Wall clock time and date at job start Sat Apr 11 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30832 * 125.96425 * 2 1 4 4 C 1.33244 * 109.83152 * 180.12902 * 3 2 1 5 5 C 1.50699 * 125.52891 * 179.86008 * 4 3 2 6 6 N 1.46902 * 109.46811 * 269.71132 * 5 4 3 7 7 C 1.46849 * 110.99983 * 66.04321 * 6 5 4 8 8 C 1.53038 * 109.52243 * 185.83707 * 7 6 5 9 9 C 1.53119 * 109.28082 * 300.82303 * 8 7 6 10 10 C 1.53118 * 109.15841 * 57.65504 * 9 8 7 11 11 H 1.08996 * 109.50190 * 62.32806 * 10 9 8 12 12 N 1.46504 * 109.49993 * 182.40666 * 10 9 8 13 13 C 1.34779 * 119.99957 * 274.99601 * 12 10 9 14 14 O 1.21281 * 119.99517 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00222 * 179.97438 * 13 12 10 16 16 S 1.81002 * 109.47406 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.27912 * 19 17 16 21 21 Si 1.86800 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00278 * 21 19 17 24 24 H 1.48497 * 109.46870 * 240.00088 * 21 19 17 25 25 C 1.46846 * 111.00012 * 190.25625 * 6 5 4 26 26 N 1.30717 * 108.94793 * 359.58629 * 4 3 2 27 27 N 1.34436 * 125.96371 * 179.67450 * 2 1 3 28 28 H 0.97008 * 126.81837 * 0.06655 * 27 2 1 29 29 H 1.09005 * 109.47143 * 270.30556 * 1 2 3 30 30 H 1.09000 * 109.47051 * 30.29883 * 1 2 3 31 31 H 1.08998 * 109.47131 * 150.30234 * 1 2 3 32 32 H 1.09002 * 109.47383 * 149.71009 * 5 4 3 33 33 H 1.09000 * 109.47332 * 29.70547 * 5 4 3 34 34 H 1.09004 * 109.46207 * 65.82297 * 7 6 5 35 35 H 1.08997 * 109.46464 * 305.85601 * 7 6 5 36 36 H 1.09002 * 109.50082 * 180.88070 * 8 7 6 37 37 H 1.08998 * 109.53597 * 60.78394 * 8 7 6 38 38 H 1.09009 * 109.52190 * 297.74948 * 9 8 7 39 39 H 1.08994 * 109.51998 * 177.56127 * 9 8 7 40 40 H 0.96999 * 120.00526 * 94.99866 * 12 10 9 41 41 H 1.09005 * 109.46836 * 60.00415 * 15 13 12 42 42 H 1.08996 * 109.47837 * 300.00838 * 15 13 12 43 43 H 0.97001 * 120.00425 * 359.71679 * 20 19 17 44 44 H 1.08994 * 109.46533 * 54.14349 * 25 6 5 45 45 H 1.09004 * 109.46340 * 294.17384 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0028 5 6 4.7372 1.6235 -0.0067 6 7 5.1221 1.9203 -1.3930 7 6 4.0713 2.6828 -2.0792 8 6 4.4400 2.8476 -3.5553 9 6 5.7807 3.5794 -3.6629 10 6 6.8472 2.7894 -2.8994 11 1 6.9685 1.8070 -3.3557 12 7 8.1204 3.5124 -2.9491 13 6 8.9442 3.3547 -4.0041 14 8 8.6312 2.6146 -4.9125 15 6 10.2536 4.0988 -4.0555 16 16 11.1258 3.6802 -5.5853 17 6 12.5772 4.6596 -5.3878 18 1 12.7004 5.2707 -4.5059 19 6 13.5627 4.6448 -6.3651 20 7 13.4105 3.9034 -7.4420 21 14 15.1011 5.6836 -6.1560 22 1 15.0269 6.4252 -4.8715 23 1 16.2964 4.8024 -6.1500 24 1 15.2032 6.6487 -7.2800 25 6 6.4088 2.6264 -1.4423 26 7 3.6195 -0.6169 0.0043 27 7 2.2964 -1.0881 0.0062 28 1 2.0093 -2.0147 0.0105 29 1 -0.3634 0.0055 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8927 -0.5091 32 1 5.5740 1.1534 0.5100 33 1 4.4698 2.5495 0.5022 34 1 3.9750 3.6653 -1.6171 35 1 3.1242 2.1494 -1.9987 36 1 3.6675 3.4270 -4.0609 37 1 4.5228 1.8661 -4.0221 38 1 5.6872 4.5762 -3.2316 39 1 6.0682 3.6606 -4.7111 40 1 8.3706 4.1046 -2.2227 41 1 10.8658 3.8165 -3.1989 42 1 10.0633 5.1717 -4.0281 43 1 12.6115 3.3642 -7.5508 44 1 7.1593 2.0520 -0.8993 45 1 6.3015 3.6092 -0.9832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490426963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:02 Heat of formation + Delta-G solvation = 12.776022 kcal Electronic energy + Delta-G solvation = -26179.958781 eV Core-core repulsion = 22358.648627 eV Total energy + Delta-G solvation = -3821.310154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.16765 -41.13791 -39.62653 -36.24347 -34.74337 -34.55711 -33.36749 -33.27318 -31.83630 -29.76859 -29.25138 -27.88362 -27.06693 -24.52317 -24.02020 -22.35419 -21.78646 -21.30475 -20.94814 -20.36030 -18.86811 -18.04934 -17.83151 -17.16902 -16.53835 -16.47535 -16.15765 -16.04564 -15.71949 -15.49168 -15.22499 -15.00261 -14.85138 -14.71712 -14.46366 -14.05387 -13.94861 -13.66656 -13.61870 -13.58383 -13.53986 -12.94613 -12.75446 -12.69240 -12.43491 -11.97179 -11.91786 -11.89478 -11.66037 -11.53379 -11.13089 -11.11034 -11.09345 -11.01192 -10.52041 -10.30942 -10.16225 -9.41630 -8.92178 -8.86121 -6.27041 0.57638 1.19359 1.51992 1.52675 1.62699 1.66699 1.74760 1.79115 2.14231 2.34781 2.89759 3.03146 3.11950 3.17380 3.53780 3.62649 3.78996 3.87776 3.91827 3.98123 4.14169 4.19036 4.28004 4.36709 4.39018 4.43322 4.53227 4.57445 4.66592 4.70418 4.74158 4.84607 4.90720 5.00599 5.05924 5.17656 5.24094 5.27551 5.34477 5.40981 5.65825 5.90708 5.98284 6.15372 6.20080 6.45307 7.07007 7.07689 7.18530 8.51394 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.001733 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.654821 B =16152.428135 C =16260.529513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.565 5.565 4 C 0.227 3.773 5 C 0.152 3.848 6 N -0.545 5.545 7 C 0.065 3.935 8 C -0.107 4.107 9 C -0.127 4.127 10 C 0.153 3.847 11 H 0.062 0.938 12 N -0.705 5.705 13 C 0.536 3.464 14 O -0.565 6.565 15 C -0.108 4.108 16 S -0.198 6.198 17 C -0.613 4.613 18 H 0.076 0.924 19 C -0.020 4.020 20 N -0.915 5.915 21 Si 1.142 2.858 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.064 3.936 26 N -0.334 5.334 27 N -0.478 5.478 28 H 0.454 0.546 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.418 0.582 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.261 0.739 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.883 -3.767 22.491 36.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.296 5.296 4 C -0.056 4.056 5 C 0.022 3.978 6 N -0.271 5.271 7 C -0.063 4.063 8 C -0.146 4.146 9 C -0.165 4.165 10 C 0.048 3.952 11 H 0.080 0.920 12 N -0.359 5.359 13 C 0.322 3.678 14 O -0.443 6.443 15 C -0.260 4.260 16 S 0.028 5.972 17 C -0.760 4.760 18 H 0.094 0.906 19 C -0.223 4.223 20 N -0.550 5.550 21 Si 0.960 3.040 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.064 4.064 26 N -0.165 5.165 27 N -0.198 5.198 28 H 0.302 0.698 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.389 -5.078 20.070 34.333 hybrid contribution -1.218 0.376 1.895 2.284 sum -28.606 -4.702 21.965 36.372 Atomic orbital electron populations 1.20631 0.80305 1.06413 1.06041 1.25230 0.98195 0.82141 0.93679 1.70366 1.01427 1.30939 1.26872 1.24211 0.93591 0.90196 0.97635 1.20257 0.91987 0.95880 0.89627 1.61587 1.03128 1.47613 1.14815 1.22085 0.94143 0.96556 0.93507 1.21491 0.96447 1.00317 0.96333 1.21931 0.94883 0.99802 0.99917 1.20830 0.82177 0.95437 0.96792 0.92017 1.45656 1.19456 1.48285 1.22475 1.20006 0.84821 0.80979 0.82041 1.90701 1.75785 1.39257 1.38519 1.23221 0.96392 1.04189 1.02178 1.85101 1.22115 1.63009 1.26926 1.24094 1.06233 1.33264 1.12419 0.90596 1.27847 1.05270 0.98095 0.91074 1.70856 1.29584 1.26329 1.28219 0.82643 0.70220 0.74175 0.76930 1.18620 1.20044 1.20030 1.22153 0.91139 0.98883 0.94269 1.77977 0.98514 1.12970 1.26993 1.47988 1.03454 1.11073 1.57320 0.69807 0.87219 0.88146 0.87335 0.87551 0.90276 0.93037 0.90832 0.89665 0.93078 0.90044 0.93946 0.74465 0.86861 0.86879 0.92848 0.88939 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.16 10.51 71.23 0.75 0.59 16 2 C 0.29 3.58 8.24 138.22 1.14 4.72 16 3 N -0.56 -10.52 10.30 -179.73 -1.85 -12.37 16 4 C 0.23 4.63 6.77 138.63 0.94 5.57 16 5 C 0.15 2.54 5.59 85.56 0.48 3.02 16 6 N -0.55 -10.35 4.65 -900.92 -4.19 -14.53 16 7 C 0.06 1.18 5.31 86.33 0.46 1.64 16 8 C -0.11 -2.20 6.09 30.65 0.19 -2.02 16 9 C -0.13 -2.93 5.58 30.67 0.17 -2.76 16 10 C 0.15 3.70 2.62 45.04 0.12 3.81 16 11 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 12 N -0.70 -17.73 5.08 -442.29 -2.25 -19.97 16 13 C 0.54 19.90 7.81 87.65 0.68 20.59 16 14 O -0.56 -26.70 15.53 -3.03 -0.05 -26.75 16 15 C -0.11 -4.30 6.16 71.23 0.44 -3.86 16 16 S -0.20 -11.05 19.60 -56.49 -1.11 -12.16 16 17 C -0.61 -35.61 9.50 67.96 0.65 -34.96 16 18 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 19 C -0.02 -1.16 5.49 84.86 0.47 -0.70 16 20 N -0.91 -58.72 13.67 21.65 0.30 -58.43 16 21 Si 1.14 49.83 29.92 68.60 2.05 51.88 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.06 1.08 4.93 86.33 0.43 1.50 16 26 N -0.33 -7.20 12.80 -51.33 -0.66 -7.86 16 27 N -0.48 -6.45 7.45 -50.71 -0.38 -6.82 16 28 H 0.45 2.78 8.96 -213.09 -1.91 0.87 16 29 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.11 1.59 7.98 -2.39 -0.02 1.57 16 33 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.50 6.44 -2.39 -0.02 1.49 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.42 7.17 8.60 -92.71 -0.80 6.37 16 41 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 42 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 43 H 0.26 17.44 7.13 -92.71 -0.66 16.78 16 44 H 0.09 1.46 8.01 -2.39 -0.02 1.44 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -87.67 385.08 -2.80 -90.47 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -1.58 Total: 19.39 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 6.90 Total: -2.86 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -9.02 Total: -119.98 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.11 Total: -12.16 kcal Total: -87.67 -2.80 -90.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490426963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.249 kcal (2) G-P(sol) polarization free energy of solvation -87.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds