Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.46783 * 2 1 4 4 C 1.54391 * 110.40987 * 237.59074 * 2 1 3 5 5 H 1.09005 * 110.40480 * 336.30944 * 4 2 1 6 6 N 1.46494 * 110.32167 * 98.47315 * 4 2 1 7 7 C 1.34784 * 119.99635 * 202.09259 * 6 4 2 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99961 * 180.02562 * 7 6 4 10 10 S 1.80996 * 109.47240 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00090 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00086 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00048 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99877 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99940 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47274 * 90.00007 * 15 13 11 17 17 H 1.48504 * 109.47283 * 209.99820 * 15 13 11 18 18 H 1.48499 * 109.47131 * 329.99824 * 15 13 11 19 19 C 1.54253 * 105.05982 * 217.37019 * 4 2 1 20 20 C 1.54384 * 105.06351 * 0.02562 * 19 4 2 21 21 N 1.48554 * 104.59499 * 23.85274 * 20 19 4 22 22 C 1.46902 * 111.00019 * 200.96517 * 21 20 19 23 23 C 1.50695 * 109.47367 * 69.87224 * 22 21 20 24 24 N 1.30837 * 125.96100 * 90.02141 * 23 22 21 25 25 C 1.33247 * 109.82784 * 180.02562 * 24 23 22 26 26 N 1.30709 * 108.94417 * 0.02562 * 25 24 23 27 27 N 1.34427 * 125.96030 * 269.72056 * 23 22 21 28 28 C 1.46500 * 126.82503 * 359.97438 * 27 23 22 29 29 H 1.08999 * 109.47676 * 182.41219 * 1 2 3 30 30 H 1.09002 * 109.46769 * 302.41032 * 1 2 3 31 31 H 1.09000 * 109.47093 * 62.40870 * 1 2 3 32 32 H 0.96995 * 120.00292 * 22.36691 * 6 4 2 33 33 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 34 34 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 35 35 H 0.97005 * 119.99703 * 180.02562 * 14 13 11 36 36 H 1.09007 * 110.32460 * 118.89505 * 19 4 2 37 37 H 1.08999 * 110.32681 * 240.99815 * 19 4 2 38 38 H 1.08996 * 110.41192 * 142.63847 * 20 19 4 39 39 H 1.09000 * 110.40651 * 265.07255 * 20 19 4 40 40 H 1.09007 * 109.47010 * 189.87151 * 22 21 20 41 41 H 1.08994 * 109.46617 * 309.86881 * 22 21 20 42 42 H 1.08001 * 125.52201 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.46813 * 90.00230 * 28 27 23 44 44 H 1.08998 * 109.47198 * 210.00181 * 28 27 23 45 45 H 1.08992 * 109.46862 * 330.00577 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0683 -0.7755 -1.2216 5 1 1.3241 -1.4879 -1.5777 6 7 2.4355 0.1539 -2.2928 7 6 2.4992 -0.2787 -3.5678 8 8 2.2531 -1.4373 -3.8280 9 6 2.8774 0.6772 -4.6697 10 16 2.8755 -0.1975 -6.2543 11 6 3.3370 1.1187 -7.3309 12 1 3.5231 2.1042 -6.9302 13 6 3.4625 0.8888 -8.6940 14 7 3.8078 1.8720 -9.4982 15 14 3.1414 -0.8158 -9.3871 16 1 1.7069 -0.9405 -9.7501 17 1 3.9779 -1.0243 -10.5963 18 1 3.4842 -1.8380 -8.3659 19 6 3.3176 -1.5189 -0.7056 20 6 3.4286 -1.1306 0.7844 21 7 2.0476 -0.7474 1.1753 22 6 2.0561 0.0998 2.3754 23 6 2.6312 1.4500 2.0332 24 7 1.9550 2.4902 1.6176 25 6 2.7825 3.5139 1.4106 26 7 4.0021 3.1374 1.6923 27 7 3.9276 1.7976 2.1069 28 6 5.0421 0.9466 2.5314 29 1 -0.3634 -1.0267 0.0433 30 1 -0.3633 0.5508 0.8676 31 1 -0.3633 0.4760 -0.9108 32 1 2.6366 1.0795 -2.0841 33 1 2.1573 1.4947 -4.7046 34 1 3.8727 1.0779 -4.4775 35 1 3.8951 1.7114 -10.4509 36 1 3.1859 -2.5962 -0.8069 37 1 4.2037 -1.1937 -1.2507 38 1 3.7686 -1.9815 1.3747 39 1 4.1068 -0.2862 0.9076 40 1 1.0366 0.2214 2.7416 41 1 2.6658 -0.3698 3.1473 42 1 2.4924 4.4955 1.0660 43 1 5.4555 0.4305 1.6649 44 1 5.8153 1.5626 2.9905 45 1 4.6845 0.2136 3.2544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566080413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = 75.906250 kcal Electronic energy + Delta-G solvation = -27605.084331 eV Core-core repulsion = 23786.511710 eV Total energy + Delta-G solvation = -3818.572621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.72966 -40.18073 -38.60759 -35.03712 -34.38109 -32.62621 -32.43875 -31.57452 -30.72301 -29.12630 -27.86423 -26.00731 -25.64559 -25.28349 -22.48297 -22.21020 -21.22224 -20.41871 -19.75467 -17.91567 -17.48169 -17.36235 -16.48810 -16.10217 -15.84688 -15.40767 -15.20614 -14.99767 -14.87175 -14.62226 -14.35418 -13.91082 -13.73325 -13.66942 -13.50402 -13.24315 -12.85828 -12.79787 -12.48935 -12.32267 -12.16247 -11.86906 -11.78615 -11.56026 -11.37841 -11.26193 -11.01025 -10.85864 -10.59659 -10.41308 -10.15782 -9.99120 -9.86082 -9.54883 -9.16170 -9.03419 -8.97957 -8.50865 -6.92237 -6.29130 -4.00971 1.12557 1.83488 2.51137 2.73048 2.94024 3.19179 3.33018 3.45653 3.50176 3.60549 3.76934 3.97486 4.14097 4.18322 4.32893 4.43116 4.51106 4.59871 4.68119 4.74182 4.86800 4.88511 5.00419 5.05463 5.09926 5.11686 5.15120 5.29958 5.39572 5.49967 5.56795 5.73788 5.76161 5.81696 5.88250 5.91158 6.00582 6.02137 6.07350 6.22102 6.29857 6.37893 6.62040 7.56671 7.67372 7.93977 8.41578 8.46696 9.16975 10.80173 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.002621 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.431401 B =10681.085479 C =11297.925261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 H 0.076 0.924 4 C 0.147 3.853 5 H 0.102 0.898 6 N -0.731 5.731 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C -0.136 4.136 20 C 0.015 3.985 21 N -0.484 5.484 22 C 0.120 3.880 23 C 0.242 3.758 24 N -0.529 5.529 25 C 0.199 3.801 26 N -0.317 5.317 27 N -0.375 5.375 28 C 0.088 3.912 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.396 0.604 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.271 0.729 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 -2.598 30.017 30.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 H 0.093 0.907 4 C 0.041 3.959 5 H 0.120 0.880 6 N -0.385 5.385 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.275 4.275 10 S 0.087 5.913 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C -0.175 4.175 20 C -0.112 4.112 21 N -0.207 5.207 22 C -0.012 4.012 23 C -0.036 4.036 24 N -0.258 5.258 25 C -0.104 4.104 26 N -0.144 5.144 27 N -0.167 5.167 28 C -0.054 4.054 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.230 0.770 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.235 0.765 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.289 -4.527 29.439 29.813 hybrid contribution 1.039 2.023 -0.228 2.285 sum -0.250 -2.504 29.211 29.319 Atomic orbital electron populations 1.21634 0.92365 1.02519 1.02336 1.23113 0.97544 0.96767 0.88609 0.90677 1.21656 0.96559 0.91501 0.86227 0.88012 1.46088 1.72449 1.13423 1.06512 1.20275 0.76193 0.88911 0.82712 1.90698 1.47341 1.18353 1.82622 1.23284 1.04982 1.01543 0.97710 1.84763 1.91385 1.17977 0.97225 1.22321 1.53892 0.96723 0.94010 0.89424 1.24715 0.93306 0.97479 0.95807 1.69943 1.45559 1.31713 1.04498 0.86731 0.79501 0.85112 0.80486 1.19165 1.19940 1.15922 1.22767 0.98858 1.01988 0.93877 1.23508 0.89817 1.00585 0.97311 1.65743 1.18015 1.34123 1.02794 1.21229 1.03131 0.82030 0.94787 1.25438 0.82155 0.98603 0.97386 1.70593 1.34027 0.98979 1.22170 1.26074 0.86152 0.99813 0.98380 1.78117 1.22869 0.91374 1.22071 1.50372 1.07606 1.09513 1.49172 1.22112 0.88195 0.93758 1.01341 0.91713 0.91897 0.91886 0.76982 0.88500 0.88644 0.91933 0.89858 0.90558 0.89203 0.93404 0.86453 0.88385 0.76485 0.89582 0.88615 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.33 37.15 0.35 -0.87 16 2 C 0.05 0.46 2.32 -66.05 -0.15 0.30 16 3 H 0.08 0.80 4.83 -51.93 -0.25 0.55 16 4 C 0.15 1.71 2.91 -66.55 -0.19 1.51 16 5 H 0.10 1.39 7.36 -51.93 -0.38 1.01 16 6 N -0.73 -9.68 5.04 -52.46 -0.26 -9.95 16 7 C 0.53 9.50 7.84 -10.98 -0.09 9.41 16 8 O -0.52 -11.01 15.56 5.56 0.09 -10.92 16 9 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 10 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 11 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 12 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 13 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 14 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 15 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 19 C -0.14 -1.39 6.78 -25.35 -0.17 -1.56 16 20 C 0.02 0.11 6.24 -2.18 -0.01 0.10 16 21 N -0.48 -3.68 5.33 -223.54 -1.19 -4.88 16 22 C 0.12 0.73 5.77 -4.98 -0.03 0.70 16 23 C 0.24 2.02 5.16 -155.70 -0.80 1.22 16 24 N -0.53 -5.30 9.93 -11.97 -0.12 -5.42 16 25 C 0.20 1.91 13.03 -91.81 -1.20 0.71 16 26 N -0.32 -3.31 12.70 29.29 0.37 -2.94 16 27 N -0.38 -3.08 3.76 -65.10 -0.24 -3.33 16 28 C 0.09 0.38 9.98 59.85 0.60 0.98 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.55 7.98 -51.93 -0.41 0.13 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.40 4.59 8.35 -40.82 -0.34 4.25 16 33 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 34 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.33 3.57 -51.93 -0.19 0.15 16 40 H 0.12 0.68 8.00 -51.93 -0.42 0.26 16 41 H 0.10 0.34 7.06 -51.93 -0.37 -0.02 16 42 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.09 0.35 6.54 -51.93 -0.34 0.01 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.16 7.10 -51.93 -0.37 -0.21 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -36.23 374.72 -9.35 -45.58 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.44 Total: 2.41 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.27 Total: -1.85 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.67 Total: -52.48 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.23 -9.35 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566080413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.484 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds