Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47215 * 2 1 4 4 C 1.35311 * 125.87229 * 124.99427 * 3 2 1 5 5 C 1.35347 * 106.18088 * 179.97438 * 4 3 2 6 6 C 1.50693 * 126.75612 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47127 * 95.00278 * 6 5 4 8 8 C 1.47439 * 111.00045 * 69.87582 * 7 6 5 9 9 C 1.54322 * 107.36952 * 236.65966 * 8 7 6 10 10 C 1.55398 * 102.90031 * 337.89642 * 9 8 7 11 11 H 1.08995 * 110.87020 * 277.39488 * 10 9 8 12 12 N 1.46499 * 111.02856 * 153.63277 * 10 9 8 13 13 C 1.34776 * 119.99787 * 92.60213 * 12 10 9 14 14 O 1.21278 * 120.00113 * 0.02562 * 13 12 10 15 15 C 1.50701 * 119.99763 * 180.02562 * 13 12 10 16 16 S 1.81005 * 109.46979 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99967 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99935 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99964 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00209 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46991 * 89.99904 * 21 19 17 23 23 H 1.48503 * 109.47372 * 210.00064 * 21 19 17 24 24 H 1.48507 * 109.47237 * 330.00143 * 21 19 17 25 25 C 1.47843 * 110.99640 * 309.02874 * 7 6 5 26 26 N 1.33771 * 106.49244 * 0.26479 * 5 4 3 27 27 N 1.28636 * 108.88951 * 359.56242 * 26 5 4 28 28 H 1.09002 * 109.47212 * 60.00754 * 1 2 3 29 29 H 1.09004 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47803 * 300.00155 * 1 2 3 31 31 H 1.08997 * 109.47140 * 239.99488 * 2 1 3 32 32 H 1.09001 * 109.46575 * 119.99650 * 2 1 3 33 33 H 1.07999 * 126.90873 * 359.94874 * 4 3 2 34 34 H 1.08999 * 109.46976 * 335.00207 * 6 5 4 35 35 H 1.09001 * 109.47462 * 214.99914 * 6 5 4 36 36 H 1.09002 * 109.88998 * 356.14887 * 8 7 6 37 37 H 1.09003 * 109.88733 * 117.17548 * 8 7 6 38 38 H 1.09005 * 110.70342 * 96.18020 * 9 8 7 39 39 H 1.08997 * 110.70605 * 219.41644 * 9 8 7 40 40 H 0.97000 * 119.99659 * 272.61138 * 12 10 9 41 41 H 1.08999 * 109.46881 * 299.99499 * 15 13 12 42 42 H 1.08997 * 109.47295 * 60.00008 * 15 13 12 43 43 H 0.97000 * 120.00736 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.37823 * 265.19398 * 25 7 6 45 45 H 1.09001 * 110.37314 * 27.42672 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8755 1.9191 0.8982 5 6 3.0541 3.2075 0.5243 6 6 3.9237 4.2321 1.2062 7 7 5.2394 4.2698 0.5538 8 6 5.1429 4.8530 -0.7969 9 6 5.7092 3.8148 -1.7884 10 6 6.6137 2.9304 -0.8859 11 1 7.5915 3.3910 -0.7458 12 7 6.7462 1.5796 -1.4372 13 6 7.7750 1.2841 -2.2562 14 8 8.5912 2.1362 -2.5363 15 6 7.9111 -0.1053 -2.8239 16 16 9.3812 -0.1855 -3.8768 17 6 9.2980 -1.8688 -4.3906 18 1 8.4937 -2.5003 -4.0433 19 6 10.2669 -2.3836 -5.2408 20 7 11.2481 -1.6144 -5.6628 21 14 10.1792 -4.1684 -5.7849 22 1 9.3844 -4.2662 -7.0355 23 1 11.5519 -4.6795 -6.0295 24 1 9.5314 -4.9787 -4.7222 25 6 5.8137 2.9122 0.4407 26 7 2.3028 3.3940 -0.5666 27 7 1.7061 2.2915 -0.8548 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.3261 1.4207 1.7438 34 1 4.0460 3.9642 2.2556 35 1 3.4542 5.2132 1.1339 36 1 4.1007 5.0641 -1.0361 37 1 5.7281 5.7712 -0.8470 38 1 4.9060 3.2224 -2.2268 39 1 6.2966 4.3042 -2.5652 40 1 6.0935 0.8980 -1.2130 41 1 8.0087 -0.8227 -2.0091 42 1 7.0270 -0.3446 -3.4148 43 1 11.9250 -1.9740 -6.2573 44 1 6.4773 2.7095 1.2812 45 1 5.0197 2.1667 0.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567868545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = 72.622854 kcal Electronic energy + Delta-G solvation = -26961.057212 eV Core-core repulsion = 23142.342212 eV Total energy + Delta-G solvation = -3818.715000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.68479 -39.88070 -38.45607 -35.93181 -34.46846 -32.47699 -32.43791 -31.31767 -30.31866 -29.40136 -28.12303 -25.82570 -25.44813 -25.11185 -22.41256 -21.87779 -21.28883 -20.56554 -20.19161 -17.88716 -17.74874 -17.18236 -16.56320 -16.36868 -15.80087 -15.42363 -15.02315 -14.83217 -14.82678 -14.72168 -14.17537 -13.98061 -13.84735 -13.59447 -13.25999 -13.11070 -12.88449 -12.62647 -12.38937 -12.25089 -12.06849 -11.91454 -11.68004 -11.57938 -11.46929 -11.08227 -11.07992 -11.04103 -10.78950 -10.74769 -10.44386 -9.83390 -9.57904 -9.40909 -9.08737 -8.90524 -8.69306 -8.25175 -6.51521 -6.23140 -3.93846 1.21120 1.92697 2.15323 2.97382 3.06667 3.20592 3.25330 3.28961 3.58369 3.82280 3.97305 4.03970 4.18593 4.22492 4.42236 4.43992 4.50915 4.57175 4.69028 4.92056 4.98061 5.03172 5.08283 5.11914 5.15400 5.17747 5.27400 5.35805 5.42160 5.48561 5.52783 5.62698 5.72351 5.81335 5.85248 5.86546 6.03711 6.09844 6.16395 6.18660 6.54184 6.69645 6.73167 7.57428 7.67482 8.17725 8.33236 8.59721 9.21924 10.84300 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.002590 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.701726 B =10809.527557 C =12544.420056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.289 5.289 4 C -0.044 4.044 5 C -0.054 4.054 6 C 0.133 3.867 7 N -0.509 5.509 8 C 0.038 3.962 9 C -0.150 4.150 10 C 0.140 3.860 11 H 0.106 0.894 12 N -0.730 5.730 13 C 0.534 3.466 14 O -0.513 6.513 15 C -0.153 4.153 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.027 3.973 26 N -0.258 5.258 27 N -0.081 5.081 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.189 0.811 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.394 0.606 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.269 0.731 44 H 0.088 0.912 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.925 5.484 18.235 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.083 5.083 4 C -0.196 4.196 5 C -0.194 4.194 6 C 0.002 3.998 7 N -0.232 5.232 8 C -0.089 4.089 9 C -0.190 4.190 10 C 0.033 3.967 11 H 0.124 0.876 12 N -0.383 5.383 13 C 0.320 3.680 14 O -0.387 6.387 15 C -0.304 4.304 16 S 0.169 5.831 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.101 4.101 26 N -0.125 5.125 27 N -0.060 5.060 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.206 0.794 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.227 0.773 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.884 7.551 16.700 27.786 hybrid contribution -1.360 -3.560 0.514 3.845 sum -22.244 3.991 17.214 28.409 Atomic orbital electron populations 1.22075 0.92515 1.03892 1.03997 1.22161 0.97102 0.76328 1.05577 1.47519 1.30158 1.12106 1.18512 1.23504 1.00263 0.95856 0.99969 1.22939 1.03071 0.95727 0.97706 1.20863 0.85474 0.96181 0.97239 1.63950 1.20148 1.18913 1.20156 1.22871 1.01695 0.97987 0.86381 1.23171 0.99309 0.97762 0.98715 1.22029 1.00077 0.83180 0.91392 0.87638 1.45893 1.29324 1.12259 1.50853 1.20308 0.80081 0.90000 0.77630 1.90705 1.41044 1.49269 1.57674 1.23528 1.07312 0.95401 1.04132 1.85421 1.25748 1.15483 1.56475 1.22857 1.14744 0.96267 1.34599 0.91005 1.24991 0.94491 0.98832 0.95260 1.70012 1.12393 1.35928 1.31883 0.86170 0.77636 0.82730 0.78964 1.20266 1.20709 1.19730 1.23406 0.98214 0.90504 0.97975 1.75107 1.08206 1.15970 1.13250 1.78308 1.20534 0.92796 1.14408 0.90590 0.89718 0.91799 0.87965 0.87537 0.79434 0.88740 0.88735 0.90964 0.90052 0.91528 0.90102 0.77304 0.89309 0.89431 0.92145 0.89365 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.04 37.16 0.37 -0.26 16 2 C 0.11 0.44 7.17 -4.05 -0.03 0.41 16 3 N -0.29 -2.23 3.44 -61.27 -0.21 -2.44 16 4 C -0.04 -0.30 9.69 -17.05 -0.17 -0.47 16 5 C -0.05 -0.49 5.00 -82.78 -0.41 -0.90 16 6 C 0.13 1.01 5.84 -4.98 -0.03 0.98 16 7 N -0.51 -4.77 5.41 -232.69 -1.26 -6.03 16 8 C 0.04 0.41 6.46 -2.84 -0.02 0.39 16 9 C -0.15 -1.90 6.67 -24.77 -0.17 -2.07 16 10 C 0.14 1.77 3.42 -65.65 -0.22 1.55 16 11 H 0.11 1.57 7.54 -51.93 -0.39 1.18 16 12 N -0.73 -10.07 5.20 -51.60 -0.27 -10.34 16 13 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 14 O -0.51 -11.79 15.50 5.56 0.09 -11.70 16 15 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.03 0.26 6.12 -2.29 -0.01 0.25 16 26 N -0.26 -3.06 11.59 33.28 0.39 -2.67 16 27 N -0.08 -0.91 12.91 60.35 0.78 -0.13 16 28 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.14 8.07 -51.93 -0.42 -0.28 16 33 H 0.19 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.07 0.80 6.55 -51.93 -0.34 0.46 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.39 4.36 8.57 -40.82 -0.35 4.01 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.49 4.63 -51.93 -0.24 0.25 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -36.90 385.25 -8.31 -45.21 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.77 Total: 1.24 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.35 Total: -5.99 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.16 Total: -47.09 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.90 -8.31 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567868545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.829 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds