Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46721 * 2 1 4 4 C 1.35633 * 125.68181 * 265.40498 * 3 2 1 5 5 C 1.35507 * 108.85592 * 180.15977 * 4 3 2 6 6 Cl 1.73602 * 126.07599 * 179.87182 * 5 4 3 7 7 C 1.39892 * 107.85460 * 359.60640 * 5 4 3 8 8 C 1.37644 * 125.67646 * 85.12860 * 3 2 1 9 9 C 1.46665 * 126.22187 * 359.97438 * 8 3 2 10 10 O 1.21695 * 119.99979 * 6.44781 * 9 8 3 11 11 N 1.34777 * 120.00269 * 186.44785 * 9 8 3 12 12 C 1.47424 * 125.64469 * 4.98814 * 11 9 8 13 13 C 1.55130 * 104.72318 * 155.82008 * 12 11 9 14 14 C 1.55164 * 101.48457 * 37.29600 * 13 12 11 15 15 C 1.52994 * 110.87271 * 82.76609 * 14 13 12 16 16 C 1.52995 * 110.71661 * 205.97185 * 14 13 12 17 17 N 1.46505 * 109.47016 * 174.97448 * 16 14 13 18 18 C 1.36937 * 120.00298 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99620 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99919 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99534 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47644 * 60.00067 * 22 20 18 24 24 H 1.48505 * 109.46780 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47021 * 299.99688 * 22 20 18 26 26 C 1.47024 * 125.65048 * 185.30170 * 11 9 8 27 27 H 1.09003 * 109.47007 * 55.02946 * 1 2 3 28 28 H 1.09001 * 109.46636 * 175.03047 * 1 2 3 29 29 H 1.09001 * 109.46659 * 295.02658 * 1 2 3 30 30 H 1.09003 * 109.47099 * 240.00137 * 2 1 3 31 31 H 1.08993 * 109.47049 * 119.99891 * 2 1 3 32 32 H 1.08006 * 125.56779 * 0.05107 * 4 3 2 33 33 H 1.07997 * 126.45502 * 180.20335 * 7 5 4 34 34 H 1.09002 * 110.36734 * 274.74692 * 12 11 9 35 35 H 1.08997 * 110.36569 * 37.06890 * 12 11 9 36 36 H 1.08998 * 111.19241 * 279.19145 * 13 12 11 37 37 H 1.08995 * 110.94154 * 155.28939 * 13 12 11 38 38 H 1.08998 * 109.47422 * 304.93908 * 15 14 13 39 39 H 1.09005 * 109.46991 * 64.93378 * 15 14 13 40 40 H 1.09001 * 109.47024 * 184.93591 * 15 14 13 41 41 H 1.08998 * 109.47229 * 294.97201 * 16 14 13 42 42 H 1.08999 * 109.47570 * 54.97986 * 16 14 13 43 43 H 0.97001 * 119.99359 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99998 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88045 * 300.43728 * 26 11 9 46 46 H 1.08998 * 109.88144 * 61.44778 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3652 2.0977 -1.0982 5 6 2.7712 3.3299 -0.7069 6 17 3.3160 4.6059 -1.7503 7 6 2.6675 3.3932 0.6867 8 6 2.1963 2.1697 1.1141 9 6 1.9323 1.7797 2.5031 10 8 1.6280 0.6309 2.7652 11 7 2.0267 2.6935 3.4892 12 6 2.2826 4.1336 3.3045 13 6 1.6939 4.8046 4.5732 14 6 2.0517 3.7641 5.6672 15 6 3.4905 3.9547 6.1511 16 6 1.0722 3.8526 6.8393 17 7 1.3602 2.7830 7.7981 18 6 0.6075 2.6622 8.9357 19 1 -0.1986 3.3552 9.1258 20 6 0.8808 1.6491 9.8444 21 7 1.8630 0.8042 9.6125 22 14 -0.1464 1.4840 11.3958 23 1 -1.5676 1.2615 11.0272 24 1 0.3445 0.3321 12.1943 25 1 -0.0323 2.7274 12.1997 26 6 1.8981 2.4183 4.9277 27 1 -0.3633 0.5890 -0.8421 28 1 -0.3632 -1.0238 -0.0890 29 1 -0.3633 0.4348 0.9312 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3260 1.7433 -2.1177 33 1 2.9112 4.2405 1.3105 34 1 3.3538 4.3227 3.2349 35 1 1.7735 4.4979 2.4122 36 1 0.6141 4.9274 4.4890 37 1 2.1796 5.7604 4.7694 38 1 4.1685 3.9182 5.2984 39 1 3.5821 4.9211 6.6469 40 1 3.7461 3.1606 6.8527 41 1 1.1799 4.8196 7.3305 42 1 0.0525 3.7442 6.4697 43 1 2.0846 2.1608 7.6275 44 1 2.0542 0.0965 10.2477 45 1 0.9178 1.9901 5.1369 46 1 2.6795 1.7274 5.2443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500402115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 26.608171 kcal Electronic energy + Delta-G solvation = -27634.913881 eV Core-core repulsion = 23779.867077 eV Total energy + Delta-G solvation = -3855.046804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.81672 -39.85548 -37.83813 -36.63385 -35.06233 -34.19331 -32.74346 -30.56452 -30.01450 -29.42219 -28.95228 -26.51060 -25.60968 -24.21756 -23.56208 -22.23454 -21.58724 -20.94479 -19.32885 -18.77926 -17.47344 -16.97642 -16.30800 -16.12627 -15.58299 -15.27385 -14.71276 -14.62495 -14.48639 -14.10573 -13.94296 -13.64071 -13.47068 -13.30525 -13.03743 -12.94218 -12.93160 -12.58340 -12.38835 -12.10731 -11.88154 -11.79817 -11.61600 -11.56162 -11.48043 -11.08396 -11.00075 -10.81324 -10.53569 -10.41979 -10.32578 -9.99281 -9.89641 -9.61797 -8.93798 -8.86371 -8.68162 -8.38591 -6.91175 -5.74855 -3.03617 1.22574 1.86437 2.20983 2.50723 3.19990 3.24490 3.45434 3.49801 3.50822 4.30527 4.42820 4.57189 4.58814 4.62835 4.75443 4.83387 4.92891 4.99923 5.03259 5.25743 5.30859 5.33172 5.39905 5.48376 5.54200 5.59729 5.66939 5.68548 5.85687 5.88443 6.01001 6.06207 6.09228 6.14774 6.21481 6.32002 6.37692 6.47957 6.56366 6.63356 6.73542 6.79235 6.82678 7.51510 7.70913 8.13278 8.43740 9.55091 10.11937 10.46514 11.47860 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002612 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.526535 B =10716.816758 C =11852.213588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.399 5.399 4 C 0.029 3.971 5 C -0.124 4.124 6 Cl -0.053 7.053 7 C -0.144 4.144 8 C -0.023 4.023 9 C 0.597 3.403 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.089 3.911 13 C -0.123 4.123 14 C -0.077 4.077 15 C -0.132 4.132 16 C 0.169 3.831 17 N -0.730 5.730 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.125 3.875 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.021 0.979 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.079 0.921 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 6.041 -24.856 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.072 5.072 4 C -0.107 4.107 5 C -0.157 4.157 6 Cl -0.025 7.025 7 C -0.170 4.170 8 C -0.137 4.137 9 C 0.386 3.614 10 O -0.422 6.422 11 N -0.333 5.333 12 C -0.034 4.034 13 C -0.162 4.162 14 C -0.078 4.078 15 C -0.189 4.189 16 C 0.041 3.959 17 N -0.375 5.375 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.004 3.996 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.149 5.094 -24.679 25.291 hybrid contribution -0.219 -0.192 0.627 0.691 sum 1.930 4.903 -24.053 24.623 Atomic orbital electron populations 1.22093 0.93691 1.03230 1.03204 1.22182 0.96246 0.78707 1.05491 1.44041 1.46586 1.11925 1.04680 1.21687 1.05276 0.91512 0.92265 1.19919 1.12828 0.91322 0.91585 1.98322 1.88882 1.49404 1.65863 1.21803 1.04621 0.97242 0.93312 1.20018 1.13361 0.92096 0.88252 1.16448 0.77957 0.84417 0.82533 1.90822 1.49085 1.18636 1.83611 1.48139 1.70024 1.08191 1.06974 1.22854 1.00656 0.80389 0.99504 1.22933 1.01733 0.98356 0.93165 1.21837 0.97605 0.93162 0.95225 1.21759 0.93714 1.02853 1.00600 1.20640 0.94239 0.92798 0.88215 1.42364 1.39915 1.33518 1.21725 1.19159 1.10410 1.10664 0.96946 0.91272 1.24729 0.98849 0.98185 0.99099 1.69641 1.31860 1.19276 1.37317 0.86274 0.79651 0.77036 0.83240 1.21314 1.21730 1.21306 1.22126 1.03287 0.97463 0.76737 0.92265 0.90401 0.91280 0.89075 0.86887 0.80722 0.81826 0.90791 0.89649 0.90220 0.89547 0.93442 0.92313 0.91162 0.95739 0.96156 0.78109 0.93450 0.90258 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.09 0.86 6.21 -4.04 -0.03 0.84 16 3 N -0.40 -4.29 2.76 -112.83 -0.31 -4.60 16 4 C 0.03 0.27 11.35 -16.85 -0.19 0.08 16 5 C -0.12 -1.25 6.66 -39.94 -0.27 -1.52 16 6 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 7 C -0.14 -1.57 9.15 -39.09 -0.36 -1.93 16 8 C -0.02 -0.29 6.83 -81.98 -0.56 -0.85 16 9 C 0.60 9.16 7.80 -12.86 -0.10 9.06 16 10 O -0.54 -9.90 15.06 5.19 0.08 -9.82 16 11 N -0.60 -8.60 3.32 -171.92 -0.57 -9.17 16 12 C 0.09 0.95 4.79 -2.41 -0.01 0.94 16 13 C -0.12 -1.40 6.04 -24.46 -0.15 -1.54 16 14 C -0.08 -1.17 0.61 -152.67 -0.09 -1.26 16 15 C -0.13 -1.93 8.26 37.15 0.31 -1.62 16 16 C 0.17 3.24 5.07 -4.04 -0.02 3.22 16 17 N -0.73 -17.95 5.15 -59.91 -0.31 -18.26 16 18 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.13 2.10 5.47 -3.06 -0.02 2.08 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.09 0.56 8.12 -51.93 -0.42 0.13 16 31 H 0.11 1.29 6.47 -51.93 -0.34 0.95 16 32 H 0.18 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.16 1.53 4.74 -52.49 -0.25 1.28 16 34 H 0.07 0.70 7.34 -51.93 -0.38 0.32 16 35 H 0.09 0.79 5.83 -51.93 -0.30 0.49 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 37 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.05 0.60 7.44 -51.93 -0.39 0.21 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.23 7.11 -51.93 -0.37 0.86 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 43 H 0.38 9.95 6.37 -40.82 -0.26 9.69 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 1.54 7.82 -51.93 -0.41 1.13 16 46 H 0.07 1.34 7.85 -51.93 -0.41 0.93 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -32.50 381.70 -9.39 -41.89 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.86 Total: 7.07 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.35 Total: -0.85 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.47 Total: -59.48 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.50 -9.39 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500402115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.500 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds