Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 N 1.46506 * 109.46984 * 184.49151 * 3 2 1 5 5 C 1.34776 * 119.99706 * 83.16767 * 4 3 2 6 6 O 1.21696 * 119.99560 * 181.76040 * 5 4 3 7 7 C 1.46665 * 120.00241 * 1.76294 * 5 4 3 8 8 C 1.37886 * 126.22591 * 349.04529 * 7 5 4 9 9 C 1.39888 * 107.09973 * 179.73925 * 8 7 5 10 10 Cl 1.73597 * 126.07601 * 180.02562 * 9 8 7 11 11 C 1.35516 * 107.85074 * 359.97438 * 9 8 7 12 12 N 1.35639 * 108.85065 * 0.02562 * 11 9 8 13 13 C 1.46500 * 125.67547 * 180.02562 * 12 11 9 14 14 C 1.46498 * 119.99877 * 263.17120 * 4 3 2 15 15 H 1.08996 * 110.88884 * 10.42056 * 14 4 3 16 16 C 1.55156 * 111.00223 * 246.54141 * 14 4 3 17 17 C 1.54323 * 102.94336 * 277.42939 * 16 14 4 18 18 N 1.47026 * 107.27054 * 337.80788 * 17 16 14 19 19 C 1.36939 * 125.64592 * 178.98322 * 18 17 16 20 20 H 1.08005 * 119.99462 * 179.97438 * 19 18 17 21 21 C 1.38800 * 120.00289 * 359.96858 * 19 18 17 22 22 N 1.31619 * 120.00164 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46899 * 90.00123 * 23 21 19 25 25 H 1.48497 * 109.47288 * 210.00168 * 23 21 19 26 26 H 1.48495 * 109.47274 * 330.00365 * 23 21 19 27 27 C 1.47525 * 108.71544 * 358.94293 * 18 17 16 28 28 H 1.09008 * 109.46776 * 305.01011 * 1 2 3 29 29 H 1.08997 * 109.47144 * 65.00743 * 1 2 3 30 30 H 1.09003 * 109.47513 * 185.01649 * 1 2 3 31 31 H 1.08997 * 109.47066 * 239.99609 * 2 1 3 32 32 H 1.09005 * 109.46780 * 120.00013 * 2 1 3 33 33 H 1.08997 * 109.47545 * 64.48966 * 3 2 1 34 34 H 1.08998 * 109.47235 * 304.48683 * 3 2 1 35 35 H 1.08002 * 126.44983 * 359.75371 * 8 7 5 36 36 H 1.07993 * 125.57837 * 180.02562 * 11 9 8 37 37 H 1.08992 * 109.47278 * 274.66404 * 13 12 11 38 38 H 1.08998 * 109.47026 * 34.66047 * 13 12 11 39 39 H 1.08998 * 109.46763 * 154.65542 * 13 12 11 40 40 H 1.08998 * 110.72055 * 35.78998 * 16 14 4 41 41 H 1.09001 * 110.72183 * 158.88440 * 16 14 4 42 42 H 1.09002 * 109.88405 * 97.22544 * 17 16 14 43 43 H 1.09001 * 109.88487 * 218.23691 * 17 16 14 44 44 H 0.97006 * 120.00373 * 180.02562 * 22 21 19 45 45 H 1.09009 * 110.36865 * 265.31145 * 27 18 17 46 46 H 1.08995 * 110.41212 * 142.95670 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5011 1.4438 -0.1082 5 6 4.0873 1.3359 -1.3169 6 8 5.3008 1.3048 -1.4040 7 6 3.2630 1.2560 -2.5273 8 6 1.8978 1.0676 -2.5725 9 6 1.5279 1.0610 -3.9216 10 17 -0.0818 0.8582 -4.5392 11 6 2.6492 1.2421 -4.6607 12 7 3.7106 1.3618 -3.8246 13 6 5.1017 1.5699 -4.2342 14 6 4.3247 1.5624 1.0975 15 1 3.7164 1.4562 1.9957 16 6 5.1038 2.9041 1.1090 17 6 6.3338 2.5971 0.2289 18 7 6.5175 1.1384 0.2292 19 6 7.4909 0.4565 -0.4511 20 1 7.5420 -0.6203 -0.3856 21 6 8.4119 1.1493 -1.2248 22 7 8.3499 2.4616 -1.3043 23 14 9.7393 0.2190 -2.1532 24 1 9.2412 -0.1347 -3.5068 25 1 10.9474 1.0735 -2.2780 26 1 10.0844 -1.0212 -1.4131 27 6 5.4802 0.5308 1.0843 28 1 -0.3633 0.5896 0.8418 29 1 -0.3633 0.4342 -0.9314 30 1 -0.3634 -1.0237 0.0899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.7439 1.9326 0.9274 34 1 1.6125 1.9790 -0.8470 35 1 1.2382 0.9479 -1.7257 36 1 2.6910 1.2843 -5.7390 37 1 5.5647 0.6072 -4.4506 38 1 5.1279 2.1945 -5.1272 39 1 5.6473 2.0631 -3.4298 40 1 4.5047 3.7017 0.6697 41 1 5.4071 3.1653 2.1229 42 1 6.1590 2.9486 -0.7879 43 1 7.2167 3.0843 0.6428 44 1 8.9932 2.9457 -1.8453 45 1 5.8627 0.3767 2.0933 46 1 5.1411 -0.4133 0.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567685693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = 112.587515 kcal Electronic energy + Delta-G solvation = -29854.273146 eV Core-core repulsion = 26002.954686 eV Total energy + Delta-G solvation = -3851.318460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38870 -39.40788 -36.40384 -36.25700 -35.86061 -32.99733 -32.29285 -31.49530 -29.27456 -28.74053 -27.23170 -26.26305 -25.66865 -24.35606 -22.64309 -21.45010 -20.94882 -19.86731 -19.76200 -18.38775 -17.03299 -16.50282 -16.11479 -15.50424 -15.39149 -14.92379 -14.44370 -14.34253 -14.14808 -13.65992 -13.57395 -13.36854 -13.12361 -12.76201 -12.67141 -12.53182 -12.03630 -11.90266 -11.82798 -11.68651 -11.58535 -11.42735 -11.26936 -11.21664 -10.80231 -10.74559 -10.72636 -10.63023 -10.57634 -9.98637 -9.93397 -9.69453 -9.43479 -8.70027 -8.42872 -8.40377 -7.95079 -7.79462 -6.25747 -5.43701 -2.68033 1.86259 2.27964 2.65867 3.03695 3.47924 3.54741 3.55361 3.69733 4.00310 4.69003 4.86229 4.96350 5.03821 5.07569 5.16589 5.34451 5.41439 5.45786 5.48008 5.54975 5.65109 5.68648 5.69613 5.77822 5.84247 5.89437 5.98743 6.00159 6.06152 6.16370 6.22694 6.29333 6.40034 6.55140 6.61548 6.64913 6.69546 6.78885 7.07388 7.25706 7.35578 7.75848 7.89088 8.01631 8.11291 8.52776 9.11903 9.49078 10.10779 10.77889 11.69187 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.004895 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.582615 B = 5718.522856 C = 7244.228779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.154 4.154 3 C 0.092 3.908 4 N -0.598 5.598 5 C 0.526 3.474 6 O -0.402 6.402 7 C -0.006 4.006 8 C -0.186 4.186 9 C -0.124 4.124 10 Cl -0.065 7.065 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.066 3.934 14 C 0.137 3.863 15 H 0.083 0.917 16 C -0.161 4.161 17 C 0.194 3.806 18 N -0.565 5.565 19 C -0.183 4.183 20 H 0.065 0.935 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.895 3.105 24 H -0.296 1.296 25 H -0.295 1.295 26 H -0.287 1.287 27 C 0.130 3.870 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.029 0.971 44 H 0.243 0.757 45 H 0.023 0.977 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.097 -0.672 -1.127 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C -0.031 4.031 4 N -0.335 5.335 5 C 0.310 3.690 6 O -0.269 6.269 7 C -0.122 4.122 8 C -0.211 4.211 9 C -0.157 4.157 10 Cl -0.037 7.037 11 C -0.125 4.125 12 N -0.069 5.069 13 C -0.075 4.075 14 C 0.032 3.968 15 H 0.101 0.899 16 C -0.201 4.201 17 C 0.069 3.931 18 N -0.290 5.290 19 C -0.313 4.313 20 H 0.083 0.917 21 C -0.202 4.202 22 N -0.573 5.573 23 Si 0.727 3.273 24 H -0.224 1.224 25 H -0.222 1.222 26 H -0.213 1.213 27 C 0.002 3.998 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.198 0.802 36 H 0.186 0.814 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.888 -0.598 -1.476 15.967 hybrid contribution 0.342 -0.596 -0.870 1.109 sum -15.545 -1.194 -2.346 15.767 Atomic orbital electron populations 1.21777 0.95394 1.02013 1.01891 1.22191 0.95769 0.97899 1.03432 1.22178 0.81142 0.96542 1.03262 1.47399 1.05166 1.75382 1.05519 1.17297 0.88366 0.81266 0.82056 1.91672 1.09630 1.41206 1.84364 1.20658 0.92885 1.12771 0.85881 1.22499 0.93948 1.08282 0.96346 1.19931 0.85530 1.16421 0.93838 1.98288 1.21329 1.96614 1.87475 1.21572 0.85385 1.09271 0.96307 1.43876 1.07856 1.50351 1.04832 1.22415 0.78082 1.03594 1.03384 1.22306 0.91792 0.97359 0.85304 0.89864 1.23399 0.99833 0.95948 1.00893 1.21071 0.90820 0.84638 0.96528 1.44138 1.30860 1.01700 1.52341 1.18790 1.02472 0.89983 1.20012 0.91699 1.24501 0.99329 0.95459 1.00959 1.69958 1.37802 1.04776 1.44747 0.86357 0.82107 0.78596 0.80191 1.22414 1.22183 1.21263 1.21787 0.88909 0.94580 0.94501 0.92541 0.92314 0.92455 0.90662 0.91455 0.90862 0.88971 0.80213 0.81364 0.90334 0.90568 0.86033 0.92456 0.91994 0.92571 0.95277 0.94665 0.95974 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.70 37.16 0.36 -0.98 16 2 C -0.15 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C 0.09 1.12 4.94 -4.04 -0.02 1.10 16 4 N -0.60 -9.68 2.57 -165.21 -0.43 -10.10 16 5 C 0.53 10.09 7.04 -12.86 -0.09 10.00 16 6 O -0.40 -9.36 6.65 5.19 0.03 -9.33 16 7 C -0.01 -0.10 6.68 -81.99 -0.55 -0.65 16 8 C -0.19 -2.69 7.35 -39.09 -0.29 -2.98 16 9 C -0.12 -1.72 6.66 -39.94 -0.27 -1.99 16 10 Cl -0.07 -0.78 29.30 -51.86 -1.52 -2.30 16 11 C 0.01 0.15 11.36 -16.84 -0.19 -0.04 16 12 N -0.40 -6.40 3.16 -120.20 -0.38 -6.78 16 13 C 0.07 1.06 10.62 59.85 0.64 1.69 16 14 C 0.14 2.31 3.76 -65.78 -0.25 2.06 16 15 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 16 C -0.16 -3.00 6.53 -24.90 -0.16 -3.16 16 17 C 0.19 4.71 4.21 -3.06 -0.01 4.70 16 18 N -0.57 -14.21 1.74 -169.99 -0.30 -14.51 16 19 C -0.18 -5.13 8.79 -15.06 -0.13 -5.26 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.22 5.48 -17.44 -0.10 -0.32 16 22 N -0.92 -26.99 10.31 55.49 0.57 -26.42 16 23 Si 0.89 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C 0.13 2.68 6.22 -2.47 -0.02 2.67 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.51 6.98 -51.93 -0.36 0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.99 6.38 -51.93 -0.33 0.66 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 34 H 0.09 1.13 4.79 -51.93 -0.25 0.88 16 35 H 0.18 2.25 1.77 -52.49 -0.09 2.16 16 36 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.12 2.46 6.32 -51.93 -0.33 2.13 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.53 5.75 -51.93 -0.30 1.24 16 43 H 0.03 0.80 7.50 -51.93 -0.39 0.41 16 44 H 0.24 7.02 8.31 -40.82 -0.34 6.69 16 45 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -31.36 361.97 -9.44 -40.81 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.65 Total: 0.65 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.21 Total: 4.99 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.53 Total: -57.81 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.03 Total: -9.33 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.52 Total: -2.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.36 -9.44 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567685693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.395 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds