Wall clock time and date at job start Sat Apr 11 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47403 * 2 1 4 4 N 1.46500 * 109.47086 * 120.00290 * 2 1 3 5 5 C 1.35313 * 125.86935 * 275.32430 * 4 2 1 6 6 C 1.35351 * 106.17833 * 180.11426 * 5 4 2 7 7 C 1.50696 * 126.75340 * 179.85198 * 6 5 4 8 8 N 1.46898 * 109.47016 * 94.71322 * 7 6 5 9 9 C 1.47480 * 111.00405 * 265.97353 * 8 7 6 10 10 C 1.53515 * 87.93275 * 221.29694 * 9 8 7 11 11 N 1.46497 * 114.16947 * 272.37570 * 10 9 8 12 12 C 1.34774 * 119.99817 * 248.84023 * 11 10 9 13 13 O 1.21280 * 120.00018 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00118 * 180.02562 * 12 11 10 15 15 S 1.80995 * 109.47086 * 179.97438 * 14 12 11 16 16 C 1.76202 * 99.99692 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00229 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99946 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99688 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47379 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46931 * 120.00179 * 20 18 16 23 23 H 1.48493 * 109.47198 * 239.99976 * 20 18 16 24 24 C 1.47486 * 110.99952 * 169.99989 * 8 7 6 25 25 N 1.33777 * 106.49291 * 359.59360 * 6 5 4 26 26 N 1.28630 * 108.88610 * 0.25977 * 25 6 5 27 27 H 1.09002 * 109.47333 * 300.00192 * 1 2 3 28 28 H 1.09008 * 109.46770 * 59.99590 * 1 2 3 29 29 H 1.08995 * 109.47663 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47333 * 239.99808 * 2 1 3 31 31 H 1.08995 * 109.47099 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47219 * 300.00399 * 3 2 1 33 33 H 1.09001 * 109.46740 * 60.00346 * 3 2 1 34 34 H 1.08001 * 126.91177 * 359.97174 * 5 4 2 35 35 H 1.09001 * 109.47148 * 334.71449 * 7 6 5 36 36 H 1.09005 * 109.47175 * 214.71658 * 7 6 5 37 37 H 1.09005 * 113.47310 * 336.06042 * 9 8 7 38 38 H 1.08990 * 113.48150 * 106.52863 * 9 8 7 39 39 H 1.09004 * 114.34450 * 139.67688 * 10 9 8 40 40 H 0.97000 * 120.00204 * 68.84548 * 11 10 9 41 41 H 1.08999 * 109.46669 * 299.99827 * 14 12 11 42 42 H 1.09003 * 109.46743 * 59.99766 * 14 12 11 43 43 H 0.96998 * 120.00482 * 179.97438 * 19 18 16 44 44 H 1.09005 * 113.47586 * 253.47470 * 24 8 7 45 45 H 1.08997 * 113.47701 * 23.87649 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1866 -0.1359 2.4188 6 6 2.6538 -1.1223 3.2194 7 6 3.0034 -1.0079 4.6807 8 7 1.8516 -1.4209 5.4935 9 6 1.0294 -0.2574 5.8749 10 6 0.8911 -0.8827 7.2701 11 7 -0.2306 -1.8158 7.4008 12 6 -1.2908 -1.4919 8.1673 13 8 -1.3159 -0.4282 8.7494 14 6 -2.4445 -2.4520 8.3022 15 16 -3.7017 -1.7355 9.3894 16 6 -4.8975 -3.0295 9.3688 17 1 -4.7160 -3.9233 8.7904 18 6 -6.0728 -2.9001 10.0959 19 7 -6.2942 -1.8105 10.8004 20 14 -7.3407 -4.2716 10.0734 21 1 -6.8563 -5.3795 9.2114 22 1 -7.5499 -4.7750 11.4548 23 1 -8.6237 -3.7510 9.5368 24 6 2.2265 -1.5510 6.9140 25 7 2.7385 -2.2200 2.4595 26 7 2.3549 -1.9311 1.2662 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.9902 0.8885 2.6989 35 1 3.2602 0.0256 4.9131 36 1 3.8542 -1.6523 4.9023 37 1 1.5806 0.6830 5.8732 38 1 0.0866 -0.1951 5.3317 39 1 0.9546 -0.1683 8.0910 40 1 -0.2104 -2.6667 6.9356 41 1 -2.8776 -2.6399 7.3197 42 1 -2.0885 -3.3902 8.7279 43 1 -7.1156 -1.7199 11.3083 44 1 2.2981 -2.5851 7.2512 45 1 3.0977 -0.9567 7.1893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494338963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:12 Heat of formation + Delta-G solvation = 71.288938 kcal Electronic energy + Delta-G solvation = -25987.283982 eV Core-core repulsion = 22168.511139 eV Total energy + Delta-G solvation = -3818.772843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.24379 -41.57506 -39.86403 -37.45220 -35.18577 -34.58530 -33.40523 -32.18917 -31.07087 -29.38832 -28.29329 -27.66195 -26.91512 -25.52151 -24.78115 -22.27575 -22.13983 -21.55470 -20.70216 -19.82420 -18.29072 -17.93139 -17.41768 -17.24646 -16.88254 -16.65216 -16.30319 -16.20288 -16.02361 -15.61832 -15.42742 -15.27298 -14.70123 -14.50888 -14.19591 -13.91750 -13.77661 -13.55001 -13.42616 -13.23623 -13.15991 -12.92291 -12.80024 -12.64162 -12.61436 -12.53806 -12.24076 -12.19163 -11.88713 -11.69881 -11.62221 -11.15853 -11.00365 -10.96212 -10.28142 -10.22713 -10.04078 -9.80195 -8.65949 -8.35115 -6.12455 0.65995 1.26804 1.40910 1.44683 1.46346 1.51591 1.58284 1.59365 2.24276 2.28823 2.98898 3.08502 3.30380 3.32392 3.48955 3.58306 3.76357 3.87234 3.91705 3.96777 3.98892 4.03290 4.29908 4.32134 4.39181 4.44632 4.51540 4.55880 4.58643 4.60621 4.70650 4.72672 4.73212 4.84223 4.87503 4.92980 5.10383 5.13675 5.22604 5.34881 5.42285 5.55717 5.72563 6.03361 6.20076 6.51949 7.06485 7.24534 7.55620 8.74319 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.002013 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.291156 B =13906.656105 C =14923.579017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.159 4.159 4 N -0.280 5.280 5 C -0.032 4.032 6 C -0.024 4.024 7 C 0.107 3.893 8 N -0.483 5.483 9 C -0.008 4.008 10 C 0.106 3.894 11 N -0.691 5.691 12 C 0.540 3.460 13 O -0.561 6.561 14 C -0.131 4.131 15 S -0.144 6.144 16 C -0.547 4.547 17 H 0.080 0.920 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.007 3.993 25 N -0.298 5.298 26 N -0.127 5.127 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.219 0.781 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.093 0.907 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.994 7.309 -22.438 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.217 4.217 4 N -0.074 5.074 5 C -0.184 4.184 6 C -0.164 4.164 7 C -0.023 4.023 8 N -0.206 5.206 9 C -0.138 4.138 10 C -0.001 4.001 11 N -0.343 5.343 12 C 0.326 3.674 13 O -0.439 6.439 14 C -0.283 4.283 15 S 0.083 5.917 16 C -0.695 4.695 17 H 0.098 0.902 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.820 3.180 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.122 4.122 25 N -0.164 5.164 26 N -0.105 5.105 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.251 0.749 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 21.739 7.246 -22.605 32.188 hybrid contribution -0.712 -0.742 0.045 1.029 sum 21.027 6.505 -22.560 31.518 Atomic orbital electron populations 1.22227 0.91891 1.02849 1.05065 1.22099 0.96257 0.94936 0.83912 1.22221 1.02211 0.91401 1.05823 1.47946 1.40889 1.07570 1.11016 1.23775 1.06624 1.03121 0.84930 1.22111 1.06089 0.89739 0.98440 1.20937 0.93988 1.02250 0.85099 1.68948 1.14521 1.29612 1.07489 1.24480 0.99613 0.94812 0.94864 1.22057 0.86654 0.93026 0.98329 1.45351 1.17719 1.22133 1.49117 1.19975 0.83141 0.86440 0.77865 1.90677 1.80047 1.25726 1.47473 1.23375 0.97666 1.02219 1.04991 1.85472 1.16453 1.28571 1.61206 1.23237 1.05852 1.05088 1.35308 0.90176 1.26111 0.99884 0.99276 0.93850 1.70174 1.26723 1.28318 1.29411 0.84915 0.77130 0.77510 0.78458 1.18303 1.19806 1.19823 1.24245 0.96332 1.03367 0.88249 1.74989 1.17697 1.26242 0.97486 1.78226 1.18111 0.97954 1.16250 0.91654 0.87033 0.93464 0.86549 0.91536 0.87152 0.90338 0.76452 0.88584 0.88964 0.87299 0.91307 0.87995 0.74876 0.87754 0.87402 0.91945 0.88900 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.52 71.98 0.69 -0.62 16 2 C 0.13 1.08 3.85 44.99 0.17 1.25 16 3 C -0.16 -0.38 8.84 71.98 0.64 0.25 16 4 N -0.28 -4.64 3.25 -327.17 -1.06 -5.70 16 5 C -0.03 -0.46 10.62 83.49 0.89 0.43 16 6 C -0.02 -0.47 6.83 41.59 0.28 -0.18 16 7 C 0.11 1.50 5.38 85.56 0.46 1.96 16 8 N -0.48 -8.24 6.32 -932.44 -5.89 -14.13 16 9 C -0.01 -0.13 7.52 83.58 0.63 0.50 16 10 C 0.11 2.19 4.60 45.45 0.21 2.40 16 11 N -0.69 -18.16 5.39 -441.68 -2.38 -20.54 16 12 C 0.54 19.97 7.85 87.66 0.69 20.66 16 13 O -0.56 -25.37 15.45 -3.03 -0.05 -25.42 16 14 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 15 S -0.14 -8.06 20.57 -56.49 -1.16 -9.22 16 16 C -0.55 -31.65 9.50 67.96 0.65 -31.01 16 17 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.78 5.49 84.86 0.47 1.25 16 19 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 20 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.01 0.10 7.45 83.58 0.62 0.72 16 25 N -0.30 -8.03 12.41 -48.60 -0.60 -8.63 16 26 N -0.13 -3.18 13.16 37.02 0.49 -2.70 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.08 0.10 7.18 -2.39 -0.02 0.08 16 34 H 0.22 1.34 7.31 -2.91 -0.02 1.32 16 35 H 0.10 0.72 7.30 -2.39 -0.02 0.70 16 36 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 37 H 0.11 1.16 7.42 -2.38 -0.02 1.14 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 2.38 7.45 -2.38 -0.02 2.37 16 40 H 0.41 9.41 8.76 -92.71 -0.81 8.60 16 41 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 42 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.11 0.97 7.91 -2.39 -0.02 0.95 16 Total: -1.00 -85.42 393.19 -1.33 -86.75 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.19 Total: 16.43 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 6.82 Total: -7.29 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -9.16 Total: -107.43 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -85.42 -1.33 -86.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494338963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.040 kcal (2) G-P(sol) polarization free energy of solvation -85.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds