Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30832 * 125.96425 * 2 1 4 4 C 1.33244 * 109.83152 * 180.12902 * 3 2 1 5 5 C 1.50699 * 125.52891 * 179.86008 * 4 3 2 6 6 N 1.46902 * 109.46811 * 269.71132 * 5 4 3 7 7 C 1.46849 * 110.99983 * 66.04321 * 6 5 4 8 8 C 1.53038 * 109.52243 * 185.83707 * 7 6 5 9 9 C 1.53119 * 109.28082 * 300.82303 * 8 7 6 10 10 C 1.53118 * 109.15841 * 57.65504 * 9 8 7 11 11 H 1.08996 * 109.50190 * 62.32806 * 10 9 8 12 12 N 1.46504 * 109.49993 * 182.40666 * 10 9 8 13 13 C 1.34779 * 119.99957 * 274.99601 * 12 10 9 14 14 O 1.21281 * 119.99517 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00222 * 179.97438 * 13 12 10 16 16 S 1.81002 * 109.47406 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.27912 * 19 17 16 21 21 Si 1.86800 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00278 * 21 19 17 24 24 H 1.48497 * 109.46870 * 240.00088 * 21 19 17 25 25 C 1.46846 * 111.00012 * 190.25625 * 6 5 4 26 26 N 1.30717 * 108.94793 * 359.58629 * 4 3 2 27 27 N 1.34436 * 125.96371 * 179.67450 * 2 1 3 28 28 H 0.97008 * 126.81837 * 0.06655 * 27 2 1 29 29 H 1.09005 * 109.47143 * 270.30556 * 1 2 3 30 30 H 1.09000 * 109.47051 * 30.29883 * 1 2 3 31 31 H 1.08998 * 109.47131 * 150.30234 * 1 2 3 32 32 H 1.09002 * 109.47383 * 149.71009 * 5 4 3 33 33 H 1.09000 * 109.47332 * 29.70547 * 5 4 3 34 34 H 1.09004 * 109.46207 * 65.82297 * 7 6 5 35 35 H 1.08997 * 109.46464 * 305.85601 * 7 6 5 36 36 H 1.09002 * 109.50082 * 180.88070 * 8 7 6 37 37 H 1.08998 * 109.53597 * 60.78394 * 8 7 6 38 38 H 1.09009 * 109.52190 * 297.74948 * 9 8 7 39 39 H 1.08994 * 109.51998 * 177.56127 * 9 8 7 40 40 H 0.96999 * 120.00526 * 94.99866 * 12 10 9 41 41 H 1.09005 * 109.46836 * 60.00415 * 15 13 12 42 42 H 1.08996 * 109.47837 * 300.00838 * 15 13 12 43 43 H 0.97001 * 120.00425 * 359.71679 * 20 19 17 44 44 H 1.08994 * 109.46533 * 54.14349 * 25 6 5 45 45 H 1.09004 * 109.46340 * 294.17384 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0028 5 6 4.7372 1.6235 -0.0067 6 7 5.1221 1.9203 -1.3930 7 6 4.0713 2.6828 -2.0792 8 6 4.4400 2.8476 -3.5553 9 6 5.7807 3.5794 -3.6629 10 6 6.8472 2.7894 -2.8994 11 1 6.9685 1.8070 -3.3557 12 7 8.1204 3.5124 -2.9491 13 6 8.9442 3.3547 -4.0041 14 8 8.6312 2.6146 -4.9125 15 6 10.2536 4.0988 -4.0555 16 16 11.1258 3.6802 -5.5853 17 6 12.5772 4.6596 -5.3878 18 1 12.7004 5.2707 -4.5059 19 6 13.5627 4.6448 -6.3651 20 7 13.4105 3.9034 -7.4420 21 14 15.1011 5.6836 -6.1560 22 1 15.0269 6.4252 -4.8715 23 1 16.2964 4.8024 -6.1500 24 1 15.2032 6.6487 -7.2800 25 6 6.4088 2.6264 -1.4423 26 7 3.6195 -0.6169 0.0043 27 7 2.2964 -1.0881 0.0062 28 1 2.0093 -2.0147 0.0105 29 1 -0.3634 0.0055 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8927 -0.5091 32 1 5.5740 1.1534 0.5100 33 1 4.4698 2.5495 0.5022 34 1 3.9750 3.6653 -1.6171 35 1 3.1242 2.1494 -1.9987 36 1 3.6675 3.4270 -4.0609 37 1 4.5228 1.8661 -4.0221 38 1 5.6872 4.5762 -3.2316 39 1 6.0682 3.6606 -4.7111 40 1 8.3706 4.1046 -2.2227 41 1 10.8658 3.8165 -3.1989 42 1 10.0633 5.1717 -4.0281 43 1 12.6115 3.3642 -7.5508 44 1 7.1593 2.0520 -0.8993 45 1 6.3015 3.6092 -0.9832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490426963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = 42.237440 kcal Electronic energy + Delta-G solvation = -26178.681238 eV Core-core repulsion = 22358.648627 eV Total energy + Delta-G solvation = -3820.032611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.56209 -39.94232 -38.47657 -35.18534 -33.63976 -32.80332 -32.52425 -32.50630 -30.53385 -28.96012 -28.30838 -27.17148 -24.83156 -23.64668 -23.09893 -21.72624 -20.74784 -20.29031 -19.97812 -18.33281 -18.26089 -16.86724 -16.58063 -16.14981 -15.45467 -15.40465 -15.04258 -14.77034 -14.61742 -14.43947 -14.02321 -13.85123 -13.81038 -13.53059 -13.37883 -13.22284 -12.99768 -12.86388 -12.36726 -12.31987 -12.17837 -12.02137 -11.81516 -11.50940 -11.05122 -10.93217 -10.88288 -10.69174 -10.49067 -10.42674 -10.19337 -9.89715 -9.56377 -9.44092 -9.00288 -8.90882 -8.68329 -8.19243 -6.64360 -6.60335 -3.97811 1.16839 2.19447 2.33984 2.91704 3.03954 3.34231 3.40700 3.41942 3.54030 3.59722 3.90742 4.10302 4.26541 4.33316 4.54266 4.70453 4.75279 4.81138 4.87492 4.93402 5.06918 5.10805 5.15899 5.18149 5.23968 5.24410 5.33662 5.42880 5.50187 5.56224 5.71627 5.75859 5.81697 5.83767 5.94962 5.98431 6.04472 6.16854 6.23532 6.53128 6.59536 6.67449 6.79173 7.67452 7.69030 7.95293 8.52300 8.56966 9.29221 10.83780 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.001733 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.654821 B =16152.428135 C =16260.529513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.538 5.538 4 C 0.238 3.762 5 C 0.150 3.850 6 N -0.529 5.529 7 C 0.055 3.945 8 C -0.113 4.113 9 C -0.132 4.132 10 C 0.152 3.848 11 H 0.097 0.903 12 N -0.734 5.734 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.131 4.131 16 S -0.116 6.116 17 C -0.607 4.607 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.885 5.885 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.054 3.946 26 N -0.295 5.295 27 N -0.484 5.484 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.084 0.916 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.759 -5.268 19.660 34.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 N -0.268 5.268 4 C -0.045 4.045 5 C 0.020 3.980 6 N -0.255 5.255 7 C -0.072 4.072 8 C -0.152 4.152 9 C -0.171 4.171 10 C 0.047 3.953 11 H 0.115 0.885 12 N -0.387 5.387 13 C 0.319 3.681 14 O -0.389 6.389 15 C -0.282 4.282 16 S 0.110 5.890 17 C -0.756 4.756 18 H 0.085 0.915 19 C -0.176 4.176 20 N -0.520 5.520 21 Si 0.917 3.083 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.074 4.074 26 N -0.124 5.124 27 N -0.202 5.202 28 H 0.286 0.714 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -26.209 -6.571 17.171 32.015 hybrid contribution -1.372 0.913 2.693 3.157 sum -27.581 -5.659 19.864 34.458 Atomic orbital electron populations 1.20400 0.83631 1.05115 1.04564 1.24393 0.96614 0.82906 0.95837 1.70363 1.01412 1.29576 1.25435 1.23945 0.92829 0.90078 0.97636 1.20215 0.91994 0.95444 0.90395 1.61672 1.02955 1.47117 1.13755 1.22206 0.94597 0.96084 0.94359 1.21539 0.96799 1.01416 0.95405 1.22003 0.94511 0.98705 1.01879 1.20795 0.82774 0.97223 0.94554 0.88505 1.45966 1.20103 1.48982 1.23697 1.20250 0.84820 0.81594 0.81434 1.90706 1.74868 1.37025 1.36320 1.23317 0.96159 1.02798 1.05917 1.84830 1.20748 1.62129 1.21288 1.23772 1.05987 1.33583 1.12213 0.91541 1.26053 1.01821 0.97815 0.91871 1.70731 1.29955 1.24738 1.26556 0.83247 0.74136 0.75400 0.75562 1.21416 1.20901 1.20897 1.22259 0.91116 0.97275 0.96780 1.78086 0.96291 1.12421 1.25569 1.48044 1.04431 1.10098 1.57649 0.71441 0.88990 0.88291 0.89820 0.88171 0.91621 0.94404 0.90031 0.91134 0.90984 0.92057 0.90774 0.76948 0.88969 0.89001 0.90909 0.89715 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.28 1.97 8.24 -155.69 -1.28 0.69 16 3 N -0.54 -5.30 10.30 -8.16 -0.08 -5.39 16 4 C 0.24 2.52 6.77 -156.85 -1.06 1.46 16 5 C 0.15 1.36 5.59 -4.98 -0.03 1.34 16 6 N -0.53 -5.39 4.65 -236.11 -1.10 -6.48 16 7 C 0.06 0.55 5.31 -3.83 -0.02 0.53 16 8 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 9 C -0.13 -1.58 5.58 -26.61 -0.15 -1.73 16 10 C 0.15 1.90 2.62 -67.85 -0.18 1.72 16 11 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 12 N -0.73 -9.84 5.08 -53.73 -0.27 -10.11 16 13 C 0.53 9.98 7.81 -10.99 -0.09 9.90 16 14 O -0.52 -11.77 15.53 5.56 0.09 -11.69 16 15 C -0.13 -2.66 6.16 36.00 0.22 -2.44 16 16 S -0.12 -3.17 19.60 -107.50 -2.11 -5.27 16 17 C -0.61 -17.68 9.50 30.94 0.29 -17.39 16 18 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 19 C 0.03 1.02 5.49 -17.43 -0.10 0.93 16 20 N -0.89 -27.81 13.67 55.49 0.76 -27.05 16 21 Si 1.09 25.27 29.92 -169.99 -5.09 20.19 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.05 0.52 4.93 -3.83 -0.02 0.50 16 26 N -0.29 -3.22 12.80 32.42 0.41 -2.81 16 27 N -0.48 -3.49 7.45 32.62 0.24 -3.24 16 28 H 0.44 1.58 8.96 -182.33 -1.63 -0.06 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 32 H 0.10 0.82 7.98 -51.93 -0.41 0.40 16 33 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 41 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.28 8.94 7.13 -40.82 -0.29 8.65 16 44 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -38.50 385.08 -11.64 -50.14 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.11 Total: 1.57 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.19 Total: -5.65 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.04 Total: -55.08 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.09 Total: 20.19 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.50 -11.64 -50.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490426963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.375 kcal (2) G-P(sol) polarization free energy of solvation -38.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds