Wall clock time and date at job start Sat Apr 11 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 239.99970 * 2 1 3 5 5 C 1.46898 * 110.99771 * 85.00049 * 4 2 1 6 6 H 1.09000 * 112.85321 * 23.80879 * 5 4 2 7 7 C 1.53785 * 113.60922 * 154.99731 * 5 4 2 8 8 C 1.53780 * 87.07739 * 139.98218 * 7 5 4 9 9 H 1.09001 * 113.61867 * 89.20326 * 8 7 5 10 10 N 1.46504 * 113.61503 * 220.02031 * 8 7 5 11 11 C 1.34777 * 120.00053 * 205.00126 * 10 8 7 12 12 O 1.21283 * 119.99996 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99849 * 179.97438 * 11 10 8 14 14 S 1.80996 * 109.47008 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00129 * 180.02562 * 14 13 11 16 16 H 1.07990 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00113 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47123 * 90.00150 * 19 17 15 21 21 H 1.48507 * 109.47174 * 209.99946 * 19 17 15 22 22 H 1.48499 * 109.47148 * 330.00007 * 19 17 15 23 23 C 1.53774 * 87.08394 * 334.56601 * 8 7 5 24 24 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 25 25 N 1.30520 * 126.34754 * 74.69184 * 24 2 1 26 26 N 1.28600 * 109.67347 * 179.82671 * 25 24 2 27 27 C 1.30526 * 109.67036 * 0.44253 * 26 25 24 28 28 N 1.35491 * 107.30865 * 359.73449 * 27 26 25 29 29 C 1.46498 * 126.98017 * 179.97438 * 28 27 26 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 33 33 H 1.00901 * 110.99931 * 208.95582 * 4 2 1 34 34 H 1.09001 * 113.61612 * 254.52576 * 7 5 4 35 35 H 1.09005 * 113.61465 * 25.43730 * 7 5 4 36 36 H 0.97001 * 119.99904 * 24.99965 * 10 8 7 37 37 H 1.08998 * 109.47125 * 300.00139 * 13 11 10 38 38 H 1.09007 * 109.46988 * 60.00110 * 13 11 10 39 39 H 0.97001 * 119.99814 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.61981 * 270.88812 * 23 8 7 41 41 H 1.09000 * 113.61517 * 139.98005 * 23 8 7 42 42 H 1.07993 * 126.34035 * 179.73108 * 27 26 25 43 43 H 1.08999 * 109.46839 * 269.99817 * 29 28 27 44 44 H 1.08996 * 109.47387 * 29.99793 * 29 28 27 45 45 H 1.08998 * 109.47177 * 149.99926 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 1 2.1684 1.2680 -2.0503 7 6 3.1033 -0.2001 -3.4166 8 6 2.0664 0.2357 -4.4654 9 1 2.1478 1.2847 -4.7503 10 7 1.9862 -0.6627 -5.6198 11 6 1.5416 -0.1992 -6.8048 12 8 1.2075 0.9615 -6.9152 13 6 1.4596 -1.1232 -7.9924 14 16 0.8296 -0.2117 -9.4236 15 6 0.8358 -1.4952 -10.6308 16 1 1.1684 -2.4870 -10.3627 17 6 0.4131 -1.2315 -11.9263 18 7 0.0082 -0.0225 -12.2532 19 14 0.4190 -2.5925 -13.2059 20 1 -0.8892 -3.2950 -13.1873 21 1 0.6469 -2.0061 -14.5511 22 1 1.5039 -3.5581 -12.8965 23 6 0.9912 -0.0335 -3.3995 24 6 2.0323 -0.7104 1.2305 25 7 2.0285 -1.9994 1.4352 26 7 2.5342 -2.2560 2.5894 27 6 2.8751 -1.1415 3.1773 28 7 2.5663 -0.1289 2.3317 29 6 2.7682 1.3038 2.5617 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9174 -1.1205 -1.0287 34 1 4.0089 0.4065 -3.4198 35 1 3.3093 -1.2704 -3.4248 36 1 2.2530 -1.5910 -5.5314 37 1 2.4518 -1.5139 -8.2180 38 1 0.7869 -1.9499 -7.7638 39 1 -0.2875 0.1617 -13.1585 40 1 0.6198 -1.0583 -3.4030 41 1 0.1918 0.7074 -3.3888 42 1 3.3206 -1.0447 4.1563 43 1 1.8822 1.7237 3.0379 44 1 3.6325 1.4495 3.2096 45 1 2.9400 1.8040 1.6086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566831883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:51 Heat of formation + Delta-G solvation = 41.930833 kcal Electronic energy + Delta-G solvation = -25778.582321 eV Core-core repulsion = 21958.536415 eV Total energy + Delta-G solvation = -3820.045906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.11238 -41.10220 -39.56850 -36.96470 -35.88722 -34.58476 -34.32085 -31.63031 -30.56378 -29.91051 -28.44877 -27.66777 -26.61875 -25.27651 -23.91869 -23.15340 -21.71167 -21.18878 -20.73840 -19.73961 -18.17248 -17.88409 -17.54051 -17.28648 -16.89179 -16.87279 -16.37321 -16.30988 -16.23785 -15.69225 -15.33545 -14.96417 -14.56891 -14.44355 -14.26733 -13.82909 -13.71322 -13.49445 -13.34284 -13.20771 -13.15679 -13.06749 -12.88633 -12.64002 -12.61059 -12.40377 -12.14154 -11.88108 -11.67355 -11.53734 -11.29805 -11.13678 -11.09611 -10.86918 -10.29598 -10.26887 -9.98493 -9.46829 -8.65438 -8.34094 -6.11850 0.82019 1.28361 1.42869 1.47871 1.55240 1.59110 1.63141 1.88137 2.27331 2.34671 2.99985 3.07568 3.16039 3.34153 3.53908 3.59671 3.77627 3.85237 3.93766 3.97098 4.03183 4.05759 4.24344 4.32662 4.36806 4.46417 4.52590 4.53486 4.68246 4.70904 4.82109 4.86081 4.89981 4.90392 5.07312 5.09933 5.14977 5.21435 5.34687 5.42646 5.62973 5.92265 6.07978 6.20561 6.29434 6.56317 7.07304 7.28767 7.75927 8.75135 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033587 B = 0.001607 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.464677 B =17415.507525 C =17761.652647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.182 3.818 3 H 0.088 0.912 4 N -0.665 5.665 5 C 0.077 3.923 6 H 0.097 0.903 7 C -0.132 4.132 8 C 0.113 3.887 9 H 0.097 0.903 10 N -0.702 5.702 11 C 0.535 3.465 12 O -0.566 6.566 13 C -0.132 4.132 14 S -0.150 6.150 15 C -0.548 4.548 16 H 0.082 0.918 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.259 1.259 23 C -0.136 4.136 24 C 0.164 3.836 25 N -0.318 5.318 26 N -0.354 5.354 27 C 0.161 3.839 28 N -0.472 5.472 29 C 0.060 3.940 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.259 0.741 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 3.225 34.926 36.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 H 0.106 0.894 4 N -0.298 5.298 5 C -0.034 4.034 6 H 0.115 0.885 7 C -0.171 4.171 8 C 0.007 3.993 9 H 0.115 0.885 10 N -0.354 5.354 11 C 0.321 3.679 12 O -0.445 6.445 13 C -0.283 4.283 14 S 0.077 5.923 15 C -0.696 4.696 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.183 1.183 23 C -0.176 4.176 24 C -0.106 4.106 25 N -0.158 5.158 26 N -0.193 5.193 27 C -0.127 4.127 28 N -0.162 5.162 29 C -0.081 4.081 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.275 0.725 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.850 3.555 34.265 35.332 hybrid contribution 1.133 -0.534 -0.291 1.286 sum 8.983 3.021 33.974 35.271 Atomic orbital electron populations 1.21750 0.92544 1.02370 1.02448 1.19968 0.96407 0.94505 0.82148 0.89425 1.60489 1.34054 1.32213 1.03062 1.22833 0.96232 0.95604 0.88682 0.88525 1.23555 0.97205 1.03355 0.92967 1.22434 0.98429 0.95058 0.83369 0.88495 1.45747 1.66329 1.14757 1.08579 1.20050 0.75967 0.87594 0.84265 1.90674 1.49346 1.19750 1.84703 1.23398 1.06137 1.02203 0.96564 1.85521 1.85140 1.18611 1.02984 1.23216 1.51054 0.97817 0.97489 0.90013 1.26114 0.93768 0.99040 1.00158 1.70180 1.41770 1.22100 1.20658 0.84960 0.79171 0.77420 0.76465 1.19350 1.20197 1.18272 1.23562 0.97174 1.02690 0.94126 1.25113 1.01615 0.90875 0.92959 1.74231 1.18167 1.12850 1.10552 1.74233 1.16465 1.25624 1.03004 1.27242 1.02465 0.82753 1.00233 1.46484 1.45118 1.11044 1.13552 1.22557 1.05847 0.73926 1.05776 0.90778 0.93318 0.91624 0.83006 0.89298 0.88035 0.74785 0.87306 0.87468 0.91985 0.89473 0.91875 0.72529 0.88349 0.86205 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.40 71.98 0.68 -1.07 16 2 C 0.18 2.08 3.00 44.17 0.13 2.21 16 3 H 0.09 0.50 6.22 -2.39 -0.01 0.49 16 4 N -0.66 -9.05 6.36 -470.60 -2.99 -12.05 16 5 C 0.08 0.94 3.96 45.44 0.18 1.12 16 6 H 0.10 0.87 7.48 -2.39 -0.02 0.85 16 7 C -0.13 -1.72 7.40 31.12 0.23 -1.49 16 8 C 0.11 2.34 4.24 45.51 0.19 2.53 16 9 H 0.10 2.42 7.46 -2.39 -0.02 2.40 16 10 N -0.70 -17.59 5.35 -440.03 -2.36 -19.95 16 11 C 0.54 19.77 7.85 87.66 0.69 20.46 16 12 O -0.57 -26.10 15.46 -3.04 -0.05 -26.15 16 13 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 14 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 15 C -0.55 -31.65 9.50 67.95 0.65 -31.00 16 16 H 0.08 4.40 7.80 -2.92 -0.02 4.37 16 17 C 0.01 0.80 5.49 84.86 0.47 1.27 16 18 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 19 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 C -0.14 -2.49 7.68 31.12 0.24 -2.25 16 24 C 0.16 2.48 6.52 137.98 0.90 3.38 16 25 N -0.32 -7.51 12.21 -50.15 -0.61 -8.12 16 26 N -0.35 -7.83 12.21 -59.99 -0.73 -8.57 16 27 C 0.16 1.80 12.74 180.11 2.30 4.10 16 28 N -0.47 -4.04 3.15 -542.09 -1.71 -5.75 16 29 C 0.06 -0.11 11.00 127.77 1.41 1.30 16 30 H 0.07 0.94 8.07 -2.39 -0.02 0.92 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.35 4.96 8.16 -89.69 -0.73 4.23 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 1.25 8.12 -2.38 -0.02 1.23 16 36 H 0.42 7.88 8.73 -92.71 -0.81 7.07 16 37 H 0.11 3.93 8.14 -2.40 -0.02 3.92 16 38 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.26 0.20 8.06 -2.91 -0.02 0.18 16 43 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.10 -0.35 7.06 -2.39 -0.02 -0.37 16 Total: -1.00 -88.62 393.11 0.68 -87.94 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.52 Total: 16.41 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 8.49 Total: -4.29 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -8.11 Total: -110.40 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.15 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -88.62 0.68 -87.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566831883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.875 kcal (2) G-P(sol) polarization free energy of solvation -88.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds