Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.00199 * 2 1 4 4 C 1.54337 * 109.77533 * 121.16340 * 2 1 3 5 5 C 1.55153 * 103.02242 * 97.49532 * 4 2 1 6 6 H 1.08994 * 111.00767 * 277.23315 * 5 4 2 7 7 N 1.46896 * 111.00584 * 153.37978 * 5 4 2 8 8 C 1.46900 * 111.00412 * 161.35113 * 7 5 4 9 9 C 1.50700 * 109.47222 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00004 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99612 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99793 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99789 * 359.97438 * 12 11 9 14 14 C 1.38948 * 119.99656 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99483 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00483 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47161 * 89.99503 * 16 14 12 18 18 H 1.48497 * 109.47618 * 209.99763 * 16 14 12 19 19 H 1.48498 * 109.46942 * 329.99860 * 16 14 12 20 20 C 1.54908 * 101.58104 * 35.30603 * 5 4 2 21 21 N 1.47017 * 109.88240 * 238.89681 * 2 1 3 22 22 C 1.34779 * 125.64258 * 59.57059 * 21 2 1 23 23 O 1.21572 * 120.00449 * 359.70434 * 22 21 2 24 24 C 1.47627 * 119.99685 * 179.71486 * 22 21 2 25 25 N 1.31864 * 126.45699 * 359.96725 * 24 22 21 26 26 N 1.28474 * 110.15163 * 180.02562 * 25 24 22 27 27 H 0.96998 * 124.92759 * 179.73496 * 26 25 24 28 28 C 1.35726 * 110.13554 * 0.02562 * 26 25 24 29 29 C 1.35544 * 107.11218 * 359.97438 * 28 26 25 30 30 F 1.35109 * 127.23807 * 179.97438 * 29 28 26 31 31 H 1.08999 * 109.47410 * 179.64234 * 1 2 3 32 32 H 1.09004 * 109.46923 * 299.64964 * 1 2 3 33 33 H 1.09000 * 109.46612 * 59.64174 * 1 2 3 34 34 H 1.09007 * 110.84931 * 339.02618 * 4 2 1 35 35 H 1.09003 * 110.66515 * 215.87969 * 4 2 1 36 36 H 1.00901 * 111.00174 * 37.39679 * 7 5 4 37 37 H 1.09001 * 109.46808 * 300.00528 * 8 7 5 38 38 H 1.08997 * 109.47141 * 59.99808 * 8 7 5 39 39 H 0.97003 * 120.00087 * 359.97438 * 11 9 8 40 40 H 0.97004 * 119.99856 * 179.97438 * 15 14 12 41 41 H 1.08995 * 110.37012 * 204.15214 * 20 5 4 42 42 H 1.09004 * 110.46117 * 81.87337 * 20 5 4 43 43 H 1.07995 * 126.44520 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0522 -0.7516 1.2428 5 6 2.3561 -2.1697 0.6916 6 1 1.4521 -2.7778 0.6580 7 7 3.4027 -2.8294 1.4837 8 6 3.3885 -4.2825 1.2687 9 6 4.4737 -4.9232 2.0952 10 8 5.1883 -4.2368 2.7948 11 7 4.6500 -6.2588 2.0568 12 6 5.6369 -6.8418 2.8090 13 1 6.2732 -6.2307 3.4320 14 6 5.8184 -8.2188 2.7699 15 7 6.7647 -8.7775 3.4906 16 14 4.7184 -9.2757 1.6919 17 1 5.3257 -9.4070 0.3431 18 1 4.5726 -10.6216 2.3023 19 1 3.3822 -8.6387 1.5732 20 6 2.8613 -1.8466 -0.7366 21 7 2.0300 -0.7142 -1.1838 22 6 1.7755 -0.3845 -2.4656 23 8 1.0731 0.5750 -2.7186 24 6 2.3494 -1.1888 -3.5625 25 7 3.1239 -2.2484 -3.4349 26 7 3.4439 -2.7046 -4.5925 27 1 4.0101 -3.4767 -4.7480 28 6 2.8800 -1.9455 -5.5661 29 6 2.1728 -0.9672 -4.9497 30 9 1.4518 0.0136 -5.5359 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5084 0.8931 33 1 -0.3632 0.5194 -0.8868 34 1 1.2884 -0.7950 2.0192 35 1 2.9600 -0.2827 1.6226 36 1 3.3083 -2.6079 2.4635 37 1 2.4198 -4.6842 1.5659 38 1 3.5620 -4.4955 0.2140 39 1 4.0783 -6.8077 1.4976 40 1 6.8912 -9.7389 3.4635 41 1 2.7178 -2.7049 -1.3930 42 1 3.9125 -1.5595 -0.7131 43 1 2.9767 -2.0932 -6.6315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507317986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = -16.579622 kcal Electronic energy + Delta-G solvation = -29214.519155 eV Core-core repulsion = 24825.722869 eV Total energy + Delta-G solvation = -4388.796286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -48.93548 -43.07523 -40.30262 -38.58017 -37.74746 -34.90626 -33.88095 -32.93077 -31.70640 -31.43104 -30.83700 -30.02450 -26.57885 -26.07553 -24.91463 -23.81498 -22.48213 -21.72131 -20.73152 -19.69144 -19.36522 -18.85169 -18.35832 -17.44303 -16.80969 -16.28788 -16.18255 -16.10164 -15.54317 -15.40210 -15.36091 -14.97567 -14.80839 -14.56601 -14.00741 -13.78028 -13.68380 -13.45053 -13.17893 -13.04578 -12.78226 -12.62620 -12.47355 -12.21946 -11.98422 -11.86575 -11.55609 -11.24254 -11.12605 -10.96746 -10.75057 -10.63533 -10.27054 -10.01304 -10.01105 -9.61234 -9.38403 -8.82611 -8.64017 -8.27682 -8.21009 -6.34674 -3.86212 1.06416 1.41102 2.20183 2.64383 2.98286 3.02423 3.03317 3.11269 3.66321 3.70140 3.99138 4.06483 4.16262 4.28944 4.39693 4.46095 4.64534 4.75859 4.84247 4.88659 5.11048 5.16443 5.19093 5.26057 5.42221 5.54433 5.63897 5.66086 5.74241 5.78995 5.84437 5.87404 5.89790 5.99339 6.07860 6.23746 6.38562 7.02185 7.15163 7.28976 7.48098 7.54467 7.91982 8.10876 8.55879 8.91382 9.38666 9.78660 10.78479 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.002724 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.174694 B =10275.517260 C =11913.776891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.059 0.941 7 N -0.655 5.655 8 C 0.047 3.953 9 C 0.450 3.550 10 O -0.564 6.564 11 N -0.591 5.591 12 C -0.305 4.305 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.109 3.891 21 N -0.599 5.599 22 C 0.617 3.383 23 O -0.526 6.526 24 C -0.028 4.028 25 N -0.223 5.223 26 N -0.368 5.368 27 H 0.458 0.542 28 C -0.036 4.036 29 C 0.036 3.964 30 F -0.100 7.100 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.357 0.643 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 12.062 -17.230 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.168 4.168 5 C -0.039 4.039 6 H 0.077 0.923 7 N -0.289 5.289 8 C -0.086 4.086 9 C 0.236 3.764 10 O -0.445 6.445 11 N -0.230 5.230 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.521 5.521 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.014 4.014 21 N -0.333 5.333 22 C 0.403 3.597 23 O -0.400 6.400 24 C -0.189 4.189 25 N -0.060 5.060 26 N -0.084 5.084 27 H 0.305 0.695 28 C -0.181 4.181 29 C 0.006 3.994 30 F -0.079 7.079 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.178 0.822 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.119 12.379 -16.552 23.470 hybrid contribution -1.655 -1.233 -1.243 2.410 sum -12.774 11.145 -17.795 24.578 Atomic orbital electron populations 1.22180 0.94512 1.02430 1.03140 1.21555 0.94762 0.96395 0.83613 0.90130 1.22908 1.02580 0.94911 0.96407 1.22651 0.92970 0.94513 0.93726 0.92331 1.59946 1.47118 1.07662 1.14158 1.21775 0.97420 0.88388 1.00982 1.19680 0.87622 0.82556 0.86551 1.90573 1.48309 1.61907 1.43754 1.42207 1.32380 1.06119 1.42299 1.19434 1.09869 0.91663 1.22393 0.86257 1.25041 0.97044 0.96551 0.97535 1.69624 1.31238 1.11652 1.39597 0.86671 0.80511 0.81059 0.81119 1.19645 1.20194 1.19541 1.22557 0.95384 0.88822 0.94634 1.48276 1.49981 1.30738 1.04299 1.16281 0.80180 0.83128 0.80106 1.90827 1.38343 1.27976 1.82897 1.22085 1.04842 0.98389 0.93602 1.73845 1.13887 1.10806 1.07473 1.43177 1.37723 1.25130 1.02411 0.69487 1.22705 1.02517 0.95700 0.97186 1.17149 1.00769 0.91867 0.89631 1.91543 1.74971 1.58438 1.82957 0.92492 0.91490 0.90962 0.89679 0.89051 0.82209 0.93600 0.89409 0.79718 0.91600 0.89186 0.89699 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.05 37.16 0.34 -1.26 16 2 C 0.14 1.45 3.51 -66.95 -0.23 1.21 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.22 5.95 -24.89 -0.15 -1.37 16 5 C 0.07 0.80 3.32 -65.57 -0.22 0.58 16 6 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 7 N -0.66 -9.18 6.00 -105.73 -0.63 -9.82 16 8 C 0.05 0.72 6.04 -4.98 -0.03 0.69 16 9 C 0.45 9.75 7.82 -10.98 -0.09 9.66 16 10 O -0.56 -14.59 15.78 5.55 0.09 -14.50 16 11 N -0.59 -13.56 5.09 -10.96 -0.06 -13.61 16 12 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 13 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 15 N -0.88 -25.32 13.96 55.50 0.77 -24.54 16 16 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 20 C 0.11 1.26 5.80 -2.53 -0.01 1.24 16 21 N -0.60 -7.13 3.08 -164.20 -0.51 -7.64 16 22 C 0.62 8.41 7.64 -12.43 -0.09 8.31 16 23 O -0.53 -8.47 15.56 5.30 0.08 -8.39 16 24 C -0.03 -0.33 6.96 -82.74 -0.58 -0.91 16 25 N -0.22 -2.21 9.34 33.43 0.31 -1.90 16 26 N -0.37 -2.27 6.86 30.63 0.21 -2.06 16 27 H 0.46 1.10 8.96 -190.44 -1.71 -0.61 16 28 C -0.04 -0.22 12.06 -16.79 -0.20 -0.43 16 29 C 0.04 0.38 8.03 -39.27 -0.32 0.06 16 30 F -0.10 -1.23 17.03 2.25 0.04 -1.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.84 6.73 -51.93 -0.35 0.49 16 34 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.36 5.14 8.23 -39.29 -0.32 4.82 16 37 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.09 1.02 6.20 -51.93 -0.32 0.70 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.20 0.40 8.06 -52.49 -0.42 -0.03 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -35.97 365.33 -7.42 -43.39 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.69 Total: 10.40 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.83 Total: 10.25 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.10 Total: -59.57 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.17 Total: -22.89 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.97 -7.42 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507317986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.814 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds