Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46721 * 2 1 4 4 C 1.35633 * 125.68181 * 265.40498 * 3 2 1 5 5 C 1.35507 * 108.85592 * 180.15977 * 4 3 2 6 6 Cl 1.73602 * 126.07599 * 179.87182 * 5 4 3 7 7 C 1.39892 * 107.85460 * 359.60640 * 5 4 3 8 8 C 1.37644 * 125.67646 * 85.12860 * 3 2 1 9 9 C 1.46665 * 126.22187 * 359.97438 * 8 3 2 10 10 O 1.21695 * 119.99979 * 6.44781 * 9 8 3 11 11 N 1.34777 * 120.00269 * 186.44785 * 9 8 3 12 12 C 1.47424 * 125.64469 * 4.98814 * 11 9 8 13 13 C 1.55130 * 104.72318 * 155.82008 * 12 11 9 14 14 C 1.55164 * 101.48457 * 37.29600 * 13 12 11 15 15 C 1.52994 * 110.87271 * 82.76609 * 14 13 12 16 16 C 1.52995 * 110.71661 * 205.97185 * 14 13 12 17 17 N 1.46505 * 109.47016 * 174.97448 * 16 14 13 18 18 C 1.36937 * 120.00298 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99620 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99919 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99534 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47644 * 60.00067 * 22 20 18 24 24 H 1.48505 * 109.46780 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47021 * 299.99688 * 22 20 18 26 26 C 1.47024 * 125.65048 * 185.30170 * 11 9 8 27 27 H 1.09003 * 109.47007 * 55.02946 * 1 2 3 28 28 H 1.09001 * 109.46636 * 175.03047 * 1 2 3 29 29 H 1.09001 * 109.46659 * 295.02658 * 1 2 3 30 30 H 1.09003 * 109.47099 * 240.00137 * 2 1 3 31 31 H 1.08993 * 109.47049 * 119.99891 * 2 1 3 32 32 H 1.08006 * 125.56779 * 0.05107 * 4 3 2 33 33 H 1.07997 * 126.45502 * 180.20335 * 7 5 4 34 34 H 1.09002 * 110.36734 * 274.74692 * 12 11 9 35 35 H 1.08997 * 110.36569 * 37.06890 * 12 11 9 36 36 H 1.08998 * 111.19241 * 279.19145 * 13 12 11 37 37 H 1.08995 * 110.94154 * 155.28939 * 13 12 11 38 38 H 1.08998 * 109.47422 * 304.93908 * 15 14 13 39 39 H 1.09005 * 109.46991 * 64.93378 * 15 14 13 40 40 H 1.09001 * 109.47024 * 184.93591 * 15 14 13 41 41 H 1.08998 * 109.47229 * 294.97201 * 16 14 13 42 42 H 1.08999 * 109.47570 * 54.97986 * 16 14 13 43 43 H 0.97001 * 119.99359 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99998 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88045 * 300.43728 * 26 11 9 46 46 H 1.08998 * 109.88144 * 61.44778 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3652 2.0977 -1.0982 5 6 2.7712 3.3299 -0.7069 6 17 3.3160 4.6059 -1.7503 7 6 2.6675 3.3932 0.6867 8 6 2.1963 2.1697 1.1141 9 6 1.9323 1.7797 2.5031 10 8 1.6280 0.6309 2.7652 11 7 2.0267 2.6935 3.4892 12 6 2.2826 4.1336 3.3045 13 6 1.6939 4.8046 4.5732 14 6 2.0517 3.7641 5.6672 15 6 3.4905 3.9547 6.1511 16 6 1.0722 3.8526 6.8393 17 7 1.3602 2.7830 7.7981 18 6 0.6075 2.6622 8.9357 19 1 -0.1986 3.3552 9.1258 20 6 0.8808 1.6491 9.8444 21 7 1.8630 0.8042 9.6125 22 14 -0.1464 1.4840 11.3958 23 1 -1.5676 1.2615 11.0272 24 1 0.3445 0.3321 12.1943 25 1 -0.0323 2.7274 12.1997 26 6 1.8981 2.4183 4.9277 27 1 -0.3633 0.5890 -0.8421 28 1 -0.3632 -1.0238 -0.0890 29 1 -0.3633 0.4348 0.9312 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3260 1.7433 -2.1177 33 1 2.9112 4.2405 1.3105 34 1 3.3538 4.3227 3.2349 35 1 1.7735 4.4979 2.4122 36 1 0.6141 4.9274 4.4890 37 1 2.1796 5.7604 4.7694 38 1 4.1685 3.9182 5.2984 39 1 3.5821 4.9211 6.6469 40 1 3.7461 3.1606 6.8527 41 1 1.1799 4.8196 7.3305 42 1 0.0525 3.7442 6.4697 43 1 2.0846 2.1608 7.6275 44 1 2.0542 0.0965 10.2477 45 1 0.9178 1.9901 5.1369 46 1 2.6795 1.7274 5.2443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500402115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 7.076773 kcal Electronic energy + Delta-G solvation = -27635.760826 eV Core-core repulsion = 23779.867077 eV Total energy + Delta-G solvation = -3855.893749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.66819 -40.99109 -39.08036 -37.35740 -36.59020 -35.17974 -34.27952 -32.32544 -30.96238 -30.24376 -30.10715 -27.81240 -27.16229 -25.50629 -24.56948 -23.70328 -22.57619 -21.78516 -20.32757 -20.08625 -19.17002 -18.10199 -17.54159 -17.18510 -16.67335 -16.52696 -16.11476 -15.55588 -15.48936 -15.42422 -15.25898 -15.03294 -14.82516 -14.37905 -14.27459 -14.01699 -13.79225 -13.63040 -13.55830 -13.25249 -13.08796 -13.01332 -12.81017 -12.71945 -12.61478 -12.37763 -12.24586 -12.20909 -12.01277 -11.84782 -11.72521 -11.49167 -11.31959 -11.07831 -10.92568 -9.82788 -9.74672 -9.23695 -8.98009 -7.94091 -5.22319 0.31108 1.11669 1.43914 1.46181 1.49487 1.55436 1.58518 2.17969 2.26645 2.56185 3.28308 3.39873 3.55157 3.66115 3.76126 3.82284 3.94952 4.04400 4.11149 4.20030 4.26497 4.33556 4.37461 4.40228 4.45995 4.57444 4.67851 4.73372 4.78630 4.81115 4.89609 4.93209 4.96318 5.06851 5.08574 5.11699 5.21413 5.22366 5.30477 5.44253 5.48992 5.52674 5.72005 6.04870 6.27761 6.41350 6.98680 7.34403 8.11277 8.33529 9.29389 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002612 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.526535 B =10716.816758 C =11852.213588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.404 5.404 4 C 0.051 3.949 5 C -0.140 4.140 6 Cl -0.042 7.042 7 C -0.130 4.130 8 C -0.058 4.058 9 C 0.589 3.411 10 O -0.588 6.588 11 N -0.602 5.602 12 C 0.088 3.912 13 C -0.111 4.111 14 C -0.069 4.069 15 C -0.124 4.124 16 C 0.167 3.833 17 N -0.743 5.743 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.135 3.865 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.180 0.820 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.015 0.985 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.040 0.960 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 8.466 -27.458 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.077 5.077 4 C -0.087 4.087 5 C -0.172 4.172 6 Cl -0.014 7.014 7 C -0.156 4.156 8 C -0.171 4.171 9 C 0.381 3.619 10 O -0.470 6.470 11 N -0.333 5.333 12 C -0.033 4.033 13 C -0.150 4.150 14 C -0.070 4.070 15 C -0.182 4.182 16 C 0.040 3.960 17 N -0.386 5.386 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.200 1.200 26 C 0.012 3.988 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.148 0.852 31 H 0.101 0.899 32 H 0.228 0.772 33 H 0.197 0.803 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.033 0.967 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.268 7.595 -27.301 28.428 hybrid contribution -0.276 -0.911 1.304 1.615 sum 1.993 6.684 -25.996 26.916 Atomic orbital electron populations 1.22033 0.93594 1.04137 1.01735 1.22257 0.96306 0.78314 1.05888 1.44225 1.46508 1.12322 1.04638 1.22301 1.02472 0.90854 0.93078 1.20016 1.13595 0.92138 0.91461 1.98329 1.88794 1.48930 1.65340 1.22003 1.02854 0.96684 0.94067 1.19689 1.16519 0.93572 0.87289 1.16973 0.77134 0.83926 0.83889 1.90790 1.51197 1.20552 1.84492 1.48180 1.69747 1.09879 1.05541 1.23143 1.02343 0.77781 1.00050 1.22963 1.02364 0.98420 0.91208 1.21716 0.97062 0.93634 0.94618 1.21682 0.93571 1.02107 1.00814 1.20815 0.95095 0.91391 0.88669 1.42581 1.39259 1.34675 1.22071 1.19607 1.10204 1.10145 0.97580 0.90560 1.25564 1.00430 0.98419 1.02516 1.69816 1.33880 1.20101 1.38351 0.85218 0.78100 0.76966 0.79519 1.20676 1.22360 1.20050 1.21784 1.00005 0.97987 0.79056 0.90734 0.88889 0.94997 0.85214 0.89870 0.77220 0.80340 0.88504 0.87475 0.90095 0.86146 0.90944 0.90841 0.94891 0.94595 0.96712 0.79360 0.94122 0.94157 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 71.98 0.74 -1.99 16 2 C 0.09 1.63 6.21 86.38 0.54 2.16 16 3 N -0.40 -8.09 2.76 -510.87 -1.41 -9.50 16 4 C 0.05 0.76 11.35 83.47 0.95 1.71 16 5 C -0.14 -2.39 6.66 22.04 0.15 -2.25 16 6 Cl -0.04 -0.64 29.30 -2.72 -0.08 -0.72 16 7 C -0.13 -2.51 9.15 22.59 0.21 -2.31 16 8 C -0.06 -1.41 6.83 40.35 0.28 -1.14 16 9 C 0.59 18.80 7.80 86.44 0.67 19.48 16 10 O -0.59 -23.25 15.06 -4.33 -0.07 -23.32 16 11 N -0.60 -17.50 3.32 -816.06 -2.71 -20.22 16 12 C 0.09 1.66 4.79 86.93 0.42 2.08 16 13 C -0.11 -2.23 6.04 32.07 0.19 -2.03 16 14 C -0.07 -2.08 0.61 -50.99 -0.03 -2.11 16 15 C -0.12 -3.56 8.26 71.98 0.59 -2.96 16 16 C 0.17 6.46 5.07 86.38 0.44 6.89 16 17 N -0.74 -37.85 5.15 -343.45 -1.77 -39.61 16 18 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 19 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 22 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.13 4.79 5.47 86.73 0.47 5.26 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 30 H 0.13 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.08 2.01 6.47 -2.39 -0.02 2.00 16 32 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.18 2.72 4.74 -2.91 -0.01 2.71 16 34 H 0.10 1.46 7.34 -2.39 -0.02 1.44 16 35 H 0.11 1.63 5.83 -2.39 -0.01 1.62 16 36 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 37 H 0.12 1.68 8.04 -2.39 -0.02 1.66 16 38 H 0.07 1.69 7.44 -2.39 -0.02 1.67 16 39 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.03 1.18 7.11 -2.39 -0.02 1.16 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.01 0.60 8.13 -2.39 -0.02 0.58 16 43 H 0.37 20.50 6.37 -92.71 -0.59 19.91 16 44 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.04 1.71 7.82 -2.39 -0.02 1.70 16 46 H 0.04 1.80 7.85 -2.39 -0.02 1.78 16 Total: -1.00 -75.48 381.70 3.59 -71.89 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.41 Total: 27.20 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.92 Total: 5.84 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -5.61 Total: -129.96 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.07 Total: -23.32 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -75.48 3.59 -71.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500402115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.967 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds