Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47215 * 2 1 4 4 C 1.35311 * 125.87229 * 124.99427 * 3 2 1 5 5 C 1.35347 * 106.18088 * 179.97438 * 4 3 2 6 6 C 1.50693 * 126.75612 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47127 * 95.00278 * 6 5 4 8 8 C 1.47439 * 111.00045 * 69.87582 * 7 6 5 9 9 C 1.54322 * 107.36952 * 236.65966 * 8 7 6 10 10 C 1.55398 * 102.90031 * 337.89642 * 9 8 7 11 11 H 1.08995 * 110.87020 * 277.39488 * 10 9 8 12 12 N 1.46499 * 111.02856 * 153.63277 * 10 9 8 13 13 C 1.34776 * 119.99787 * 92.60213 * 12 10 9 14 14 O 1.21278 * 120.00113 * 0.02562 * 13 12 10 15 15 C 1.50701 * 119.99763 * 180.02562 * 13 12 10 16 16 S 1.81005 * 109.46979 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99967 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99935 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99964 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00209 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46991 * 89.99904 * 21 19 17 23 23 H 1.48503 * 109.47372 * 210.00064 * 21 19 17 24 24 H 1.48507 * 109.47237 * 330.00143 * 21 19 17 25 25 C 1.47843 * 110.99640 * 309.02874 * 7 6 5 26 26 N 1.33771 * 106.49244 * 0.26479 * 5 4 3 27 27 N 1.28636 * 108.88951 * 359.56242 * 26 5 4 28 28 H 1.09002 * 109.47212 * 60.00754 * 1 2 3 29 29 H 1.09004 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47803 * 300.00155 * 1 2 3 31 31 H 1.08997 * 109.47140 * 239.99488 * 2 1 3 32 32 H 1.09001 * 109.46575 * 119.99650 * 2 1 3 33 33 H 1.07999 * 126.90873 * 359.94874 * 4 3 2 34 34 H 1.08999 * 109.46976 * 335.00207 * 6 5 4 35 35 H 1.09001 * 109.47462 * 214.99914 * 6 5 4 36 36 H 1.09002 * 109.88998 * 356.14887 * 8 7 6 37 37 H 1.09003 * 109.88733 * 117.17548 * 8 7 6 38 38 H 1.09005 * 110.70342 * 96.18020 * 9 8 7 39 39 H 1.08997 * 110.70605 * 219.41644 * 9 8 7 40 40 H 0.97000 * 119.99659 * 272.61138 * 12 10 9 41 41 H 1.08999 * 109.46881 * 299.99499 * 15 13 12 42 42 H 1.08997 * 109.47295 * 60.00008 * 15 13 12 43 43 H 0.97000 * 120.00736 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.37823 * 265.19398 * 25 7 6 45 45 H 1.09001 * 110.37314 * 27.42672 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8755 1.9191 0.8982 5 6 3.0541 3.2075 0.5243 6 6 3.9237 4.2321 1.2062 7 7 5.2394 4.2698 0.5538 8 6 5.1429 4.8530 -0.7969 9 6 5.7092 3.8148 -1.7884 10 6 6.6137 2.9304 -0.8859 11 1 7.5915 3.3910 -0.7458 12 7 6.7462 1.5796 -1.4372 13 6 7.7750 1.2841 -2.2562 14 8 8.5912 2.1362 -2.5363 15 6 7.9111 -0.1053 -2.8239 16 16 9.3812 -0.1855 -3.8768 17 6 9.2980 -1.8688 -4.3906 18 1 8.4937 -2.5003 -4.0433 19 6 10.2669 -2.3836 -5.2408 20 7 11.2481 -1.6144 -5.6628 21 14 10.1792 -4.1684 -5.7849 22 1 9.3844 -4.2662 -7.0355 23 1 11.5519 -4.6795 -6.0295 24 1 9.5314 -4.9787 -4.7222 25 6 5.8137 2.9122 0.4407 26 7 2.3028 3.3940 -0.5666 27 7 1.7061 2.2915 -0.8548 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.3261 1.4207 1.7438 34 1 4.0460 3.9642 2.2556 35 1 3.4542 5.2132 1.1339 36 1 4.1007 5.0641 -1.0361 37 1 5.7281 5.7712 -0.8470 38 1 4.9060 3.2224 -2.2268 39 1 6.2966 4.3042 -2.5652 40 1 6.0935 0.8980 -1.2130 41 1 8.0087 -0.8227 -2.0091 42 1 7.0270 -0.3446 -3.4148 43 1 11.9250 -1.9740 -6.2573 44 1 6.4773 2.7095 1.2812 45 1 5.0197 2.1667 0.3967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567868545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = 43.570865 kcal Electronic energy + Delta-G solvation = -26962.317001 eV Core-core repulsion = 23142.342212 eV Total energy + Delta-G solvation = -3819.974789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.28739 -41.06066 -39.62817 -36.48953 -35.57730 -34.59891 -33.38685 -31.83528 -31.35478 -30.47692 -29.19056 -27.68079 -26.53815 -25.55360 -23.04340 -22.73400 -22.31911 -21.61272 -21.09141 -19.86615 -18.24835 -18.11061 -17.87034 -17.26083 -16.89337 -16.71618 -16.38285 -16.25260 -15.90265 -15.47434 -15.24661 -14.92237 -14.66376 -14.64080 -14.50535 -14.41663 -13.76101 -13.62739 -13.24979 -13.18458 -13.02482 -12.90461 -12.78778 -12.69917 -12.61155 -12.46886 -12.36711 -12.32231 -11.85285 -11.73745 -11.57190 -11.15664 -11.04739 -11.00335 -10.29750 -10.21174 -10.14020 -9.45966 -8.68918 -8.35809 -6.14498 0.66152 1.24001 1.41832 1.44650 1.49332 1.51770 1.55051 1.55968 2.15672 2.26131 2.98412 3.06460 3.30857 3.39351 3.54887 3.63756 3.70353 3.90832 3.94927 3.95814 4.05543 4.12892 4.24378 4.27724 4.28499 4.31439 4.45190 4.47391 4.62685 4.72425 4.72754 4.77286 4.83351 4.92557 4.99172 5.02809 5.13392 5.15769 5.25156 5.40138 5.41045 5.70680 5.85863 5.98505 6.18336 6.42011 7.05233 7.18199 7.54522 8.73497 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.002590 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.701726 B =10809.527557 C =12544.420056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.284 5.284 4 C -0.029 4.029 5 C -0.071 4.071 6 C 0.134 3.866 7 N -0.509 5.509 8 C 0.048 3.952 9 C -0.146 4.146 10 C 0.135 3.865 11 H 0.083 0.917 12 N -0.703 5.703 13 C 0.536 3.464 14 O -0.561 6.561 15 C -0.128 4.128 16 S -0.151 6.151 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.256 1.256 25 C 0.041 3.959 26 N -0.297 5.297 27 N -0.123 5.123 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.231 0.769 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.412 0.588 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.105 0.895 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.575 3.042 20.856 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.078 5.078 4 C -0.182 4.182 5 C -0.212 4.212 6 C 0.004 3.996 7 N -0.232 5.232 8 C -0.080 4.080 9 C -0.186 4.186 10 C 0.029 3.971 11 H 0.101 0.899 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.439 6.439 15 C -0.279 4.279 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.180 1.180 25 C -0.087 4.087 26 N -0.163 5.163 27 N -0.102 5.102 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.162 0.838 33 H 0.247 0.753 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.249 0.751 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.613 5.100 19.345 30.192 hybrid contribution -0.956 -2.750 -0.211 2.919 sum -23.568 2.350 19.134 30.448 Atomic orbital electron populations 1.22041 0.92663 1.04819 1.02551 1.22554 0.97073 0.74787 1.07507 1.47855 1.29513 1.12702 1.17712 1.24128 0.98853 0.95138 1.00044 1.23217 1.03445 0.97043 0.97459 1.20998 0.84120 0.96105 0.98339 1.64007 1.21536 1.18750 1.18880 1.22745 1.01109 0.97437 0.86757 1.23068 0.98568 0.98177 0.98742 1.22119 0.99572 0.82020 0.93342 0.89852 1.45592 1.27875 1.13325 1.48839 1.20100 0.80685 0.88974 0.78043 1.90698 1.43215 1.50299 1.59697 1.23352 1.03891 0.97094 1.03563 1.85631 1.30994 1.16634 1.59124 1.23196 1.15230 0.96181 1.34811 0.89835 1.26150 0.93824 1.04151 0.95091 1.70182 1.13427 1.38442 1.32768 0.84940 0.77903 0.76160 0.78886 1.19427 1.20290 1.17952 1.23357 0.98261 0.91014 0.96074 1.75052 1.09420 1.16910 1.14906 1.78256 1.22092 0.93590 1.16256 0.93068 0.87572 0.92174 0.87766 0.83821 0.75303 0.85639 0.89031 0.91483 0.89922 0.92681 0.92307 0.75148 0.86827 0.87665 0.91970 0.87642 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.04 71.98 0.72 -0.23 16 2 C 0.10 0.51 7.17 86.38 0.62 1.13 16 3 N -0.28 -3.70 3.44 -347.76 -1.20 -4.90 16 4 C -0.03 -0.29 9.69 83.49 0.81 0.52 16 5 C -0.07 -1.10 5.00 41.59 0.21 -0.89 16 6 C 0.13 1.68 5.84 85.55 0.50 2.18 16 7 N -0.51 -8.43 5.41 -890.09 -4.82 -13.25 16 8 C 0.05 1.00 6.46 86.65 0.56 1.56 16 9 C -0.15 -3.74 6.67 31.87 0.21 -3.53 16 10 C 0.14 3.31 3.42 46.47 0.16 3.46 16 11 H 0.08 2.49 7.54 -2.39 -0.02 2.47 16 12 N -0.70 -18.26 5.20 -435.56 -2.27 -20.53 16 13 C 0.54 20.04 7.85 87.66 0.69 20.73 16 14 O -0.56 -26.52 15.50 -3.02 -0.05 -26.57 16 15 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 16 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 17 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.71 5.49 84.86 0.47 1.18 16 20 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 21 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 C 0.04 0.66 6.12 86.78 0.53 1.19 16 26 N -0.30 -6.86 11.59 -48.61 -0.56 -7.43 16 27 N -0.12 -2.70 12.91 37.02 0.48 -2.22 16 28 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 29 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.14 -0.33 8.07 -2.39 -0.02 -0.35 16 33 H 0.23 0.16 8.06 -2.91 -0.02 0.13 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 36 H 0.07 1.49 6.55 -2.39 -0.02 1.48 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 7.83 8.57 -92.71 -0.79 7.04 16 41 H 0.11 3.93 8.14 -2.40 -0.02 3.92 16 42 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.07 0.94 4.63 -2.39 -0.01 0.93 16 Total: -1.00 -85.13 385.25 -0.49 -85.62 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.21 Total: 17.22 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 6.56 Total: -7.77 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -8.08 Total: -104.21 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -85.13 -0.49 -85.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567868545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.188 kcal (2) G-P(sol) polarization free energy of solvation -85.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds