Wall clock time and date at job start Sat Apr 11 2020 05:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47680 * 2 1 4 4 N 1.46903 * 109.47049 * 120.00213 * 2 1 3 5 5 C 1.46905 * 110.99622 * 274.99992 * 4 2 1 6 6 H 1.09002 * 112.85115 * 334.66353 * 5 4 2 7 7 C 1.53785 * 113.69113 * 105.93557 * 5 4 2 8 8 C 1.53779 * 87.08093 * 139.98964 * 7 5 4 9 9 H 1.08999 * 113.68761 * 220.00455 * 8 7 5 10 10 N 1.46504 * 113.61484 * 89.11287 * 8 7 5 11 11 C 1.34781 * 119.99665 * 107.49929 * 10 8 7 12 12 O 1.21280 * 119.99730 * 0.02562 * 11 10 8 13 13 C 1.50696 * 119.99783 * 179.97438 * 11 10 8 14 14 S 1.80998 * 109.47045 * 180.02562 * 13 11 10 15 15 C 1.76204 * 100.00107 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99662 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99973 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47131 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47033 * 119.99828 * 19 17 15 22 22 H 1.48496 * 109.47052 * 239.99576 * 19 17 15 23 23 C 1.53781 * 113.61177 * 203.47134 * 5 4 2 24 24 C 1.50700 * 109.47336 * 239.99792 * 2 1 3 25 25 N 1.30524 * 126.34523 * 284.69708 * 24 2 1 26 26 N 1.28604 * 109.67135 * 179.82100 * 25 24 2 27 27 C 1.30523 * 109.66892 * 0.44455 * 26 25 24 28 28 N 1.35494 * 126.34577 * 104.99818 * 24 2 1 29 29 C 1.46499 * 126.98149 * 0.02562 * 28 24 2 30 30 H 1.09004 * 109.46655 * 60.00043 * 1 2 3 31 31 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47479 * 300.00327 * 1 2 3 33 33 H 1.00897 * 111.00055 * 38.94608 * 4 2 1 34 34 H 1.09003 * 113.60734 * 254.54083 * 7 5 4 35 35 H 1.08996 * 113.61146 * 25.43581 * 7 5 4 36 36 H 0.96996 * 119.99953 * 287.50554 * 10 8 7 37 37 H 1.09003 * 109.47145 * 300.00264 * 13 11 10 38 38 H 1.09007 * 109.47317 * 60.00401 * 13 11 10 39 39 H 0.97001 * 120.00434 * 179.97438 * 18 17 15 40 40 H 1.09005 * 113.61302 * 334.47923 * 23 5 4 41 41 H 1.08993 * 113.62030 * 105.38769 * 23 5 4 42 42 H 1.08004 * 126.33924 * 179.72590 * 27 26 25 43 43 H 1.09003 * 109.47247 * 89.99545 * 29 28 24 44 44 H 1.09002 * 109.46848 * 209.99400 * 29 28 24 45 45 H 1.08997 * 109.46705 * 329.99353 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2226 2.3469 6 1 2.1949 1.2656 2.0509 7 6 0.9687 -0.0072 3.3822 8 6 2.0321 0.2409 4.4649 9 1 1.9448 -0.4233 5.3248 10 7 2.1649 1.6494 4.8453 11 6 1.7054 2.0710 6.0401 12 8 1.1824 1.2842 6.8005 13 6 1.8425 3.5198 6.4316 14 16 1.1366 3.7688 8.0795 15 6 1.4233 5.4961 8.2774 16 1 1.9088 6.0563 7.4919 17 6 1.0262 6.1365 9.4430 18 7 0.4350 5.4536 10.4004 19 14 1.3296 7.9678 9.6524 20 1 2.0043 8.4994 8.4411 21 1 0.0328 8.6656 9.8438 22 1 2.1932 8.1939 10.8390 23 6 3.0761 -0.2198 3.4340 24 6 2.0324 -0.7104 -1.2304 25 7 2.0388 -2.0002 -1.4305 26 7 2.5343 -2.2561 -2.5893 27 6 2.8751 -1.1417 -3.1772 28 7 2.5663 -0.1290 -2.3316 29 6 2.7691 1.3036 -2.5612 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.4495 -1.4979 1.4101 34 1 0.1860 0.7511 3.3569 35 1 0.5749 -1.0236 3.3815 36 1 2.5835 2.2786 4.2371 37 1 2.8972 3.7948 6.4431 38 1 1.3124 4.1427 5.7110 39 1 0.1578 5.9010 11.2152 40 1 3.2584 -1.2944 3.4476 41 1 3.9946 0.3666 3.4508 42 1 3.3208 -1.0449 -4.1562 43 1 3.7553 1.5937 -2.1987 44 1 2.6978 1.5142 -3.6283 45 1 2.0050 1.8687 -2.0275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566782672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:48 Heat of formation + Delta-G solvation = 69.095531 kcal Electronic energy + Delta-G solvation = -25987.659276 eV Core-core repulsion = 22168.791320 eV Total energy + Delta-G solvation = -3818.867956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.45101 -40.29478 -38.45285 -36.31414 -35.36575 -33.06148 -32.45794 -30.80561 -29.47841 -28.70555 -28.13434 -25.92041 -25.53449 -24.61642 -23.46770 -22.56192 -21.07439 -20.60054 -19.57494 -17.88053 -17.65075 -16.82509 -16.68583 -16.14633 -15.96060 -15.74485 -15.09999 -14.96272 -14.83423 -14.76020 -14.15401 -14.08639 -13.79953 -13.60583 -13.47495 -13.18879 -12.89871 -12.70128 -12.65207 -12.58520 -12.03407 -11.96608 -11.84813 -11.73210 -11.10095 -11.05136 -10.96476 -10.79076 -10.65982 -10.61312 -10.54845 -9.83519 -9.55891 -9.44689 -9.10862 -8.98672 -8.76001 -8.26319 -6.53135 -6.24690 -3.95392 1.42019 2.01077 2.58751 2.97864 3.02622 3.18955 3.25471 3.29620 3.59696 3.66374 3.85534 4.04324 4.17199 4.17605 4.28660 4.36214 4.38802 4.45574 4.61650 4.71119 4.73169 4.74640 4.99152 5.03778 5.10081 5.10699 5.25659 5.36769 5.47433 5.50297 5.56247 5.61447 5.64573 5.76743 5.78391 5.81859 5.84663 5.98324 6.09273 6.39311 6.54780 6.71680 6.94344 7.56734 7.66497 8.32269 8.43238 8.57481 9.20729 10.82766 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.001774 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.261204 B =15776.351419 C =16509.682259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.174 3.826 3 H 0.092 0.908 4 N -0.663 5.663 5 C 0.068 3.932 6 H 0.096 0.904 7 C -0.180 4.180 8 C 0.125 3.875 9 H 0.105 0.895 10 N -0.722 5.722 11 C 0.534 3.466 12 O -0.514 6.514 13 C -0.154 4.154 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.133 4.133 24 C 0.191 3.809 25 N -0.280 5.280 26 N -0.298 5.298 27 C 0.144 3.856 28 N -0.477 5.477 29 C 0.070 3.930 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.358 0.642 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.217 0.783 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -7.521 -28.725 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.061 3.939 3 H 0.110 0.890 4 N -0.294 5.294 5 C -0.042 4.042 6 H 0.114 0.886 7 C -0.221 4.221 8 C 0.018 3.982 9 H 0.123 0.877 10 N -0.375 5.375 11 C 0.320 3.680 12 O -0.388 6.388 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.172 4.172 24 C -0.077 4.077 25 N -0.120 5.120 26 N -0.138 5.138 27 C -0.144 4.144 28 N -0.169 5.169 29 C -0.073 4.073 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.233 0.767 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.500 -10.236 -27.210 29.417 hybrid contribution 0.378 3.988 -1.319 4.217 sum 4.878 -6.248 -28.528 29.609 Atomic orbital electron populations 1.22520 0.94485 1.03784 1.02992 1.19755 0.93398 0.95631 0.85096 0.88956 1.60223 1.57516 1.09402 1.02289 1.23203 0.96624 0.96053 0.88357 0.88571 1.24193 0.97964 1.02834 0.97083 1.21614 0.95717 0.83869 0.97031 0.87688 1.45716 1.63348 1.09172 1.19284 1.20333 0.76983 0.90237 0.80420 1.90706 1.41626 1.55927 1.50549 1.23533 1.05558 0.94362 1.06969 1.85428 1.76981 1.11191 1.09718 1.22904 1.45763 0.93777 1.05953 0.90887 1.24996 0.94554 0.99226 0.94834 1.70022 1.37487 1.36196 1.06505 0.86115 0.78123 0.82969 0.78272 1.19644 1.20565 1.20546 1.23452 0.97401 1.02809 0.93496 1.24768 1.00833 0.91093 0.91045 1.74225 1.17576 1.10757 1.09423 1.74287 1.14330 1.23034 1.02109 1.26428 1.04758 0.83631 0.99535 1.46178 1.46431 1.09368 1.14891 1.22138 1.04019 0.76770 1.04366 0.92081 0.91025 0.90807 0.82060 0.90829 0.88918 0.76928 0.89192 0.89284 0.92204 0.88286 0.90727 0.76668 0.89708 0.88802 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 9.15 37.16 0.34 -0.73 16 2 C 0.17 1.14 2.89 -68.86 -0.20 0.94 16 3 H 0.09 0.45 6.56 -51.93 -0.34 0.11 16 4 N -0.66 -4.97 6.34 -100.10 -0.63 -5.61 16 5 C 0.07 0.48 3.86 -66.90 -0.26 0.22 16 6 H 0.10 0.59 7.49 -51.93 -0.39 0.20 16 7 C -0.18 -1.55 7.39 -25.92 -0.19 -1.74 16 8 C 0.12 1.34 4.32 -67.11 -0.29 1.05 16 9 H 0.11 1.38 7.46 -51.93 -0.39 0.99 16 10 N -0.72 -8.82 5.26 -53.01 -0.28 -9.10 16 11 C 0.53 9.52 7.85 -10.99 -0.09 9.43 16 12 O -0.51 -11.38 15.46 5.56 0.09 -11.30 16 13 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 15 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 18 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 19 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.13 -1.08 7.63 -25.92 -0.20 -1.28 16 24 C 0.19 1.67 6.87 -154.98 -1.07 0.61 16 25 N -0.28 -3.39 12.21 32.80 0.40 -2.99 16 26 N -0.30 -3.50 12.21 29.69 0.36 -3.14 16 27 C 0.14 1.05 12.74 -89.94 -1.15 -0.09 16 28 N -0.48 -3.01 3.15 -122.68 -0.39 -3.40 16 29 C 0.07 0.12 10.84 59.85 0.65 0.77 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.07 0.42 7.95 -51.93 -0.41 0.01 16 33 H 0.36 2.81 7.95 -39.29 -0.31 2.50 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.74 7.83 -51.93 -0.41 0.34 16 36 H 0.40 3.65 8.70 -40.82 -0.36 3.30 16 37 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 38 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.22 0.60 8.06 -52.48 -0.42 0.17 16 43 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 45 H 0.09 0.07 7.46 -51.93 -0.39 -0.31 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -38.20 392.84 -9.82 -48.02 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.76 Total: 0.82 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.03 Total: -6.35 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.20 Total: -49.39 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.20 -9.82 -48.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.120 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds