Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.38548 * 2 1 4 4 C 1.54390 * 110.34437 * 122.23051 * 2 1 3 5 5 N 1.48140 * 104.61426 * 142.73861 * 4 2 1 6 6 C 1.34784 * 127.83889 * 140.41580 * 5 4 2 7 7 O 1.21278 * 120.00254 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.99513 * 359.97438 * 6 5 4 9 9 S 1.81003 * 109.46713 * 179.97438 * 8 6 5 10 10 C 1.76206 * 99.99741 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99785 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99644 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00336 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99785 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47161 * 59.99703 * 14 12 10 16 16 H 1.48495 * 109.47129 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47042 * 300.00328 * 14 12 10 18 18 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 19 19 C 1.54281 * 110.34168 * 237.77308 * 2 1 3 20 20 H 1.09002 * 110.34302 * 122.25531 * 19 2 1 21 21 N 1.46900 * 110.34388 * 0.10050 * 19 2 1 22 22 C 1.46905 * 111.00006 * 156.47697 * 21 19 2 23 23 C 1.52996 * 109.46951 * 180.02562 * 22 21 19 24 24 N 1.46497 * 109.47076 * 179.97438 * 23 22 21 25 25 C 1.34431 * 126.82372 * 124.70849 * 24 23 22 26 26 N 1.30837 * 108.07599 * 179.89597 * 25 24 23 27 27 C 1.33238 * 109.83217 * 0.38020 * 26 25 24 28 28 N 1.30723 * 108.94317 * 359.76614 * 27 26 25 29 29 H 1.09003 * 109.46654 * 182.23150 * 1 2 3 30 30 H 1.09005 * 109.46780 * 302.22945 * 1 2 3 31 31 H 1.08997 * 109.47148 * 62.23000 * 1 2 3 32 32 H 1.08998 * 110.40404 * 261.52413 * 4 2 1 33 33 H 1.08999 * 110.40301 * 23.83550 * 4 2 1 34 34 H 1.08997 * 109.46814 * 300.00002 * 8 6 5 35 35 H 1.08995 * 109.47513 * 59.99724 * 8 6 5 36 36 H 0.96995 * 119.99419 * 180.02562 * 13 12 10 37 37 H 1.08990 * 110.41068 * 280.80521 * 18 5 4 38 38 H 1.09000 * 110.40585 * 158.36660 * 18 5 4 39 39 H 1.00897 * 110.99868 * 280.43029 * 21 19 2 40 40 H 1.08997 * 109.46603 * 300.00175 * 22 21 19 41 41 H 1.09001 * 109.46603 * 59.99994 * 22 21 19 42 42 H 1.09008 * 109.46986 * 299.99489 * 23 22 21 43 43 H 1.08994 * 109.47548 * 59.99746 * 23 22 21 44 44 H 1.07996 * 125.96168 * 0.03615 * 25 24 23 45 45 H 1.07991 * 125.53127 * 179.79903 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0668 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7226 6 6 4.4426 -1.6663 1.3545 7 8 5.3367 -2.2750 0.8059 8 6 4.6465 -1.1164 2.7427 9 16 6.3140 -1.5264 3.3150 10 6 6.2801 -0.7846 4.9129 11 1 5.3914 -0.2730 5.2519 12 6 7.3951 -0.8586 5.7361 13 7 8.4781 -1.4825 5.3230 14 14 7.3589 -0.0727 7.4304 15 1 6.2751 -0.6875 8.2382 16 1 8.6639 -0.2902 8.1049 17 1 7.1092 1.3849 7.2948 18 6 2.8802 -1.9422 -0.6314 19 6 2.0664 -0.7714 -1.2237 20 1 2.7095 -0.1286 -1.8248 21 7 0.9524 -1.2801 -2.0351 22 6 1.3739 -1.5083 -3.4238 23 6 0.1895 -2.0359 -4.2360 24 7 0.6096 -2.2629 -5.6210 25 6 0.5042 -3.4078 -6.3176 26 7 0.9889 -3.2006 -7.5150 27 6 1.4189 -1.9436 -7.6173 28 7 1.2083 -1.3294 -6.4828 29 1 -0.3633 -1.0269 0.0400 30 1 -0.3633 0.5481 0.8694 31 1 -0.3633 0.4788 -0.9093 32 1 2.3401 -0.0794 2.0205 33 1 1.3227 -1.4846 1.5806 34 1 4.5236 -0.0335 2.7262 35 1 3.9127 -1.5550 3.4187 36 1 9.2571 -1.5345 5.8986 37 1 2.2641 -2.8388 -0.5665 38 1 3.7673 -2.1323 -1.2356 39 1 0.5656 -2.1202 -1.6320 40 1 1.7219 -0.5704 -3.8566 41 1 2.1823 -2.2392 -3.4426 42 1 -0.1588 -2.9738 -3.8033 43 1 -0.6186 -1.3047 -4.2171 44 1 0.0894 -4.3360 -5.9532 45 1 1.8681 -1.5035 -8.4952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570333021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = 69.952578 kcal Electronic energy + Delta-G solvation = -26032.900593 eV Core-core repulsion = 22214.069801 eV Total energy + Delta-G solvation = -3818.830792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44683 -40.20268 -38.15639 -36.26054 -34.03337 -32.46631 -32.40628 -31.61007 -30.38841 -29.06624 -26.91797 -26.34056 -25.49410 -23.90106 -23.31403 -22.40409 -21.71888 -19.87437 -19.46313 -17.82297 -17.70571 -17.05825 -16.65303 -16.11737 -15.67680 -15.48963 -15.27582 -15.00722 -14.82815 -14.65547 -14.25753 -14.17413 -13.87196 -13.61730 -13.22918 -13.08715 -12.93553 -12.60761 -12.56678 -12.39859 -12.10690 -11.90211 -11.76061 -11.46655 -11.07004 -11.05987 -11.02297 -10.85929 -10.79349 -10.43217 -10.21852 -10.11806 -9.85970 -9.51058 -9.08785 -9.05460 -8.64951 -8.27763 -6.53999 -6.24117 -3.95493 1.20402 1.80908 2.57244 2.79021 2.97358 3.21519 3.22546 3.27042 3.48578 3.63484 3.89813 3.96503 4.17120 4.24629 4.30002 4.41832 4.51902 4.61278 4.66130 4.75044 4.90571 4.97139 5.05419 5.10936 5.16007 5.29351 5.34652 5.38345 5.45009 5.47597 5.60999 5.64037 5.79381 5.80996 5.86831 5.93775 6.00793 6.07678 6.11278 6.19786 6.33952 6.46239 6.77197 7.56433 7.62689 7.66031 8.32294 8.47467 9.20896 10.83264 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.001825 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.865318 B =15340.790433 C =16175.800182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.102 3.898 5 N -0.628 5.628 6 C 0.554 3.446 7 O -0.516 6.516 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.081 3.919 19 C 0.079 3.921 20 H 0.092 0.908 21 N -0.668 5.668 22 C 0.045 3.955 23 C 0.132 3.868 24 N -0.378 5.378 25 C 0.254 3.746 26 N -0.548 5.548 27 C 0.198 3.802 28 N -0.316 5.316 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.344 0.656 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.219 0.781 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.762 -0.059 -18.685 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.022 4.022 5 N -0.366 5.366 6 C 0.343 3.657 7 O -0.390 6.390 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.045 4.045 19 C -0.032 4.032 20 H 0.110 0.890 21 N -0.299 5.299 22 C -0.085 4.085 23 C 0.009 3.991 24 N -0.169 5.169 25 C -0.043 4.043 26 N -0.275 5.275 27 C -0.105 4.105 28 N -0.143 5.143 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.163 0.837 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.235 0.765 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -21.200 0.103 -19.570 28.852 hybrid contribution -0.593 0.186 2.010 2.104 sum -21.793 0.289 -17.560 27.988 Atomic orbital electron populations 1.21497 0.92983 1.01774 1.01709 1.22145 0.97273 0.99395 0.92927 0.89785 1.22545 0.86915 0.95680 0.97034 1.48909 1.13439 1.57375 1.16841 1.20053 0.79597 0.78923 0.87104 1.90714 1.40650 1.40502 1.67102 1.23498 1.07771 1.03749 0.94635 1.85416 1.06365 1.73602 1.17989 1.22813 1.02958 1.41397 1.01271 0.90945 1.24996 0.94523 0.95153 0.98879 1.70008 1.03257 1.39900 1.37089 0.86216 0.77575 0.79566 0.82100 1.19917 1.20777 1.19914 1.22958 0.99863 0.96519 0.85125 1.22537 0.90539 0.95782 0.94314 0.89020 1.60643 1.31685 1.36523 1.01085 1.22224 0.95200 1.02064 0.89018 1.21746 0.98195 1.03593 0.75551 1.50513 1.45365 1.08627 1.12426 1.26117 0.97299 0.92671 0.88189 1.70556 1.19809 1.18270 1.18890 1.26055 0.98602 0.88948 0.96929 1.78081 1.18571 1.15244 1.02430 0.92762 0.93308 0.91270 0.89831 0.91019 0.89219 0.89253 0.92092 0.91690 0.90079 0.83716 0.89178 0.94216 0.88094 0.88174 0.76510 0.76667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 8.12 37.16 0.30 -0.43 16 2 C -0.10 -0.77 3.66 -89.22 -0.33 -1.09 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.10 1.01 6.46 -2.41 -0.02 1.00 16 5 N -0.63 -8.69 3.32 -169.31 -0.56 -9.25 16 6 C 0.55 10.63 7.93 -10.98 -0.09 10.54 16 7 O -0.52 -12.00 16.13 5.56 0.09 -11.91 16 8 C -0.15 -2.98 5.14 36.01 0.18 -2.79 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 14 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.08 0.87 6.70 -2.41 -0.02 0.86 16 19 C 0.08 0.63 3.35 -66.31 -0.22 0.41 16 20 H 0.09 0.84 7.84 -51.93 -0.41 0.43 16 21 N -0.67 -3.58 4.56 -105.24 -0.48 -4.06 16 22 C 0.04 0.26 5.74 -3.82 -0.02 0.24 16 23 C 0.13 0.54 6.81 -4.05 -0.03 0.51 16 24 N -0.38 -2.61 3.69 -62.63 -0.23 -2.84 16 25 C 0.25 1.61 12.63 -90.65 -1.14 0.46 16 26 N -0.55 -4.94 11.19 -15.83 -0.18 -5.11 16 27 C 0.20 1.68 13.03 -91.81 -1.20 0.48 16 28 N -0.32 -2.96 12.57 29.29 0.37 -2.60 16 29 H 0.05 0.29 7.48 -51.93 -0.39 -0.10 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.43 7.84 -51.93 -0.41 0.03 16 32 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16 33 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 34 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.06 0.60 7.58 -51.93 -0.39 0.20 16 38 H 0.08 1.04 7.88 -51.93 -0.41 0.63 16 39 H 0.34 1.40 7.67 -39.29 -0.30 1.09 16 40 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 41 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 0.12 8.09 -51.92 -0.42 -0.30 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.22 0.40 8.06 -52.49 -0.42 -0.03 16 45 H 0.22 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -37.45 389.15 -10.85 -48.30 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.85 Total: -2.68 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.37 Total: -2.74 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.35 Total: -49.24 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.45 -10.85 -48.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570333021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.249 kcal (2) G-P(sol) polarization free energy of solvation -37.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds