418 kcal Electronic energy + Delta-G solvation = -26547.810585 eV Core-core repulsion = 22727.883650 eV Total energy + Delta-G solvation = -3819.926935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.20923 -41.29250 -39.05243 -36.52732 -35.42895 -34.68056 -33.29152 -32.39718 -31.35458 -29.81242 -28.77015 -27.85455 -27.07360 -25.04735 -23.87116 -23.50858 -22.05517 -21.66984 -20.38671 -19.47563 -18.26522 -18.15048 -17.62853 -17.37297 -17.10785 -16.68839 -16.15648 -16.04806 -15.63079 -15.49862 -15.12540 -14.91128 -14.67070 -14.55877 -14.09814 -14.06808 -13.93872 -13.80709 -13.62270 -13.35378 -13.23456 -13.10831 -13.00422 -12.78069 -12.70547 -12.61902 -12.44963 -11.94672 -11.87997 -11.81598 -11.66382 -11.18078 -11.02322 -10.91126 -10.54360 -10.23531 -9.69721 -9.40410 -9.01372 -8.52473 -6.23443 0.59186 0.96270 1.30377 1.44689 1.51921 1.55509 1.56113 1.59259 2.05780 2.24089 2.67814 2.85693 3.09707 3.42788 3.48184 3.58736 3.74714 3.87676 3.99841 4.08978 4.16227 4.18370 4.26652 4.32572 4.37753 4.40036 4.44923 4.58068 4.59855 4.66831 4.72858 4.76375 4.79862 4.97070 5.04093 5.10655 5.14232 5.24851 5.31085 5.48784 5.66369 5.69888 5.96236 6.10264 6.28329 6.40588 6.92744 7.11584 7.52124 8.59723 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.001980 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.919887 B =14134.770723 C =14501.273282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 H 0.059 0.941 4 C 0.102 3.898 5 H 0.122 0.878 6 N -0.683 5.683 7 C 0.139 3.861 8 C -0.005 4.005 9 C -0.056 4.056 10 N -0.315 5.315 11 N -0.128 5.128 12 N -0.274 5.274 13 C 0.072 3.928 14 C -0.151 4.151 15 C 0.088 3.912 16 N -0.613 5.613 17 C 0.547 3.453 18 O -0.561 6.561 19 C -0.102 4.102 20 S -0.177 6.177 21 C -0.527 4.527 22 H 0.063 0.937 23 C 0.046 3.954 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.263 1.263 27 H -0.238 1.238 28 H -0.258 1.258 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.351 0.649 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.212 0.788 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 -1.316 -30.365 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.077 0.923 4 C -0.009 4.009 5 H 0.140 0.860 6 N -0.315 5.315 7 C 0.009 3.991 8 C -0.140 4.140 9 C -0.216 4.216 10 N -0.179 5.179 11 N -0.107 5.107 12 N -0.069 5.069 13 C -0.068 4.068 14 C -0.191 4.191 15 C -0.034 4.034 16 N -0.348 5.348 17 C 0.334 3.666 18 O -0.439 6.439 19 C -0.253 4.253 20 S 0.050 5.950 21 C -0.675 4.675 22 H 0.081 0.919 23 C -0.160 4.160 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.188 1.188 27 H -0.162 1.162 28 H -0.183 1.183 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.171 0.829 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.228 0.772 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.309 1.551 -30.891 31.383 hybrid contribution 1.425 -1.860 1.620 2.849 sum -3.884 -0.309 -29.271 29.529 Atomic orbital electron populations 1.22016 0.94580 1.02224 1.02148 1.21583 0.94673 0.96082 0.84015 0.92282 1.22514 0.97326 0.91907 0.89119 0.86013 1.60266 1.34667 1.35979 1.00593 1.20468 1.04001 0.91422 0.83250 1.22457 0.91474 0.97924 1.02112 1.23966 0.99339 0.99939 0.98317 1.75048 1.10407 1.12187 1.20251 1.78274 0.98665 1.19660 1.14136 1.47539 1.12468 1.21651 1.25195 1.22623 0.72429 1.06622 1.05099 1.23491 0.98149 1.03043 0.94388 1.22576 0.95593 0.88346 0.96916 1.48483 1.52767 1.29759 1.03771 1.19601 0.79772 0.84335 0.82864 1.90680 1.40984 1.28664 1.83616 1.23211 1.04873 1.02891 0.94298 1.84738 1.71010 1.40396 0.98905 1.22434 1.37627 1.13630 0.93808 0.91893 1.25549 0.95501 0.98658 0.96249 1.70014 1.43600 1.37558 1.04138 0.85881 0.80952 0.79750 0.79875 1.18792 1.16151 1.18258 0.95137 0.89419 0.91869 0.82939 0.89097 0.87430 0.77154 0.88313 0.87529 0.85549 0.86235 0.90187 0.90394 0.89373 0.87446 0.87221 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.10 71.98 0.66 -2.21 16 2 C 0.14 2.53 3.21 45.34 0.15 2.68 16 3 H 0.06 1.35 8.03 -2.39 -0.02 1.33 16 4 C 0.10 0.75 2.80 46.10 0.13 0.88 16 5 H 0.12 0.44 7.54 -2.39 -0.02 0.42 16 6 N -0.68 -4.27 6.30 -489.45 -3.08 -7.36 16 7 C 0.14 0.37 5.78 85.56 0.49 0.87 16 8 C -0.01 -0.05 6.51 41.35 0.27 0.22 16 9 C -0.06 -0.78 11.99 83.73 1.00 0.22 16 10 N -0.32 -7.07 12.41 -58.26 -0.72 -7.79 16 11 N -0.13 -2.75 13.16 37.02 0.49 -2.26 16 12 N -0.27 -3.62 3.74 -355.74 -1.33 -4.96 16 13 C 0.07 0.34 11.22 127.77 1.43 1.78 16 14 C -0.15 -0.97 6.65 31.91 0.21 -0.76 16 15 C 0.09 1.23 6.68 86.78 0.58 1.81 16 16 N -0.61 -14.21 3.07 -788.50 -2.42 -16.63 16 17 C 0.55 18.97 7.66 87.66 0.67 19.64 16 18 O -0.56 -24.19 14.90 -3.04 -0.05 -24.23 16 19 C -0.10 -3.85 5.17 71.24 0.37 -3.48 16 20 S -0.18 -8.96 18.54 -56.49 -1.05 -10.01 16 21 C -0.53 -30.53 10.04 67.96 0.68 -29.84 16 22 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 23 C 0.05 2.69 5.50 84.86 0.47 3.15 16 24 N -0.92 -55.32 13.97 21.65 0.30 -55.01 16 25 Si 0.91 44.92 27.74 68.60 1.90 46.83 16 26 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.24 -11.70 6.73 99.48 0.67 -11.03 16 28 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.03 0.84 6.89 -2.38 -0.02 0.82 16 30 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.35 2.66 8.20 -89.69 -0.74 1.93 16 33 H 0.09 -0.11 8.14 -2.38 -0.02 -0.13 16 34 H 0.11 -0.05 7.25 -2.39 -0.02 -0.07 16 35 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.13 -0.12 7.22 -2.39 -0.02 -0.14 16 39 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.08 0.59 7.77 -2.39 -0.02 0.57 16 41 H 0.08 1.19 7.48 -2.39 -0.02 1.17 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 3.77 7.84 -2.39 -0.02 3.75 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -84.52 384.85 1.39 -83.13 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 0.23 Total: 3.34 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 7.11 Total: -5.05 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -6.77 Total: -94.01 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -84.52 1.39 -83.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486073070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.807 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds