Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.38548 * 2 1 4 4 C 1.54390 * 110.34437 * 122.23051 * 2 1 3 5 5 N 1.48140 * 104.61426 * 142.73861 * 4 2 1 6 6 C 1.34784 * 127.83889 * 140.41580 * 5 4 2 7 7 O 1.21278 * 120.00254 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.99513 * 359.97438 * 6 5 4 9 9 S 1.81003 * 109.46713 * 179.97438 * 8 6 5 10 10 C 1.76206 * 99.99741 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99785 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99644 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00336 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99785 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47161 * 59.99703 * 14 12 10 16 16 H 1.48495 * 109.47129 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47042 * 300.00328 * 14 12 10 18 18 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 19 19 C 1.54281 * 110.34168 * 237.77308 * 2 1 3 20 20 H 1.09002 * 110.34302 * 122.25531 * 19 2 1 21 21 N 1.46900 * 110.34388 * 0.10050 * 19 2 1 22 22 C 1.46905 * 111.00006 * 156.47697 * 21 19 2 23 23 C 1.52996 * 109.46951 * 180.02562 * 22 21 19 24 24 N 1.46497 * 109.47076 * 179.97438 * 23 22 21 25 25 C 1.34431 * 126.82372 * 124.70849 * 24 23 22 26 26 N 1.30837 * 108.07599 * 179.89597 * 25 24 23 27 27 C 1.33238 * 109.83217 * 0.38020 * 26 25 24 28 28 N 1.30723 * 108.94317 * 359.76614 * 27 26 25 29 29 H 1.09003 * 109.46654 * 182.23150 * 1 2 3 30 30 H 1.09005 * 109.46780 * 302.22945 * 1 2 3 31 31 H 1.08997 * 109.47148 * 62.23000 * 1 2 3 32 32 H 1.08998 * 110.40404 * 261.52413 * 4 2 1 33 33 H 1.08999 * 110.40301 * 23.83550 * 4 2 1 34 34 H 1.08997 * 109.46814 * 300.00002 * 8 6 5 35 35 H 1.08995 * 109.47513 * 59.99724 * 8 6 5 36 36 H 0.96995 * 119.99419 * 180.02562 * 13 12 10 37 37 H 1.08990 * 110.41068 * 280.80521 * 18 5 4 38 38 H 1.09000 * 110.40585 * 158.36660 * 18 5 4 39 39 H 1.00897 * 110.99868 * 280.43029 * 21 19 2 40 40 H 1.08997 * 109.46603 * 300.00175 * 22 21 19 41 41 H 1.09001 * 109.46603 * 59.99994 * 22 21 19 42 42 H 1.09008 * 109.46986 * 299.99489 * 23 22 21 43 43 H 1.08994 * 109.47548 * 59.99746 * 23 22 21 44 44 H 1.07996 * 125.96168 * 0.03615 * 25 24 23 45 45 H 1.07991 * 125.53127 * 179.79903 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0668 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7226 6 6 4.4426 -1.6663 1.3545 7 8 5.3367 -2.2750 0.8059 8 6 4.6465 -1.1164 2.7427 9 16 6.3140 -1.5264 3.3150 10 6 6.2801 -0.7846 4.9129 11 1 5.3914 -0.2730 5.2519 12 6 7.3951 -0.8586 5.7361 13 7 8.4781 -1.4825 5.3230 14 14 7.3589 -0.0727 7.4304 15 1 6.2751 -0.6875 8.2382 16 1 8.6639 -0.2902 8.1049 17 1 7.1092 1.3849 7.2948 18 6 2.8802 -1.9422 -0.6314 19 6 2.0664 -0.7714 -1.2237 20 1 2.7095 -0.1286 -1.8248 21 7 0.9524 -1.2801 -2.0351 22 6 1.3739 -1.5083 -3.4238 23 6 0.1895 -2.0359 -4.2360 24 7 0.6096 -2.2629 -5.6210 25 6 0.5042 -3.4078 -6.3176 26 7 0.9889 -3.2006 -7.5150 27 6 1.4189 -1.9436 -7.6173 28 7 1.2083 -1.3294 -6.4828 29 1 -0.3633 -1.0269 0.0400 30 1 -0.3633 0.5481 0.8694 31 1 -0.3633 0.4788 -0.9093 32 1 2.3401 -0.0794 2.0205 33 1 1.3227 -1.4846 1.5806 34 1 4.5236 -0.0335 2.7262 35 1 3.9127 -1.5550 3.4187 36 1 9.2571 -1.5345 5.8986 37 1 2.2641 -2.8388 -0.5665 38 1 3.7673 -2.1323 -1.2356 39 1 0.5656 -2.1202 -1.6320 40 1 1.7219 -0.5704 -3.8566 41 1 2.1823 -2.2392 -3.4426 42 1 -0.1588 -2.9738 -3.8033 43 1 -0.6186 -1.3047 -4.2171 44 1 0.0894 -4.3360 -5.9532 45 1 1.8681 -1.5035 -8.4952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570333021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = 45.173194 kcal Electronic energy + Delta-G solvation = -26033.975107 eV Core-core repulsion = 22214.069801 eV Total energy + Delta-G solvation = -3819.905307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.96625 -41.25173 -39.34199 -36.94740 -34.77148 -34.60465 -33.19638 -32.16594 -31.58512 -29.97836 -27.91475 -27.49582 -27.10136 -24.58047 -24.05262 -22.89097 -22.22170 -20.84780 -20.57636 -19.61346 -18.23259 -18.21519 -17.46815 -17.11670 -16.90181 -16.68843 -16.26528 -16.03404 -15.93744 -15.71451 -15.28063 -14.91531 -14.77885 -14.63272 -14.50108 -14.10684 -13.81032 -13.49711 -13.42852 -13.27402 -13.16740 -12.97184 -12.93220 -12.87531 -12.64644 -12.31096 -12.07781 -11.78521 -11.61622 -11.52425 -11.14660 -11.02844 -11.00567 -10.80466 -10.62234 -10.32080 -9.93803 -9.51704 -8.71324 -8.36452 -6.15987 0.70106 1.19637 1.39317 1.43111 1.43450 1.49203 1.53616 1.99913 2.01975 2.25439 2.97679 2.99363 3.22550 3.47143 3.53053 3.54506 3.61563 3.83701 3.92789 3.98885 4.10985 4.16159 4.20455 4.21778 4.30995 4.37137 4.40479 4.54174 4.65882 4.71289 4.71840 4.82428 4.86131 4.95973 5.14190 5.29334 5.32119 5.39307 5.39692 5.46734 5.67246 5.80592 5.94379 6.17531 6.33890 6.37275 7.03901 7.04564 7.13065 8.72609 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.001825 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.865318 B =15340.790433 C =16175.800182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 H 0.079 0.921 4 C 0.095 3.905 5 N -0.622 5.622 6 C 0.551 3.449 7 O -0.570 6.570 8 C -0.119 4.119 9 S -0.153 6.153 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.260 1.260 16 H -0.279 1.279 17 H -0.262 1.262 18 C 0.079 3.921 19 C 0.092 3.908 20 H 0.077 0.923 21 N -0.650 5.650 22 C 0.053 3.947 23 C 0.133 3.867 24 N -0.381 5.381 25 C 0.260 3.740 26 N -0.583 5.583 27 C 0.189 3.811 28 N -0.353 5.353 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.358 0.642 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.141 0.859 43 H 0.105 0.895 44 H 0.261 0.739 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.376 0.239 -17.704 31.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.027 4.027 5 N -0.356 5.356 6 C 0.340 3.660 7 O -0.449 6.449 8 C -0.270 4.270 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.046 4.046 19 C -0.020 4.020 20 H 0.095 0.905 21 N -0.283 5.283 22 C -0.078 4.078 23 C 0.012 3.988 24 N -0.172 5.172 25 C -0.036 4.036 26 N -0.311 5.311 27 C -0.114 4.114 28 N -0.181 5.181 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.179 0.821 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.158 0.842 43 H 0.123 0.877 44 H 0.277 0.723 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -24.902 0.421 -18.600 31.085 hybrid contribution 0.401 0.075 1.597 1.648 sum -24.501 0.496 -17.003 29.827 Atomic orbital electron populations 1.21452 0.90859 1.02807 1.02044 1.22104 0.98782 0.98610 0.91427 0.90271 1.22916 0.85572 0.96222 0.97982 1.48824 1.12772 1.56220 1.17809 1.19776 0.80703 0.78797 0.86756 1.90690 1.42917 1.43193 1.68101 1.23285 1.03010 1.04835 0.95844 1.85613 1.13006 1.74639 1.19288 1.23158 1.03646 1.41404 1.01241 0.89790 1.26157 0.93866 0.95500 1.03630 1.70182 1.04157 1.41502 1.38939 0.84986 0.77964 0.78859 0.76082 1.18486 1.20395 1.18620 1.23229 0.99517 0.98728 0.83141 1.22335 0.90723 0.94465 0.94465 0.90517 1.60619 1.29825 1.37293 1.00515 1.22075 0.95826 1.00556 0.89297 1.21934 0.97035 1.05744 0.74106 1.50654 1.45103 1.08432 1.13033 1.26942 0.95744 0.93543 0.87373 1.70554 1.21233 1.18679 1.20657 1.26499 0.98407 0.89086 0.97419 1.78005 1.19951 1.16901 1.03230 0.91364 0.92771 0.91160 0.89854 0.88485 0.87575 0.87358 0.91956 0.89174 0.92808 0.82070 0.91648 0.95494 0.84162 0.87718 0.72350 0.74972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.12 71.98 0.58 -0.35 16 2 C -0.09 -1.16 3.66 -9.89 -0.04 -1.20 16 3 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.09 1.62 6.46 86.54 0.56 2.18 16 5 N -0.62 -16.49 3.32 -807.96 -2.68 -19.17 16 6 C 0.55 21.33 7.93 87.66 0.70 22.02 16 7 O -0.57 -27.66 16.13 -3.02 -0.05 -27.71 16 8 C -0.12 -4.82 5.14 71.24 0.37 -4.46 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.75 5.49 84.86 0.47 1.22 16 13 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 14 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 15 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 18 C 0.08 1.60 6.70 86.54 0.58 2.18 16 19 C 0.09 1.31 3.35 45.82 0.15 1.47 16 20 H 0.08 1.38 7.84 -2.39 -0.02 1.36 16 21 N -0.65 -5.17 4.56 -486.88 -2.22 -7.39 16 22 C 0.05 0.53 5.74 86.30 0.50 1.03 16 23 C 0.13 0.73 6.81 86.38 0.59 1.32 16 24 N -0.38 -4.66 3.69 -352.07 -1.30 -5.96 16 25 C 0.26 2.76 12.63 180.36 2.28 5.04 16 26 N -0.58 -10.06 11.19 -204.00 -2.28 -12.34 16 27 C 0.19 3.20 13.03 180.76 2.36 5.56 16 28 N -0.35 -6.58 12.57 -61.25 -0.77 -7.35 16 29 H 0.07 0.39 7.48 -2.39 -0.02 0.38 16 30 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.07 0.62 7.84 -2.39 -0.02 0.60 16 32 H 0.08 1.47 7.30 -2.39 -0.02 1.45 16 33 H 0.10 1.26 7.83 -2.39 -0.02 1.24 16 34 H 0.11 3.93 7.95 -2.40 -0.02 3.91 16 35 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.09 1.41 7.58 -2.39 -0.02 1.40 16 38 H 0.05 1.42 7.88 -2.39 -0.02 1.40 16 39 H 0.36 1.39 7.67 -89.70 -0.69 0.71 16 40 H 0.06 1.02 8.07 -2.39 -0.02 1.00 16 41 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.14 -0.32 8.09 -2.38 -0.02 -0.34 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.26 0.00 8.06 -2.91 -0.02 -0.02 16 45 H 0.23 2.51 8.06 -2.92 -0.02 2.49 16 Total: -1.00 -86.68 389.15 1.89 -84.79 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.31 Total: 10.01 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 9.73 Total: 5.40 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -8.96 Total: -108.10 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -86.68 1.89 -84.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570333021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.963 kcal (2) G-P(sol) polarization free energy of solvation -86.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds