Wall clock time and date at job start Sat Apr 11 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 239.99970 * 2 1 3 5 5 C 1.46898 * 110.99771 * 85.00049 * 4 2 1 6 6 H 1.09000 * 112.85321 * 23.80879 * 5 4 2 7 7 C 1.53785 * 113.60922 * 154.99731 * 5 4 2 8 8 C 1.53780 * 87.07739 * 139.98218 * 7 5 4 9 9 H 1.09001 * 113.61867 * 89.20326 * 8 7 5 10 10 N 1.46504 * 113.61503 * 220.02031 * 8 7 5 11 11 C 1.34777 * 120.00053 * 205.00126 * 10 8 7 12 12 O 1.21283 * 119.99996 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99849 * 179.97438 * 11 10 8 14 14 S 1.80996 * 109.47008 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00129 * 180.02562 * 14 13 11 16 16 H 1.07990 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00113 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47123 * 90.00150 * 19 17 15 21 21 H 1.48507 * 109.47174 * 209.99946 * 19 17 15 22 22 H 1.48499 * 109.47148 * 330.00007 * 19 17 15 23 23 C 1.53774 * 87.08394 * 334.56601 * 8 7 5 24 24 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 25 25 N 1.30520 * 126.34754 * 74.69184 * 24 2 1 26 26 N 1.28600 * 109.67347 * 179.82671 * 25 24 2 27 27 C 1.30526 * 109.67036 * 0.44253 * 26 25 24 28 28 N 1.35491 * 107.30865 * 359.73449 * 27 26 25 29 29 C 1.46498 * 126.98017 * 179.97438 * 28 27 26 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 33 33 H 1.00901 * 110.99931 * 208.95582 * 4 2 1 34 34 H 1.09001 * 113.61612 * 254.52576 * 7 5 4 35 35 H 1.09005 * 113.61465 * 25.43730 * 7 5 4 36 36 H 0.97001 * 119.99904 * 24.99965 * 10 8 7 37 37 H 1.08998 * 109.47125 * 300.00139 * 13 11 10 38 38 H 1.09007 * 109.46988 * 60.00110 * 13 11 10 39 39 H 0.97001 * 119.99814 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.61981 * 270.88812 * 23 8 7 41 41 H 1.09000 * 113.61517 * 139.98005 * 23 8 7 42 42 H 1.07993 * 126.34035 * 179.73108 * 27 26 25 43 43 H 1.08999 * 109.46839 * 269.99817 * 29 28 27 44 44 H 1.08996 * 109.47387 * 29.99793 * 29 28 27 45 45 H 1.08998 * 109.47177 * 149.99926 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 1 2.1684 1.2680 -2.0503 7 6 3.1033 -0.2001 -3.4166 8 6 2.0664 0.2357 -4.4654 9 1 2.1478 1.2847 -4.7503 10 7 1.9862 -0.6627 -5.6198 11 6 1.5416 -0.1992 -6.8048 12 8 1.2075 0.9615 -6.9152 13 6 1.4596 -1.1232 -7.9924 14 16 0.8296 -0.2117 -9.4236 15 6 0.8358 -1.4952 -10.6308 16 1 1.1684 -2.4870 -10.3627 17 6 0.4131 -1.2315 -11.9263 18 7 0.0082 -0.0225 -12.2532 19 14 0.4190 -2.5925 -13.2059 20 1 -0.8892 -3.2950 -13.1873 21 1 0.6469 -2.0061 -14.5511 22 1 1.5039 -3.5581 -12.8965 23 6 0.9912 -0.0335 -3.3995 24 6 2.0323 -0.7104 1.2305 25 7 2.0285 -1.9994 1.4352 26 7 2.5342 -2.2560 2.5894 27 6 2.8751 -1.1415 3.1773 28 7 2.5663 -0.1289 2.3317 29 6 2.7682 1.3038 2.5617 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9174 -1.1205 -1.0287 34 1 4.0089 0.4065 -3.4198 35 1 3.3093 -1.2704 -3.4248 36 1 2.2530 -1.5910 -5.5314 37 1 2.4518 -1.5139 -8.2180 38 1 0.7869 -1.9499 -7.7638 39 1 -0.2875 0.1617 -13.1585 40 1 0.6198 -1.0583 -3.4030 41 1 0.1918 0.7074 -3.3888 42 1 3.3206 -1.0447 4.1563 43 1 1.8822 1.7237 3.0379 44 1 3.6325 1.4495 3.2096 45 1 2.9400 1.8040 1.6086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566831883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:53 Heat of formation + Delta-G solvation = 69.966293 kcal Electronic energy + Delta-G solvation = -25777.366612 eV Core-core repulsion = 21958.536415 eV Total energy + Delta-G solvation = -3818.830197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59175 -40.08279 -38.40926 -36.26543 -35.44700 -33.14988 -32.40686 -30.85846 -29.60077 -28.83898 -28.24432 -25.89520 -25.48741 -24.59041 -23.20359 -22.58134 -20.75514 -20.30341 -19.92175 -17.82593 -17.70439 -16.94118 -16.67302 -16.33393 -16.28488 -15.66607 -15.34471 -14.92339 -14.80473 -14.77826 -14.25523 -14.06001 -13.83496 -13.57624 -13.14969 -12.97360 -12.72368 -12.63096 -12.52763 -12.49167 -12.10895 -11.87310 -11.70457 -11.43721 -11.07651 -11.04410 -10.99255 -10.80197 -10.74589 -10.71631 -10.69952 -9.79040 -9.69092 -9.34748 -9.04883 -8.97348 -8.75291 -8.21281 -6.47536 -6.19679 -3.89909 1.28260 1.89026 2.47213 3.06124 3.10064 3.24325 3.29668 3.33680 3.55202 3.65497 3.84139 3.94934 4.10229 4.22162 4.22706 4.26887 4.36185 4.45519 4.63851 4.65184 4.79885 4.80501 4.94188 5.13917 5.15612 5.18288 5.25256 5.38706 5.45210 5.46718 5.58809 5.64296 5.68136 5.81693 5.87972 5.92853 5.95392 6.10230 6.18180 6.28892 6.63648 6.72685 6.87643 7.61961 7.76651 8.31924 8.37539 8.65087 9.25823 10.87767 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033587 B = 0.001607 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.464677 B =17415.507525 C =17761.652647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.655 5.655 5 C 0.060 3.940 6 H 0.077 0.923 7 C -0.149 4.149 8 C 0.128 3.872 9 H 0.114 0.886 10 N -0.726 5.726 11 C 0.533 3.467 12 O -0.520 6.520 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.136 4.136 24 C 0.166 3.834 25 N -0.267 5.267 26 N -0.297 5.297 27 C 0.147 3.853 28 N -0.477 5.477 29 C 0.070 3.930 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.219 0.781 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 3.534 33.070 34.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.076 0.924 4 N -0.288 5.288 5 C -0.051 4.051 6 H 0.095 0.905 7 C -0.188 4.188 8 C 0.021 3.979 9 H 0.132 0.868 10 N -0.379 5.379 11 C 0.320 3.680 12 O -0.394 6.394 13 C -0.305 4.305 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.176 4.176 24 C -0.102 4.102 25 N -0.107 5.107 26 N -0.137 5.137 27 C -0.140 4.140 28 N -0.169 5.169 29 C -0.074 4.074 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.235 0.765 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.296 3.884 32.347 33.183 hybrid contribution 1.587 -0.673 0.092 1.726 sum 7.883 3.212 32.440 33.538 Atomic orbital electron populations 1.21796 0.91925 1.03966 1.01790 1.19910 0.96988 0.93398 0.83058 0.92355 1.60604 1.33936 1.31700 1.02523 1.22973 0.98183 0.94679 0.89227 0.90479 1.23644 0.97410 1.02737 0.95043 1.22187 0.95727 0.96152 0.83830 0.86842 1.45941 1.68575 1.13655 1.09730 1.20337 0.75755 0.88621 0.83303 1.90687 1.46776 1.18055 1.83886 1.23543 1.05324 1.02591 0.99047 1.85368 1.83911 1.15383 0.98786 1.22877 1.50931 0.97605 0.96932 0.90914 1.24988 0.94563 0.96315 0.97710 1.70019 1.40749 1.19612 1.19956 0.86171 0.78604 0.80894 0.79846 1.20262 1.20773 1.19700 1.23603 0.97001 1.03460 0.93491 1.24981 1.01865 0.91408 0.91962 1.74359 1.16286 1.10569 1.09505 1.74356 1.14066 1.22957 1.02279 1.26504 1.04508 0.83561 0.99412 1.46257 1.46392 1.09456 1.14768 1.22159 1.04076 0.76694 1.04432 0.90929 0.90625 0.92831 0.83062 0.90843 0.88679 0.76624 0.89244 0.89165 0.92215 0.88568 0.91166 0.76500 0.89632 0.88689 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.40 37.16 0.35 -0.62 16 2 C 0.18 1.20 3.00 -68.86 -0.21 0.99 16 3 H 0.06 0.27 6.22 -51.93 -0.32 -0.05 16 4 N -0.65 -5.01 6.36 -100.10 -0.64 -5.65 16 5 C 0.06 0.43 3.96 -66.90 -0.27 0.17 16 6 H 0.08 0.48 7.48 -51.93 -0.39 0.09 16 7 C -0.15 -1.16 7.40 -25.92 -0.19 -1.35 16 8 C 0.13 1.40 4.24 -67.12 -0.28 1.12 16 9 H 0.11 1.44 7.46 -51.93 -0.39 1.05 16 10 N -0.73 -9.53 5.35 -53.02 -0.28 -9.82 16 11 C 0.53 9.88 7.85 -10.98 -0.09 9.80 16 12 O -0.52 -11.67 15.46 5.56 0.09 -11.59 16 13 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 19 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 C -0.14 -1.32 7.68 -25.92 -0.20 -1.52 16 24 C 0.17 1.36 6.52 -154.98 -1.01 0.35 16 25 N -0.27 -3.14 12.21 32.80 0.40 -2.74 16 26 N -0.30 -3.31 12.21 29.69 0.36 -2.94 16 27 C 0.15 0.96 12.74 -89.94 -1.15 -0.19 16 28 N -0.48 -2.63 3.15 -122.69 -0.39 -3.01 16 29 C 0.07 0.07 11.00 59.85 0.66 0.72 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 2.78 8.16 -39.29 -0.32 2.45 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.40 4.21 8.73 -40.82 -0.36 3.85 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.22 0.43 8.06 -52.49 -0.42 0.00 16 43 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 44 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 45 H 0.09 0.03 7.06 -51.93 -0.37 -0.34 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -38.39 393.11 -9.75 -48.14 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.75 Total: 1.05 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.96 Total: -6.47 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.19 Total: -49.70 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.39 -9.75 -48.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566831883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.106 kcal (2) G-P(sol) polarization free energy of solvation -38.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds