Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.88493 * 2 1 4 4 C 1.55130 * 111.19557 * 236.07001 * 2 1 3 5 5 N 1.47432 * 104.71898 * 279.18938 * 4 2 1 6 6 C 1.34777 * 125.64829 * 155.81403 * 5 4 2 7 7 O 1.21577 * 119.99955 * 179.69281 * 6 5 4 8 8 C 1.47622 * 119.99753 * 359.69482 * 6 5 4 9 9 N 1.31865 * 126.45824 * 359.97438 * 8 6 5 10 10 N 1.28472 * 110.15145 * 180.02562 * 9 8 6 11 11 H 0.97000 * 124.92868 * 180.02562 * 10 9 8 12 12 C 1.35728 * 110.13454 * 359.97438 * 10 9 8 13 13 C 1.35541 * 107.11756 * 0.24715 * 12 10 9 14 14 F 1.35098 * 127.24386 * 179.73188 * 13 12 10 15 15 C 1.47022 * 108.70283 * 335.55303 * 5 4 2 16 16 C 1.54320 * 107.27186 * 1.28574 * 15 5 4 17 17 H 1.09003 * 110.72321 * 263.83314 * 16 15 5 18 18 N 1.46906 * 110.72224 * 140.55503 * 16 15 5 19 19 C 1.46895 * 110.99740 * 86.45312 * 18 16 15 20 20 C 1.50705 * 109.47235 * 180.02562 * 19 18 16 21 21 O 1.21292 * 119.99694 * 359.97438 * 20 19 18 22 22 N 1.34770 * 120.00014 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00023 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99328 * 359.97438 * 23 22 20 25 25 C 1.38947 * 120.00237 * 179.97438 * 23 22 20 26 26 N 1.31415 * 120.00035 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99947 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46980 * 60.00301 * 27 25 23 29 29 H 1.48500 * 109.47024 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47220 * 299.99928 * 27 25 23 31 31 H 1.08997 * 109.47437 * 296.12034 * 1 2 3 32 32 H 1.09004 * 109.46735 * 56.12112 * 1 2 3 33 33 H 1.09002 * 109.46713 * 176.11691 * 1 2 3 34 34 H 1.09002 * 110.49772 * 160.35339 * 4 2 1 35 35 H 1.08995 * 110.34222 * 37.94990 * 4 2 1 36 36 H 1.08002 * 126.43842 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.88201 * 120.70423 * 15 5 4 38 38 H 1.08998 * 109.88222 * 241.71553 * 15 5 4 39 39 H 1.00898 * 111.00255 * 210.40794 * 18 16 15 40 40 H 1.09008 * 109.47309 * 300.00132 * 19 18 16 41 41 H 1.09001 * 109.47462 * 60.00215 * 19 18 16 42 42 H 0.97007 * 120.00462 * 359.97438 * 22 20 19 43 43 H 0.96997 * 120.00324 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0909 -0.8073 -1.2001 5 7 2.0140 -2.2162 -0.7725 6 6 1.9472 -3.2835 -1.5927 7 8 1.8926 -4.4053 -1.1273 8 6 1.9404 -3.0903 -3.0562 9 7 1.9942 -1.9378 -3.6947 10 7 1.9685 -2.1335 -4.9642 11 1 1.9982 -1.4333 -5.6348 12 6 1.8950 -3.4624 -5.2307 13 6 1.8697 -4.1074 -4.0389 14 9 1.7946 -5.4404 -3.8321 15 6 2.0286 -2.2643 0.6969 16 6 2.0862 -0.8074 1.2025 17 1 3.1133 -0.5154 1.4211 18 7 1.2319 -0.6334 2.3850 19 6 1.9590 -0.9757 3.6146 20 6 1.0526 -0.7861 4.8035 21 8 -0.0869 -0.4029 4.6423 22 7 1.5084 -1.0411 6.0459 23 6 0.6836 -0.8691 7.1275 24 1 -0.3312 -0.5288 6.9838 25 6 1.1534 -1.1326 8.4083 26 7 2.3884 -1.5462 8.5831 27 14 0.0298 -0.8975 9.8820 28 1 -1.1562 -1.7808 9.7461 29 1 0.7650 -1.2429 11.1251 30 1 -0.4125 0.5187 9.9463 31 1 -0.3634 0.4524 0.9227 32 1 -0.3633 0.5729 -0.8532 33 1 -0.3633 -1.0253 -0.0696 34 1 3.1254 -0.5271 -1.3985 35 1 1.4765 -0.6457 -2.0857 36 1 1.8586 -3.9195 -6.2085 37 1 1.1219 -2.7475 1.0610 38 1 2.9049 -2.8135 1.0411 39 1 0.8652 0.3054 2.4312 40 1 2.2833 -2.0154 3.5676 41 1 2.8298 -0.3277 3.7142 42 1 2.4199 -1.3472 6.1749 43 1 2.7163 -1.7305 9.4772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570354598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -20.530622 kcal Electronic energy + Delta-G solvation = -28897.718406 eV Core-core repulsion = 24508.750792 eV Total energy + Delta-G solvation = -4388.967614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.94893 -43.13636 -40.19657 -38.43446 -37.75228 -34.76168 -33.79083 -32.48424 -31.96376 -31.17401 -31.05225 -28.90865 -26.89229 -26.38679 -24.72435 -23.81368 -22.38550 -22.00266 -20.13488 -19.66853 -19.27950 -18.81622 -17.87124 -17.41458 -16.93993 -16.42157 -16.29076 -15.85624 -15.64091 -15.40541 -15.11845 -14.94115 -14.70052 -14.43834 -14.07277 -13.74231 -13.71169 -13.44663 -13.15334 -12.94026 -12.51706 -12.37597 -12.27434 -11.92778 -11.69773 -11.51139 -11.45277 -11.09045 -10.96051 -10.87577 -10.63403 -10.42221 -10.28254 -10.18937 -10.06376 -9.47703 -9.42630 -8.71543 -8.46403 -8.11184 -7.93937 -6.39212 -3.80095 1.00551 1.37620 2.12780 2.69371 3.06512 3.22255 3.27865 3.32289 3.66534 3.92952 4.08850 4.11358 4.25991 4.33711 4.34923 4.40429 4.64062 4.84145 4.93455 5.12530 5.18576 5.25078 5.33942 5.43655 5.49484 5.69666 5.75942 5.78444 5.84813 5.90892 5.97130 6.04844 6.09884 6.16805 6.29553 6.31600 6.43242 7.08917 7.18984 7.32441 7.57371 7.61863 7.97246 8.08332 8.63437 9.20058 9.56650 10.07903 10.78416 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.002014 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.625902 B =13898.331862 C =14491.372892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.090 0.910 4 C 0.106 3.894 5 N -0.599 5.599 6 C 0.611 3.389 7 O -0.521 6.521 8 C -0.021 4.021 9 N -0.230 5.230 10 N -0.372 5.372 11 H 0.456 0.544 12 C -0.037 4.037 13 C 0.038 3.962 14 F -0.099 7.099 15 C 0.116 3.884 16 C 0.078 3.922 17 H 0.061 0.939 18 N -0.654 5.654 19 C 0.048 3.952 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.199 0.801 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.355 0.645 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 2.347 -30.191 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.108 0.892 4 C -0.017 4.017 5 N -0.333 5.333 6 C 0.397 3.603 7 O -0.395 6.395 8 C -0.182 4.182 9 N -0.067 5.067 10 N -0.088 5.088 11 H 0.303 0.697 12 C -0.182 4.182 13 C 0.008 3.992 14 F -0.077 7.077 15 C -0.007 4.007 16 C -0.033 4.033 17 H 0.079 0.921 18 N -0.288 5.288 19 C -0.085 4.085 20 C 0.227 3.773 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.200 1.200 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.216 0.784 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.177 0.823 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.226 0.774 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.236 2.324 -29.710 29.976 hybrid contribution 0.760 -0.112 0.403 0.867 sum 3.996 2.212 -29.307 29.660 Atomic orbital electron populations 1.21600 0.92948 1.02666 1.01960 1.22590 0.97753 0.98701 0.93538 0.89176 1.22616 1.01297 0.79645 0.98131 1.48124 1.71593 1.06349 1.07192 1.16297 0.77627 0.83759 0.82646 1.90881 1.50245 1.22844 1.75522 1.22135 1.11559 0.89197 0.95348 1.73750 1.17822 1.24213 0.90961 1.43106 1.52848 1.07161 1.05657 0.69740 1.22687 1.10542 0.84789 1.00168 1.17177 1.10433 0.79542 0.92013 1.91558 1.94121 1.26911 1.95124 1.22063 1.03390 0.97330 0.77869 1.22541 0.95661 0.94184 0.90958 0.92115 1.60075 1.35300 1.33734 0.99710 1.21769 0.95026 1.01766 0.89925 1.19769 0.88768 0.84891 0.83908 1.90522 1.19528 1.51437 1.85273 1.41858 1.14741 1.58726 1.04655 1.19648 0.96922 1.42306 0.84019 0.87972 1.25267 0.96547 0.97110 0.99050 1.69604 1.15229 1.45679 1.23786 0.85913 0.79573 0.78933 0.79764 1.19869 1.21007 1.19950 0.90964 0.93150 0.92144 0.91254 0.88709 0.78435 0.89371 0.91331 0.82306 0.89491 0.93674 0.77442 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.76 37.16 0.33 -1.13 16 2 C -0.11 -1.03 3.46 -88.35 -0.31 -1.34 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.11 1.00 5.64 -2.41 -0.01 0.99 16 5 N -0.60 -7.53 3.31 -171.57 -0.57 -8.10 16 6 C 0.61 8.82 7.85 -12.43 -0.10 8.72 16 7 O -0.52 -9.47 17.00 5.30 0.09 -9.38 16 8 C -0.02 -0.24 6.96 -82.74 -0.58 -0.81 16 9 N -0.23 -1.89 9.33 33.43 0.31 -1.58 16 10 N -0.37 -1.60 6.86 30.63 0.21 -1.39 16 11 H 0.46 -0.04 8.96 -190.44 -1.71 -1.75 16 12 C -0.04 -0.19 12.06 -16.79 -0.20 -0.39 16 13 C 0.04 0.39 8.03 -39.26 -0.32 0.08 16 14 F -0.10 -1.23 17.03 2.25 0.04 -1.19 16 15 C 0.12 1.57 6.23 -3.07 -0.02 1.55 16 16 C 0.08 0.93 3.02 -65.88 -0.20 0.73 16 17 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 18 N -0.65 -10.02 5.12 -106.05 -0.54 -10.56 16 19 C 0.05 0.82 6.02 -4.98 -0.03 0.79 16 20 C 0.44 10.34 7.82 -10.99 -0.09 10.26 16 21 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 22 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 23 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 27 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 31 H 0.07 0.88 6.69 -51.93 -0.35 0.53 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.84 6.10 -51.93 -0.32 0.52 16 36 H 0.20 0.19 8.06 -52.49 -0.42 -0.23 16 37 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.36 5.50 6.99 -39.29 -0.27 5.23 16 40 H 0.09 1.43 8.13 -51.92 -0.42 1.01 16 41 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 42 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -36.19 367.48 -7.63 -43.81 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.67 Total: 9.20 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -1.76 Total: 11.40 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.08 Total: -60.00 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.18 Total: -24.98 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.19 -7.63 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570354598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.284 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds